Wall clock time and date at job start Wed Apr 1 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 N 1.46500 * 109.47187 * 119.99607 * 2 1 3 5 5 S 1.65603 * 119.99921 * 51.15968 * 4 2 1 6 6 C 1.81396 * 104.44959 * 61.52617 * 5 4 2 7 7 O 1.42097 * 104.27705 * 305.45251 * 5 4 2 8 8 O 1.42097 * 104.27450 * 177.59686 * 5 4 2 9 9 C 1.50691 * 109.47216 * 239.99543 * 2 1 3 10 10 O 1.21281 * 120.00175 * 24.99718 * 9 2 1 11 11 N 1.34780 * 120.00350 * 205.00153 * 9 2 1 12 12 C 1.46503 * 120.00303 * 180.02562 * 11 9 2 13 13 H 1.08997 * 110.55476 * 312.62222 * 12 11 9 14 14 C 1.54855 * 110.62623 * 75.52208 * 12 11 9 15 15 C 1.55842 * 103.44516 * 118.49035 * 14 12 11 16 16 H 1.09000 * 115.55979 * 159.56530 * 15 14 12 17 17 C 1.55845 * 105.06131 * 288.17388 * 15 14 12 18 18 C 1.54848 * 103.44722 * 71.82792 * 17 15 14 19 19 C 1.55844 * 103.44375 * 359.97438 * 18 17 15 20 20 H 1.08999 * 115.56195 * 159.57109 * 19 18 17 21 21 N 1.50232 * 101.05400 * 32.93711 * 19 18 17 22 22 C 1.36940 * 130.83743 * 126.00894 * 21 19 18 23 23 H 1.07997 * 119.99902 * 0.05876 * 22 21 19 24 24 C 1.38816 * 119.99639 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00224 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99637 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47191 * 90.00323 * 26 24 22 28 28 H 1.48501 * 109.47052 * 210.00159 * 26 24 22 29 29 H 1.48500 * 109.47297 * 330.00099 * 26 24 22 30 30 H 1.09001 * 109.46990 * 292.26562 * 1 2 3 31 31 H 1.08993 * 109.46923 * 52.26742 * 1 2 3 32 32 H 1.09000 * 109.46935 * 172.26673 * 1 2 3 33 33 H 1.09002 * 109.47130 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46873 * 299.99549 * 3 2 1 35 35 H 1.08991 * 109.47374 * 59.99614 * 3 2 1 36 36 H 0.97000 * 120.00586 * 231.16150 * 4 2 1 37 37 H 1.08996 * 109.47184 * 58.62117 * 6 5 4 38 38 H 1.09001 * 109.46943 * 178.62711 * 6 5 4 39 39 H 1.09003 * 109.47059 * 298.62062 * 6 5 4 40 40 H 0.97004 * 119.99722 * 359.97438 * 11 9 2 41 41 H 1.09004 * 110.62416 * 236.98277 * 14 12 11 42 42 H 1.09000 * 110.62731 * 359.83881 * 14 12 11 43 43 H 1.09006 * 110.62303 * 190.31564 * 17 15 14 44 44 H 1.08999 * 110.62974 * 313.17515 * 17 15 14 45 45 H 1.09000 * 110.62745 * 118.48475 * 18 17 15 46 46 H 1.08998 * 110.62731 * 241.35126 * 18 17 15 47 47 H 0.96998 * 120.00143 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 16 1.4464 -2.1981 1.5735 6 6 1.9346 -3.2328 0.1658 7 8 0.0349 -2.0386 1.6092 8 8 2.1717 -2.5667 2.7385 9 6 2.0324 -0.7105 -1.2303 10 8 1.3370 -0.7707 -2.2222 11 7 3.2544 -1.2791 -1.2285 12 6 3.7429 -1.9693 -2.4249 13 1 2.9808 -2.6433 -2.8159 14 6 4.1745 -0.9480 -3.5059 15 6 5.6921 -1.2450 -3.6997 16 1 6.1236 -0.8955 -4.6376 17 6 6.3774 -0.7135 -2.4049 18 6 5.9458 -1.7348 -1.3239 19 6 5.0580 -2.7439 -2.1126 20 1 4.9289 -3.7208 -1.6467 21 7 5.7277 -2.7269 -3.4573 22 6 6.2201 -3.7481 -4.2254 23 1 6.1530 -4.7676 -3.8757 24 6 6.8049 -3.4727 -5.4539 25 7 6.8865 -2.2301 -5.8802 26 14 7.4759 -4.8657 -6.5021 27 1 6.4069 -5.3667 -7.4029 28 1 8.6155 -4.3693 -7.3145 29 1 7.9388 -5.9687 -5.6221 30 1 -0.3633 0.3894 0.9511 31 1 -0.3633 0.6289 -0.8127 32 1 -0.3633 -1.0183 -0.1383 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 2.6767 -0.2647 1.7673 37 1 3.0181 -3.2030 0.0515 38 1 1.6159 -4.2602 0.3423 39 1 1.4629 -2.8571 -0.7422 40 1 3.8106 -1.2306 -0.4353 41 1 3.6284 -1.1173 -4.4339 42 1 4.0224 0.0720 -3.1530 43 1 7.4615 -0.7094 -2.5182 44 1 6.0143 0.2847 -2.1602 45 1 6.8159 -2.2372 -0.9011 46 1 5.3690 -1.2437 -0.5402 47 1 7.2948 -2.0377 -6.7388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109811960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:31 Heat of formation + Delta-G solvation = -65.662562 kcal Electronic energy + Delta-G solvation = -31175.700994 eV Core-core repulsion = 27100.929207 eV Total energy + Delta-G solvation = -4074.771787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88902 -40.33107 -38.26497 -37.34636 -36.98511 -35.56710 -34.19324 -31.60117 -31.04430 -30.83986 -30.22896 -29.38251 -28.23665 -26.20042 -24.54547 -22.78823 -21.69471 -21.25899 -20.38009 -20.00630 -18.98520 -18.79540 -18.72421 -17.33722 -17.19504 -16.80468 -16.73634 -16.20604 -16.04652 -15.64603 -15.43062 -15.19167 -14.44796 -14.18010 -14.14609 -13.92765 -13.80063 -13.62744 -13.52063 -13.31600 -13.27735 -13.11568 -13.00198 -12.83914 -12.80546 -12.76961 -12.69274 -12.65184 -12.41579 -12.12990 -11.99060 -11.91858 -11.82905 -11.70949 -11.52760 -11.05728 -10.98213 -10.69262 -10.34847 -10.00462 -8.91555 -7.79213 -5.19509 -0.76118 1.32941 1.47464 1.48568 1.56229 1.75255 2.03972 2.50045 2.74237 3.20607 3.34457 3.40911 3.55013 3.72075 3.89474 3.94739 3.98479 4.02631 4.06694 4.11755 4.25697 4.42268 4.46103 4.55485 4.72928 4.77505 4.83082 4.84491 4.86542 4.88343 4.98260 5.02718 5.10364 5.17296 5.21338 5.26506 5.35185 5.39621 5.47468 5.54354 5.73340 5.89246 6.07094 6.24980 6.50101 7.03680 7.18210 7.69793 8.53794 9.27683 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.003474 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.224669 B = 8057.229606 C = 8510.123521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.171 3.829 3 C -0.145 4.145 4 N -1.098 6.098 5 S 2.628 3.372 6 C -0.676 4.676 7 O -0.978 6.978 8 O -0.980 6.980 9 C 0.489 3.511 10 O -0.561 6.561 11 N -0.701 5.701 12 C 0.144 3.856 13 H 0.059 0.941 14 C -0.125 4.125 15 C 0.138 3.862 16 H 0.110 0.890 17 C -0.126 4.126 18 C -0.123 4.123 19 C 0.125 3.875 20 H 0.107 0.893 21 N -0.612 5.612 22 C -0.221 4.221 23 H 0.084 0.916 24 C -0.066 4.066 25 N -0.946 5.946 26 Si 0.974 3.026 27 H -0.293 1.293 28 H -0.297 1.297 29 H -0.270 1.270 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.437 0.563 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.412 0.588 41 H 0.024 0.976 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 6.414 17.270 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.078 3.922 3 C -0.204 4.204 4 N -0.862 5.862 5 S 2.722 3.278 6 C -0.828 4.828 7 O -0.968 6.968 8 O -0.971 6.971 9 C 0.273 3.727 10 O -0.438 6.438 11 N -0.357 5.357 12 C 0.037 3.963 13 H 0.078 0.922 14 C -0.166 4.166 15 C 0.032 3.968 16 H 0.127 0.873 17 C -0.165 4.165 18 C -0.163 4.163 19 C 0.017 3.983 20 H 0.125 0.875 21 N -0.333 5.333 22 C -0.350 4.350 23 H 0.101 0.899 24 C -0.258 4.258 25 N -0.596 5.596 26 Si 0.803 3.197 27 H -0.220 1.220 28 H -0.224 1.224 29 H -0.194 1.194 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.275 0.725 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.135 0.865 40 H 0.253 0.747 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.256 5.895 16.992 20.228 hybrid contribution 1.224 -0.702 -1.498 2.058 sum -8.033 5.193 15.494 18.209 Atomic orbital electron populations 1.22372 0.90997 1.04308 1.04266 1.20401 0.95892 0.95599 0.80268 1.22065 1.03053 0.90088 1.05161 1.55540 1.59840 1.35064 1.35749 1.04203 0.73973 0.74331 0.75334 1.30800 1.14258 1.17554 1.20146 1.93606 1.31503 1.84790 1.86912 1.93595 1.74325 1.83062 1.46070 1.21637 0.81716 0.78812 0.90490 1.90759 1.57609 1.59208 1.36251 1.46461 1.17171 1.55386 1.16695 1.22201 0.95782 0.93204 0.85142 0.92246 1.23155 0.98378 0.98052 0.96996 1.23579 0.92100 0.82968 0.98191 0.87259 1.22882 0.99053 0.98154 0.96427 1.22962 0.99570 0.96890 0.96849 1.23324 0.90374 0.97174 0.87389 0.87517 1.46641 1.66536 1.02951 1.17182 1.19367 1.29728 0.87721 0.98219 0.89866 1.25443 1.02823 0.98457 0.99100 1.69738 1.50840 1.18183 1.20824 0.85134 0.77128 0.78744 0.78646 1.22031 1.22375 1.19448 0.89125 0.90460 0.91863 0.89724 0.90703 0.87928 0.72460 0.83604 0.83230 0.86471 0.74690 0.95748 0.91204 0.94527 0.90655 0.91890 0.89032 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 6.66 71.98 0.48 -2.59 16 2 C 0.17 2.77 1.08 2.86 0.00 2.78 16 3 C -0.15 -1.60 8.57 71.98 0.62 -0.98 16 4 N -1.10 -13.55 4.71 -155.19 -0.73 -14.28 16 5 S 2.63 45.19 5.97 -56.49 -0.34 44.85 16 6 C -0.68 -11.09 8.99 113.37 1.02 -10.07 16 7 O -0.98 -22.84 14.68 -127.65 -1.87 -24.72 16 8 O -0.98 -21.52 18.08 -127.65 -2.31 -23.83 16 9 C 0.49 11.48 3.86 87.65 0.34 11.82 16 10 O -0.56 -18.38 15.97 -3.03 -0.05 -18.42 16 11 N -0.70 -15.42 2.45 -435.01 -1.07 -16.49 16 12 C 0.14 4.59 2.97 46.59 0.14 4.73 16 13 H 0.06 2.18 8.00 -2.39 -0.02 2.16 16 14 C -0.13 -4.82 5.93 32.21 0.19 -4.63 16 15 C 0.14 6.04 4.69 46.23 0.22 6.26 16 16 H 0.11 5.80 5.57 -2.39 -0.01 5.79 16 17 C -0.13 -4.29 6.44 32.21 0.21 -4.08 16 18 C -0.12 -3.41 6.29 32.21 0.20 -3.20 16 19 C 0.12 4.17 5.33 46.21 0.25 4.42 16 20 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 21 N -0.61 -28.26 2.98 -615.46 -1.84 -30.10 16 22 C -0.22 -11.62 10.59 84.03 0.89 -10.73 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 24 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 25 N -0.95 -54.44 10.48 21.65 0.23 -54.21 16 26 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 30 H 0.09 1.49 8.06 -2.39 -0.02 1.47 16 31 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 32 H 0.06 1.45 6.26 -2.39 -0.01 1.43 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.44 2.78 8.58 -96.75 -0.83 1.95 16 37 H 0.15 2.08 6.86 -2.39 -0.02 2.07 16 38 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.12 2.40 5.99 -2.39 -0.01 2.38 16 40 H 0.41 6.41 5.10 -92.71 -0.47 5.94 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 2.38 7.64 -2.39 -0.02 2.36 16 43 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.07 2.13 7.82 -2.39 -0.02 2.11 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 1.68 5.46 -2.39 -0.01 1.67 16 47 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -75.88 367.80 -1.23 -77.11 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.30 Total: 22.84 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.02 Total: -9.39 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.41 Total: -115.08 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -4.23 Total: -66.97 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.34 Total: 44.85 kcal Total: -75.88 -1.23 -77.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109811960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.443 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds