Wall clock time and date at job start Wed Apr 1 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53006 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47002 * 55.00002 * 4 3 2 6 6 C 1.50697 * 109.47239 * 174.99933 * 4 3 2 7 7 O 1.21291 * 119.99770 * 35.00409 * 6 4 3 8 8 N 1.34771 * 120.00152 * 215.00104 * 6 4 3 9 9 C 1.46497 * 119.99904 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.56686 * 32.09915 * 9 8 6 11 11 C 1.54855 * 110.62641 * 269.02071 * 9 8 6 12 12 C 1.55836 * 103.45081 * 241.51348 * 11 9 8 13 13 H 1.09002 * 116.12903 * 159.14485 * 12 11 9 14 14 C 1.55844 * 105.06392 * 288.17395 * 12 11 9 15 15 C 1.56689 * 103.60048 * 71.59344 * 14 12 11 16 16 C 1.55850 * 110.62570 * 155.00205 * 9 8 6 17 17 H 1.09000 * 115.55885 * 319.67001 * 16 9 8 18 18 N 1.50237 * 101.05380 * 85.54981 * 16 9 8 19 19 C 1.36931 * 130.83662 * 233.95228 * 18 16 9 20 20 H 1.08001 * 120.00307 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00068 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99740 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47190 * 89.99455 * 23 21 19 25 25 H 1.48503 * 109.46931 * 209.99633 * 23 21 19 26 26 H 1.48500 * 109.46769 * 329.99273 * 23 21 19 27 27 S 1.81400 * 109.47145 * 295.00563 * 4 3 2 28 28 N 1.65604 * 104.44884 * 299.99601 * 27 4 3 29 29 O 1.42097 * 110.54559 * 51.61963 * 27 4 3 30 30 O 1.42101 * 110.54402 * 188.37570 * 27 4 3 31 31 H 1.08998 * 109.47295 * 59.99857 * 1 2 3 32 32 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46920 * 299.99564 * 1 2 3 34 34 H 1.09006 * 109.46758 * 239.99827 * 2 1 3 35 35 H 1.09003 * 109.47204 * 120.00881 * 2 1 3 36 36 H 1.09007 * 109.46945 * 60.00508 * 3 2 1 37 37 H 1.08995 * 109.47339 * 299.99806 * 3 2 1 38 38 H 0.96996 * 119.99905 * 359.97438 * 8 6 4 39 39 H 1.09003 * 110.62138 * 0.02562 * 11 9 8 40 40 H 1.09003 * 110.62220 * 123.01748 * 11 9 8 41 41 H 1.09003 * 110.62805 * 190.30753 * 14 12 11 42 42 H 1.08995 * 110.62535 * 313.17658 * 14 12 11 43 43 H 1.08995 * 111.44051 * 241.94230 * 15 14 12 44 44 H 1.09000 * 110.61893 * 118.35088 * 15 14 12 45 45 H 0.97001 * 119.99569 * 180.02562 * 22 21 19 46 46 H 0.97004 * 119.99877 * 0.02562 * 28 27 4 47 47 H 0.96992 * 120.00365 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0723 2.8578 -0.1245 7 8 3.4635 3.7655 0.4013 8 7 5.1980 3.1150 -0.8194 9 6 5.6866 4.4909 -0.9393 10 1 5.4404 5.0639 -0.0454 11 6 5.1034 5.1686 -2.2037 12 6 6.3675 5.5022 -3.0519 13 1 6.2026 5.6590 -4.1179 14 6 7.0621 6.6766 -2.2990 15 6 7.6486 5.9958 -1.0154 16 6 7.2238 4.5073 -1.1959 17 1 7.8033 3.7805 -0.6267 18 7 7.2681 4.3554 -2.6899 19 6 7.9268 3.4505 -3.4787 20 1 8.5392 2.6846 -3.0263 21 6 7.8073 3.5174 -4.8601 22 7 7.0604 4.4505 -5.4116 23 14 8.7064 2.2834 -5.9364 24 1 7.8371 1.1019 -6.1671 25 1 9.0409 2.9138 -7.2387 26 1 9.9561 1.8538 -5.2589 27 16 4.1754 0.7193 1.5489 28 7 3.5577 1.7001 2.7317 29 8 3.5628 -0.5412 1.7838 30 8 5.5828 0.8817 1.6587 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 5.6851 2.3890 -1.2396 39 1 4.4504 4.4811 -2.7412 40 1 4.5676 6.0800 -1.9382 41 1 7.8589 7.1049 -2.9072 42 1 6.3350 7.4416 -2.0267 43 1 7.2114 6.4126 -0.1082 44 1 8.7348 6.0854 -0.9956 45 1 6.9767 4.4971 -6.3768 46 1 3.0063 2.4612 2.4916 47 1 3.7473 1.5136 3.6644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110856805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:40 Heat of formation + Delta-G solvation = -72.280898 kcal Electronic energy + Delta-G solvation = -30210.296852 eV Core-core repulsion = 26135.238073 eV Total energy + Delta-G solvation = -4075.058780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.13590 -38.68842 -37.48285 -36.18480 -35.59491 -34.05566 -33.23353 -32.58888 -31.09800 -29.14321 -28.85684 -27.82214 -25.12407 -24.20984 -21.78533 -21.62638 -20.30239 -19.91626 -19.60803 -18.80180 -18.22778 -17.74546 -17.05326 -16.79485 -16.26775 -15.91154 -15.73177 -14.88250 -14.76866 -14.34981 -14.19299 -14.04734 -13.89825 -13.57111 -13.02408 -12.98207 -12.62642 -12.36267 -12.30985 -12.24864 -12.11626 -11.91900 -11.69530 -11.39353 -11.22019 -11.19098 -11.12898 -10.98540 -10.94470 -10.61019 -10.54825 -10.44691 -10.36792 -10.14599 -10.03053 -9.91333 -9.36682 -9.24664 -9.03631 -8.66526 -7.01472 -5.80432 -3.19706 -0.10707 2.48118 2.64375 3.13459 3.32555 3.33663 3.38905 3.40275 3.88129 4.34153 4.36375 4.58926 4.68938 4.87749 4.98278 5.05756 5.26301 5.30111 5.41940 5.58555 5.59664 5.60460 5.63647 5.81341 5.85097 5.91692 5.96752 5.99868 6.00569 6.09955 6.18608 6.21697 6.33925 6.40556 6.52652 6.64044 6.74986 6.86489 6.92784 6.97273 7.22779 7.42184 7.67363 7.73260 8.10542 8.21737 9.01823 9.64826 10.45199 11.28582 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.003632 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.869326 B = 7708.045923 C = 8334.368845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C -0.085 4.085 4 C -0.615 4.615 5 H 0.161 0.839 6 C 0.529 3.471 7 O -0.536 6.536 8 N -0.685 5.685 9 C 0.125 3.875 10 H 0.085 0.915 11 C -0.142 4.142 12 C 0.153 3.847 13 H 0.154 0.846 14 C -0.138 4.138 15 C -0.130 4.130 16 C 0.124 3.876 17 H 0.091 0.909 18 N -0.591 5.591 19 C -0.216 4.216 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.915 3.085 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 S 2.629 3.371 28 N -1.245 6.245 29 O -0.951 6.951 30 O -0.949 6.949 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.254 0.746 46 H 0.421 0.579 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -4.084 12.689 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.124 4.124 4 C -0.726 4.726 5 H 0.179 0.821 6 C 0.311 3.689 7 O -0.414 6.414 8 N -0.334 5.334 9 C 0.019 3.981 10 H 0.103 0.897 11 C -0.182 4.182 12 C 0.046 3.954 13 H 0.171 0.829 14 C -0.177 4.177 15 C -0.169 4.169 16 C 0.015 3.985 17 H 0.109 0.891 18 N -0.311 5.311 19 C -0.344 4.344 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.746 3.254 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 S 2.717 3.283 28 N -0.922 5.922 29 O -0.939 6.939 30 O -0.938 6.938 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.242 0.758 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.249 0.751 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.733 -4.461 12.695 16.607 hybrid contribution 0.233 -0.273 -1.048 1.107 sum -9.500 -4.734 11.647 15.758 Atomic orbital electron populations 1.21685 0.94955 1.01933 1.01885 1.22263 0.97409 0.95516 1.05527 1.21276 0.86595 0.98924 1.05576 1.30629 1.09557 1.07448 1.24935 0.82131 1.19055 0.81720 0.87703 0.80454 1.90693 1.56871 1.45308 1.48562 1.46044 1.24717 1.11631 1.50971 1.22808 0.96610 0.80285 0.98412 0.89699 1.23455 0.99759 0.98965 0.96069 1.23780 0.86388 0.84859 1.00351 0.82886 1.23382 0.99565 0.98386 0.96399 1.23197 1.00063 0.96524 0.97165 1.23189 0.91853 0.95556 0.87897 0.89111 1.46546 1.53617 1.32646 0.98328 1.19036 1.21680 1.06087 0.87571 0.90261 1.24704 1.00446 0.99057 0.96306 1.69456 1.42780 1.34647 1.09865 0.86062 0.79131 0.80190 0.80039 1.21716 1.21668 1.20706 1.04481 0.74351 0.74053 0.75414 1.52982 1.70884 1.46754 1.21554 1.93545 1.77178 1.40243 1.82981 1.93650 1.29978 1.85830 1.84387 0.92746 0.92342 0.92541 0.91216 0.87567 0.89832 0.89291 0.75751 0.92172 0.92588 0.92560 0.93345 0.92717 0.92272 0.93518 0.75053 0.75093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.17 -1.61 5.65 -26.74 -0.15 -1.76 16 3 C -0.09 -0.85 4.21 -26.73 -0.11 -0.96 16 4 C -0.62 -6.96 2.75 -27.88 -0.08 -7.04 16 5 H 0.16 1.50 8.11 -51.92 -0.42 1.08 16 6 C 0.53 7.76 6.59 -10.99 -0.07 7.69 16 7 O -0.54 -8.62 15.15 5.55 0.08 -8.54 16 8 N -0.69 -11.21 5.07 -51.40 -0.26 -11.47 16 9 C 0.12 2.23 2.80 -65.43 -0.18 2.04 16 10 H 0.09 1.48 7.21 -51.93 -0.37 1.10 16 11 C -0.14 -2.75 6.23 -24.24 -0.15 -2.90 16 12 C 0.15 3.36 4.72 -62.80 -0.30 3.06 16 13 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 14 C -0.14 -2.64 6.49 -23.22 -0.15 -2.79 16 15 C -0.13 -2.29 6.58 -23.22 -0.15 -2.44 16 16 C 0.12 2.37 5.01 -62.80 -0.31 2.06 16 17 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 18 N -0.59 -13.64 2.99 -145.81 -0.44 -14.08 16 19 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 20 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -25.17 10.47 55.49 0.58 -24.59 16 23 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 S 2.63 30.57 5.46 -107.50 -0.59 29.98 16 28 N -1.24 -11.44 9.13 60.35 0.55 -10.89 16 29 O -0.95 -12.19 14.89 -57.54 -0.86 -13.05 16 30 O -0.95 -14.45 18.01 -57.54 -1.04 -15.48 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 1.10 4.90 -51.93 -0.25 0.84 16 36 H 0.08 0.75 6.96 -51.93 -0.36 0.39 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 6.58 8.63 -40.82 -0.35 6.22 16 39 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 40 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 43 H 0.05 0.84 7.81 -51.93 -0.41 0.44 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.42 3.63 6.95 -34.47 -0.24 3.39 16 47 H 0.42 3.00 8.96 -34.48 -0.31 2.69 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -31.99 379.02 -9.98 -41.97 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -7.16 Total: 14.28 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.55 Total: -9.92 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.43 Total: -61.03 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.81 Total: -37.07 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 30.57 SS G_CDS: -0.59 Total: 29.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.99 -9.98 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110856805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.308 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds