Wall clock time and date at job start Wed Apr 1 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46758 * 2 1 4 4 C 1.53007 * 109.46772 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47126 * 304.99919 * 4 3 2 6 6 C 1.50704 * 109.46901 * 185.00131 * 4 3 2 7 7 O 1.21284 * 119.99901 * 329.99992 * 6 4 3 8 8 N 1.34773 * 119.99614 * 149.72026 * 6 4 3 9 9 C 1.46506 * 119.99562 * 180.27579 * 8 6 4 10 10 H 1.08995 * 110.56280 * 36.44897 * 9 8 6 11 11 C 1.54858 * 110.62574 * 273.54756 * 9 8 6 12 12 C 1.55839 * 103.44537 * 241.51053 * 11 9 8 13 13 H 1.09002 * 115.55951 * 159.56570 * 12 11 9 14 14 C 1.55838 * 105.06569 * 288.17834 * 12 11 9 15 15 C 1.54847 * 103.44963 * 71.82631 * 14 12 11 16 16 C 1.55845 * 103.44440 * 359.97438 * 15 14 12 17 17 H 1.08996 * 115.56367 * 159.56761 * 16 15 14 18 18 N 1.50236 * 101.05173 * 32.94048 * 12 11 9 19 19 C 1.36944 * 130.84063 * 126.04921 * 18 12 11 20 20 H 1.07995 * 119.99737 * 185.06665 * 19 18 12 21 21 C 1.38804 * 119.99905 * 5.06887 * 19 18 12 22 22 N 1.31622 * 120.00278 * 8.99628 * 21 19 18 23 23 Si 1.86797 * 120.00124 * 188.99767 * 21 19 18 24 24 H 1.48504 * 109.47044 * 94.08146 * 23 21 19 25 25 H 1.48503 * 109.47605 * 214.08103 * 23 21 19 26 26 H 1.48503 * 109.47299 * 334.08624 * 23 21 19 27 27 S 1.81394 * 109.47090 * 65.00108 * 4 3 2 28 28 N 1.65595 * 104.45036 * 60.00193 * 27 4 3 29 29 O 1.42108 * 110.53939 * 171.62320 * 27 4 3 30 30 O 1.42098 * 110.54664 * 308.37080 * 27 4 3 31 31 H 1.09005 * 109.47461 * 60.00100 * 1 2 3 32 32 H 1.09006 * 109.46762 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46949 * 299.99624 * 1 2 3 34 34 H 1.09003 * 109.46949 * 240.00376 * 2 1 3 35 35 H 1.08989 * 109.47442 * 120.00223 * 2 1 3 36 36 H 1.09003 * 109.47083 * 60.00458 * 3 2 1 37 37 H 1.08994 * 109.47360 * 299.99811 * 3 2 1 38 38 H 0.96999 * 120.00482 * 0.28191 * 8 6 4 39 39 H 1.08999 * 110.62288 * 0.02562 * 11 9 8 40 40 H 1.08998 * 110.62518 * 123.02190 * 11 9 8 41 41 H 1.09003 * 110.62557 * 190.31746 * 14 12 11 42 42 H 1.09005 * 110.62415 * 313.17319 * 14 12 11 43 43 H 1.08994 * 110.63074 * 118.48938 * 15 14 12 44 44 H 1.09000 * 110.62943 * 241.51204 * 15 14 12 45 45 H 0.97000 * 120.00037 * 180.02562 * 22 21 19 46 46 H 0.96998 * 120.00344 * 359.97438 * 28 27 4 47 47 H 0.97001 * 120.00367 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0723 2.8580 0.1232 7 8 3.4166 3.7754 -0.3233 8 7 5.2475 3.1048 0.7352 9 6 5.7329 4.4813 0.8609 10 1 4.9027 5.1656 1.0352 11 6 6.5269 4.8973 -0.4019 12 6 7.9525 5.2001 0.1498 13 1 8.7565 5.1758 -0.5859 14 6 7.8056 6.5345 0.9413 15 6 7.0118 6.1186 2.2041 16 6 6.7866 4.5896 2.0033 17 1 6.5594 4.0249 2.9075 18 7 8.0434 4.2072 1.2736 19 6 8.9824 3.2490 1.5482 20 1 8.8322 2.5661 2.3713 21 6 10.1271 3.1555 0.7688 22 7 10.3982 4.0903 -0.1173 23 14 11.2829 1.7029 0.9772 24 1 10.9322 0.6463 -0.0055 25 1 12.6817 2.1465 0.7491 26 1 11.1537 1.1610 2.3538 27 16 4.1740 0.7201 -1.5510 28 7 3.5553 1.7013 -2.7328 29 8 5.5814 0.8826 -1.6618 30 8 3.5614 -0.5404 -1.7857 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.6766 1.9564 -0.8899 38 1 5.7719 2.3711 1.0922 39 1 6.5590 4.0796 -1.1219 40 1 6.0919 5.7895 -0.8523 41 1 8.7844 6.9281 1.2154 42 1 7.2478 7.2674 0.3582 43 1 7.5968 6.3059 3.1045 44 1 6.0579 6.6442 2.2485 45 1 11.1980 4.0247 -0.6622 46 1 3.0041 2.4623 -2.4920 47 1 3.7435 1.5147 -3.6659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110856802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:35 Heat of formation + Delta-G solvation = -95.880944 kcal Electronic energy + Delta-G solvation = -30432.442463 eV Core-core repulsion = 26356.360309 eV Total energy + Delta-G solvation = -4076.082154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47616 -40.13588 -38.48558 -37.21723 -36.45646 -35.41554 -34.41998 -34.08027 -32.01030 -30.96128 -30.36916 -29.27245 -26.26557 -25.80254 -23.06666 -22.38409 -21.58700 -21.52967 -20.64105 -20.25530 -19.17253 -18.84171 -18.82425 -17.82424 -17.41438 -16.90626 -16.80481 -16.68858 -15.92120 -15.71304 -15.57071 -15.19569 -15.03535 -14.76466 -14.46210 -13.85885 -13.73231 -13.63190 -13.50435 -13.31910 -13.31470 -13.15041 -12.93007 -12.85782 -12.76773 -12.69448 -12.48188 -12.09248 -11.99101 -11.93417 -11.91454 -11.88051 -11.72180 -11.39550 -11.37048 -11.16390 -11.01092 -10.80353 -10.70897 -10.05458 -8.85073 -7.77982 -5.13367 -1.07042 1.38342 1.46609 1.50777 1.55897 1.68792 1.99505 2.42549 2.51015 2.93369 3.32950 3.39204 3.45289 3.65359 3.84916 4.00188 4.08135 4.13198 4.21305 4.28287 4.46778 4.50500 4.57436 4.64909 4.68444 4.72305 4.83993 4.88233 4.91962 4.97032 5.08540 5.14778 5.18580 5.21014 5.26175 5.36163 5.40317 5.50068 5.52233 5.56699 5.72580 5.91328 6.22699 6.24484 6.42491 6.99079 7.05810 7.73935 8.59687 9.31950 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.004006 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.278255 B = 6986.993196 C = 8128.408626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.172 4.172 3 C -0.083 4.083 4 C -0.602 4.602 5 H 0.188 0.812 6 C 0.529 3.471 7 O -0.545 6.545 8 N -0.695 5.695 9 C 0.139 3.861 10 H 0.102 0.898 11 C -0.139 4.139 12 C 0.141 3.859 13 H 0.103 0.897 14 C -0.129 4.129 15 C -0.118 4.118 16 C 0.125 3.875 17 H 0.107 0.893 18 N -0.610 5.610 19 C -0.215 4.215 20 H 0.087 0.913 21 C -0.066 4.066 22 N -0.945 5.945 23 Si 0.965 3.035 24 H -0.298 1.298 25 H -0.300 1.300 26 H -0.264 1.264 27 S 2.631 3.369 28 N -1.237 6.237 29 O -0.991 6.991 30 O -0.963 6.963 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.407 0.593 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.425 0.575 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.322 -3.262 1.235 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.210 4.210 3 C -0.122 4.122 4 C -0.714 4.714 5 H 0.206 0.794 6 C 0.312 3.688 7 O -0.424 6.424 8 N -0.343 5.343 9 C 0.033 3.967 10 H 0.120 0.880 11 C -0.179 4.179 12 C 0.035 3.965 13 H 0.120 0.880 14 C -0.168 4.168 15 C -0.157 4.157 16 C 0.018 3.982 17 H 0.125 0.875 18 N -0.331 5.331 19 C -0.344 4.344 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.594 5.594 23 Si 0.795 3.205 24 H -0.226 1.226 25 H -0.227 1.227 26 H -0.189 1.189 27 S 2.721 3.279 28 N -0.917 5.917 29 O -0.980 6.980 30 O -0.951 6.951 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.242 0.758 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.255 0.745 47 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -19.848 -3.662 0.931 20.205 hybrid contribution 1.183 -0.360 0.027 1.237 sum -18.666 -4.022 0.958 19.118 Atomic orbital electron populations 1.21714 0.93920 1.02486 1.02493 1.22273 0.98355 0.95032 1.05324 1.21366 0.84954 0.99434 1.06410 1.30563 1.10727 1.05412 1.24736 0.79422 1.19402 0.81352 0.88934 0.79114 1.90691 1.57218 1.45465 1.49011 1.46073 1.20570 1.10707 1.56989 1.22599 0.95873 0.81794 0.96479 0.87988 1.23383 0.97743 0.99956 0.96852 1.23369 0.94345 0.87518 0.91283 0.87996 1.22922 0.98548 0.97845 0.97474 1.22823 0.99947 0.95609 0.97362 1.23389 0.85858 0.95271 0.93700 0.87485 1.46707 1.22507 1.38100 1.25817 1.19332 0.97087 1.06167 1.11772 0.89571 1.25397 0.99673 1.00696 1.00164 1.69842 1.27231 1.34487 1.27837 0.85250 0.77983 0.79408 0.77881 1.22578 1.22663 1.18891 1.04186 0.73427 0.74179 0.76087 1.52760 1.70533 1.46517 1.21843 1.93682 1.32825 1.86366 1.85155 1.93538 1.77061 1.41096 1.83441 0.92172 0.91911 0.91923 0.88958 0.90362 0.88318 0.89203 0.75764 0.94594 0.90703 0.94818 0.90878 0.92454 0.89448 0.94674 0.74513 0.74015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.17 -2.66 5.65 30.60 0.17 -2.48 16 3 C -0.08 -1.33 4.15 30.60 0.13 -1.20 16 4 C -0.60 -12.07 2.75 29.85 0.08 -11.99 16 5 H 0.19 2.66 8.14 -2.39 -0.02 2.65 16 6 C 0.53 14.08 6.60 87.66 0.58 14.66 16 7 O -0.55 -15.95 15.38 -3.04 -0.05 -16.00 16 8 N -0.69 -20.95 5.10 -434.99 -2.22 -23.17 16 9 C 0.14 4.55 2.73 46.59 0.13 4.68 16 10 H 0.10 3.02 7.36 -2.39 -0.02 3.01 16 11 C -0.14 -5.43 6.22 32.21 0.20 -5.23 16 12 C 0.14 6.47 4.65 46.22 0.21 6.68 16 13 H 0.10 5.61 5.76 -2.39 -0.01 5.60 16 14 C -0.13 -4.89 6.44 32.21 0.21 -4.68 16 15 C -0.12 -3.80 6.44 32.21 0.21 -3.59 16 16 C 0.12 4.39 5.04 46.20 0.23 4.62 16 17 H 0.11 3.36 8.14 -2.39 -0.02 3.35 16 18 N -0.61 -28.50 2.98 -615.30 -1.84 -30.34 16 19 C -0.21 -11.31 10.56 84.03 0.89 -10.42 16 20 H 0.09 4.27 7.84 -2.91 -0.02 4.25 16 21 C -0.07 -3.70 5.47 84.86 0.46 -3.24 16 22 N -0.94 -55.98 10.64 21.65 0.23 -55.75 16 23 Si 0.96 45.91 29.56 68.60 2.03 47.94 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 27 S 2.63 65.77 5.46 -56.49 -0.31 65.46 16 28 N -1.24 -24.78 9.13 37.02 0.34 -24.44 16 29 O -0.99 -35.80 18.01 -127.65 -2.30 -38.10 16 30 O -0.96 -25.66 14.89 -127.65 -1.90 -27.56 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 1.75 4.90 -2.39 -0.01 1.73 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.33 6.96 -2.39 -0.02 1.31 16 38 H 0.41 12.22 8.62 -92.71 -0.80 11.42 16 39 H 0.04 1.59 7.98 -2.39 -0.02 1.57 16 40 H 0.07 2.60 7.82 -2.39 -0.02 2.58 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 2.37 7.82 -2.38 -0.02 2.35 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.09 2.23 7.82 -2.39 -0.02 2.21 16 45 H 0.24 14.29 8.31 -92.71 -0.77 13.51 16 46 H 0.42 7.46 7.18 -96.75 -0.69 6.76 16 47 H 0.43 7.18 8.96 -96.74 -0.87 6.32 16 Total: -1.00 -74.33 379.70 -3.14 -77.47 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -1.34 Total: 37.85 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.22 Total: -13.37 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -3.49 Total: -133.69 kcal Atomic # 8 Polarization: -77.41 SS G_CDS: -4.25 Total: -81.66 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 65.77 SS G_CDS: -0.31 Total: 65.46 kcal Total: -74.33 -3.14 -77.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110856802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.411 kcal (2) G-P(sol) polarization free energy of solvation -74.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds