Wall clock time and date at job start Wed Apr 1 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 N 1.46500 * 109.47187 * 119.99607 * 2 1 3 5 5 S 1.65603 * 119.99921 * 51.15968 * 4 2 1 6 6 C 1.81396 * 104.44959 * 61.52617 * 5 4 2 7 7 O 1.42097 * 104.27705 * 305.45251 * 5 4 2 8 8 O 1.42097 * 104.27450 * 177.59686 * 5 4 2 9 9 C 1.50691 * 109.47216 * 239.99543 * 2 1 3 10 10 O 1.21281 * 120.00175 * 24.99718 * 9 2 1 11 11 N 1.34780 * 120.00350 * 205.00153 * 9 2 1 12 12 C 1.46503 * 120.00303 * 180.02562 * 11 9 2 13 13 H 1.08997 * 110.55476 * 312.62222 * 12 11 9 14 14 C 1.54855 * 110.62623 * 75.52208 * 12 11 9 15 15 C 1.55842 * 103.44516 * 118.49035 * 14 12 11 16 16 H 1.09000 * 115.55979 * 159.56530 * 15 14 12 17 17 C 1.55845 * 105.06131 * 288.17388 * 15 14 12 18 18 C 1.54848 * 103.44722 * 71.82792 * 17 15 14 19 19 C 1.55844 * 103.44375 * 359.97438 * 18 17 15 20 20 H 1.08999 * 115.56195 * 159.57109 * 19 18 17 21 21 N 1.50232 * 101.05400 * 32.93711 * 19 18 17 22 22 C 1.36940 * 130.83743 * 126.00894 * 21 19 18 23 23 H 1.07997 * 119.99902 * 0.05876 * 22 21 19 24 24 C 1.38816 * 119.99639 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00224 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99637 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47191 * 90.00323 * 26 24 22 28 28 H 1.48501 * 109.47052 * 210.00159 * 26 24 22 29 29 H 1.48500 * 109.47297 * 330.00099 * 26 24 22 30 30 H 1.09001 * 109.46990 * 292.26562 * 1 2 3 31 31 H 1.08993 * 109.46923 * 52.26742 * 1 2 3 32 32 H 1.09000 * 109.46935 * 172.26673 * 1 2 3 33 33 H 1.09002 * 109.47130 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46873 * 299.99549 * 3 2 1 35 35 H 1.08991 * 109.47374 * 59.99614 * 3 2 1 36 36 H 0.97000 * 120.00586 * 231.16150 * 4 2 1 37 37 H 1.08996 * 109.47184 * 58.62117 * 6 5 4 38 38 H 1.09001 * 109.46943 * 178.62711 * 6 5 4 39 39 H 1.09003 * 109.47059 * 298.62062 * 6 5 4 40 40 H 0.97004 * 119.99722 * 359.97438 * 11 9 2 41 41 H 1.09004 * 110.62416 * 236.98277 * 14 12 11 42 42 H 1.09000 * 110.62731 * 359.83881 * 14 12 11 43 43 H 1.09006 * 110.62303 * 190.31564 * 17 15 14 44 44 H 1.08999 * 110.62974 * 313.17515 * 17 15 14 45 45 H 1.09000 * 110.62745 * 118.48475 * 18 17 15 46 46 H 1.08998 * 110.62731 * 241.35126 * 18 17 15 47 47 H 0.96998 * 120.00143 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 16 1.4464 -2.1981 1.5735 6 6 1.9346 -3.2328 0.1658 7 8 0.0349 -2.0386 1.6092 8 8 2.1717 -2.5667 2.7385 9 6 2.0324 -0.7105 -1.2303 10 8 1.3370 -0.7707 -2.2222 11 7 3.2544 -1.2791 -1.2285 12 6 3.7429 -1.9693 -2.4249 13 1 2.9808 -2.6433 -2.8159 14 6 4.1745 -0.9480 -3.5059 15 6 5.6921 -1.2450 -3.6997 16 1 6.1236 -0.8955 -4.6376 17 6 6.3774 -0.7135 -2.4049 18 6 5.9458 -1.7348 -1.3239 19 6 5.0580 -2.7439 -2.1126 20 1 4.9289 -3.7208 -1.6467 21 7 5.7277 -2.7269 -3.4573 22 6 6.2201 -3.7481 -4.2254 23 1 6.1530 -4.7676 -3.8757 24 6 6.8049 -3.4727 -5.4539 25 7 6.8865 -2.2301 -5.8802 26 14 7.4759 -4.8657 -6.5021 27 1 6.4069 -5.3667 -7.4029 28 1 8.6155 -4.3693 -7.3145 29 1 7.9388 -5.9687 -5.6221 30 1 -0.3633 0.3894 0.9511 31 1 -0.3633 0.6289 -0.8127 32 1 -0.3633 -1.0183 -0.1383 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.6767 -0.2647 1.7673 37 1 3.0181 -3.2030 0.0515 38 1 1.6159 -4.2602 0.3423 39 1 1.4629 -2.8571 -0.7422 40 1 3.8106 -1.2306 -0.4353 41 1 3.6284 -1.1173 -4.4339 42 1 4.0224 0.0720 -3.1530 43 1 7.4615 -0.7094 -2.5182 44 1 6.0143 0.2847 -2.1602 45 1 6.8159 -2.2372 -0.9011 46 1 5.3690 -1.2437 -0.5402 47 1 7.2948 -2.0377 -6.7388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109811960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:32 Heat of formation + Delta-G solvation = -40.497971 kcal Electronic energy + Delta-G solvation = -31174.609775 eV Core-core repulsion = 27100.929207 eV Total energy + Delta-G solvation = -4073.680568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.70322 -39.00265 -37.35771 -36.44093 -36.09025 -34.19190 -32.43295 -30.87137 -29.69132 -29.42685 -29.02564 -27.95597 -27.49286 -24.48913 -23.38785 -21.44795 -20.48099 -19.92334 -19.43727 -18.52810 -18.00229 -17.93111 -17.11667 -16.48864 -15.93300 -15.86449 -15.10122 -15.01709 -14.69922 -14.51115 -14.20107 -13.81206 -13.67139 -13.38212 -13.10239 -12.77616 -12.69004 -12.46390 -12.35036 -12.20442 -12.13380 -12.02585 -11.93143 -11.89276 -11.66812 -11.32518 -11.15314 -11.04406 -11.00056 -10.94833 -10.93004 -10.65668 -10.52777 -10.16889 -10.03523 -9.49226 -9.30987 -9.19289 -9.04439 -8.71730 -7.06244 -5.82332 -3.22277 0.03288 2.22408 2.65081 3.14109 3.33639 3.38573 3.40146 3.52390 4.01107 4.32640 4.38527 4.51051 4.65007 4.71830 4.79003 4.98544 5.00533 5.20193 5.37276 5.43567 5.49002 5.51990 5.62684 5.64818 5.66134 5.78092 5.82682 5.89323 5.90114 6.03243 6.17350 6.19338 6.25027 6.39454 6.44157 6.58252 6.59128 6.70723 6.82385 6.88548 7.19649 7.39824 7.56115 7.69957 8.05696 8.22475 8.99178 9.62254 10.40145 11.26704 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.003474 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.224669 B = 8057.229606 C = 8510.123521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 C -0.144 4.144 4 N -1.112 6.112 5 S 2.607 3.393 6 C -0.674 4.674 7 O -0.951 6.951 8 O -0.959 6.959 9 C 0.486 3.514 10 O -0.522 6.522 11 N -0.715 5.715 12 C 0.124 3.876 13 H 0.079 0.921 14 C -0.136 4.136 15 C 0.155 3.845 16 H 0.152 0.848 17 C -0.135 4.135 18 C -0.136 4.136 19 C 0.127 3.873 20 H 0.090 0.910 21 N -0.584 5.584 22 C -0.219 4.219 23 H 0.080 0.920 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.918 3.082 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.421 0.579 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.396 0.604 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 5.922 14.288 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 C -0.203 4.203 4 N -0.873 5.873 5 S 2.700 3.300 6 C -0.825 4.825 7 O -0.941 6.941 8 O -0.950 6.950 9 C 0.269 3.731 10 O -0.396 6.396 11 N -0.370 5.370 12 C 0.018 3.982 13 H 0.098 0.902 14 C -0.176 4.176 15 C 0.049 3.951 16 H 0.169 0.831 17 C -0.174 4.174 18 C -0.175 4.175 19 C 0.018 3.982 20 H 0.108 0.892 21 N -0.304 5.304 22 C -0.347 4.347 23 H 0.098 0.902 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.748 3.252 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.256 0.744 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.235 0.765 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.215 5.390 13.915 17.539 hybrid contribution 1.289 -0.554 -0.574 1.515 sum -7.926 4.837 13.342 16.255 Atomic orbital electron populations 1.22336 0.90362 1.05266 1.03585 1.20558 0.96485 0.94667 0.81616 1.21983 1.02095 0.92068 1.04158 1.55816 1.59593 1.35679 1.36180 1.04927 0.74928 0.74268 0.75853 1.30791 1.13782 1.16446 1.21454 1.93635 1.29628 1.84320 1.86489 1.93621 1.74047 1.82542 1.44747 1.21027 0.82441 0.79734 0.89922 1.90760 1.56624 1.57944 1.34309 1.46762 1.16841 1.55806 1.17598 1.22758 0.96712 0.94212 0.84504 0.90249 1.23325 1.00400 0.96375 0.97529 1.23741 0.90511 0.82979 0.97905 0.83106 1.23010 1.00574 0.96109 0.97744 1.23025 0.99397 0.98160 0.96966 1.23051 0.90377 0.95438 0.89330 0.89224 1.46402 1.65802 1.02930 1.15222 1.19021 1.31053 0.86645 0.97954 0.90243 1.24721 1.01347 0.96651 0.97611 1.69477 1.49445 1.16726 1.20973 0.86030 0.78274 0.80730 0.80163 1.21558 1.21602 1.20713 0.90419 0.90364 0.90137 0.91169 0.90113 0.90391 0.74360 0.84543 0.85029 0.84983 0.76532 0.92042 0.92935 0.92575 0.93462 0.92229 0.93600 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 6.66 37.16 0.25 -1.40 16 2 C 0.16 1.53 1.08 -132.97 -0.14 1.38 16 3 C -0.14 -1.09 8.57 37.16 0.32 -0.77 16 4 N -1.11 -8.85 4.71 -0.40 0.00 -8.86 16 5 S 2.61 25.65 5.97 -107.50 -0.64 25.01 16 6 C -0.67 -6.32 8.99 101.05 0.91 -5.42 16 7 O -0.95 -11.88 14.68 -57.54 -0.84 -12.73 16 8 O -0.96 -11.87 18.08 -57.54 -1.04 -12.91 16 9 C 0.49 6.23 3.86 -10.99 -0.04 6.19 16 10 O -0.52 -8.72 15.97 5.56 0.09 -8.63 16 11 N -0.71 -8.91 2.45 -51.43 -0.13 -9.03 16 12 C 0.12 2.06 2.97 -65.46 -0.19 1.87 16 13 H 0.08 1.46 8.00 -51.93 -0.42 1.05 16 14 C -0.14 -2.61 5.93 -24.24 -0.14 -2.75 16 15 C 0.16 3.35 4.69 -62.82 -0.29 3.06 16 16 H 0.15 3.81 5.57 -51.93 -0.29 3.52 16 17 C -0.13 -2.43 6.44 -24.24 -0.16 -2.58 16 18 C -0.14 -2.12 6.29 -24.24 -0.15 -2.27 16 19 C 0.13 2.26 5.33 -62.84 -0.34 1.92 16 20 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 21 N -0.58 -13.45 2.98 -145.88 -0.44 -13.88 16 22 C -0.22 -5.69 10.59 -15.06 -0.16 -5.84 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 25 N -0.92 -25.33 10.48 55.49 0.58 -24.75 16 26 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 31 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.08 0.96 6.26 -51.93 -0.32 0.63 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.42 2.32 8.58 -34.47 -0.30 2.03 16 37 H 0.14 1.21 6.86 -51.93 -0.36 0.85 16 38 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.13 1.45 5.99 -51.92 -0.31 1.14 16 40 H 0.40 4.00 5.10 -40.82 -0.21 3.80 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 0.93 7.64 -51.93 -0.40 0.53 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.74 7.82 -51.93 -0.41 0.34 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.55 5.46 -51.93 -0.28 0.27 16 47 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -33.41 367.80 -9.20 -42.60 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.05 Total: 8.32 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -0.24 Total: -6.90 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.02 Total: -56.52 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.80 Total: -34.27 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 25.65 SS G_CDS: -0.64 Total: 25.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.41 -9.20 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109811960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.105 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds