Wall clock time and date at job start Wed Apr 1 2020 03:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53006 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47002 * 55.00002 * 4 3 2 6 6 C 1.50697 * 109.47239 * 174.99933 * 4 3 2 7 7 O 1.21291 * 119.99770 * 35.00409 * 6 4 3 8 8 N 1.34771 * 120.00152 * 215.00104 * 6 4 3 9 9 C 1.46497 * 119.99904 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.56686 * 32.09915 * 9 8 6 11 11 C 1.54855 * 110.62641 * 269.02071 * 9 8 6 12 12 C 1.55836 * 103.45081 * 241.51348 * 11 9 8 13 13 H 1.09002 * 116.12903 * 159.14485 * 12 11 9 14 14 C 1.55844 * 105.06392 * 288.17395 * 12 11 9 15 15 C 1.56689 * 103.60048 * 71.59344 * 14 12 11 16 16 C 1.55850 * 110.62570 * 155.00205 * 9 8 6 17 17 H 1.09000 * 115.55885 * 319.67001 * 16 9 8 18 18 N 1.50237 * 101.05380 * 85.54981 * 16 9 8 19 19 C 1.36931 * 130.83662 * 233.95228 * 18 16 9 20 20 H 1.08001 * 120.00307 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00068 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99740 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47190 * 89.99455 * 23 21 19 25 25 H 1.48503 * 109.46931 * 209.99633 * 23 21 19 26 26 H 1.48500 * 109.46769 * 329.99273 * 23 21 19 27 27 S 1.81400 * 109.47145 * 295.00563 * 4 3 2 28 28 N 1.65604 * 104.44884 * 299.99601 * 27 4 3 29 29 O 1.42097 * 110.54559 * 51.61963 * 27 4 3 30 30 O 1.42101 * 110.54402 * 188.37570 * 27 4 3 31 31 H 1.08998 * 109.47295 * 59.99857 * 1 2 3 32 32 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46920 * 299.99564 * 1 2 3 34 34 H 1.09006 * 109.46758 * 239.99827 * 2 1 3 35 35 H 1.09003 * 109.47204 * 120.00881 * 2 1 3 36 36 H 1.09007 * 109.46945 * 60.00508 * 3 2 1 37 37 H 1.08995 * 109.47339 * 299.99806 * 3 2 1 38 38 H 0.96996 * 119.99905 * 359.97438 * 8 6 4 39 39 H 1.09003 * 110.62138 * 0.02562 * 11 9 8 40 40 H 1.09003 * 110.62220 * 123.01748 * 11 9 8 41 41 H 1.09003 * 110.62805 * 190.30753 * 14 12 11 42 42 H 1.08995 * 110.62535 * 313.17658 * 14 12 11 43 43 H 1.08995 * 111.44051 * 241.94230 * 15 14 12 44 44 H 1.09000 * 110.61893 * 118.35088 * 15 14 12 45 45 H 0.97001 * 119.99569 * 180.02562 * 22 21 19 46 46 H 0.97004 * 119.99877 * 0.02562 * 28 27 4 47 47 H 0.96992 * 120.00365 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0723 2.8578 -0.1245 7 8 3.4635 3.7655 0.4013 8 7 5.1980 3.1150 -0.8194 9 6 5.6866 4.4909 -0.9393 10 1 5.4404 5.0639 -0.0454 11 6 5.1034 5.1686 -2.2037 12 6 6.3675 5.5022 -3.0519 13 1 6.2026 5.6590 -4.1179 14 6 7.0621 6.6766 -2.2990 15 6 7.6486 5.9958 -1.0154 16 6 7.2238 4.5073 -1.1959 17 1 7.8033 3.7805 -0.6267 18 7 7.2681 4.3554 -2.6899 19 6 7.9268 3.4505 -3.4787 20 1 8.5392 2.6846 -3.0263 21 6 7.8073 3.5174 -4.8601 22 7 7.0604 4.4505 -5.4116 23 14 8.7064 2.2834 -5.9364 24 1 7.8371 1.1019 -6.1671 25 1 9.0409 2.9138 -7.2387 26 1 9.9561 1.8538 -5.2589 27 16 4.1754 0.7193 1.5489 28 7 3.5577 1.7001 2.7317 29 8 3.5628 -0.5412 1.7838 30 8 5.5828 0.8817 1.6587 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 5.6851 2.3890 -1.2396 39 1 4.4504 4.4811 -2.7412 40 1 4.5676 6.0800 -1.9382 41 1 7.8589 7.1049 -2.9072 42 1 6.3350 7.4416 -2.0267 43 1 7.2114 6.4126 -0.1082 44 1 8.7348 6.0854 -0.9956 45 1 6.9767 4.4971 -6.3768 46 1 3.0063 2.4612 2.4916 47 1 3.7473 1.5136 3.6644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110856805.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:39 Heat of formation + Delta-G solvation = -96.309852 kcal Electronic energy + Delta-G solvation = -30211.338826 eV Core-core repulsion = 26135.238073 eV Total energy + Delta-G solvation = -4076.100753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.45902 -40.11046 -38.47869 -37.21158 -36.47179 -35.42215 -34.42820 -34.03900 -32.01017 -30.94347 -30.34095 -29.26766 -26.27857 -25.81545 -23.09848 -22.40659 -21.55992 -21.54330 -20.65528 -20.28545 -19.13009 -18.86850 -18.78755 -17.82728 -17.46396 -16.88893 -16.76635 -16.72167 -15.90944 -15.74739 -15.47104 -15.19885 -15.11125 -14.77916 -14.42534 -13.88360 -13.70992 -13.65200 -13.51557 -13.32345 -13.30323 -13.16584 -12.91657 -12.89268 -12.76483 -12.70496 -12.50444 -12.10876 -12.00274 -11.97040 -11.94227 -11.89120 -11.68450 -11.39039 -11.34372 -11.15574 -10.97716 -10.94609 -10.73287 -10.05184 -8.87152 -7.76532 -5.15981 -1.05685 1.37190 1.48402 1.49862 1.57319 1.66577 2.03518 2.41053 2.49856 2.93670 3.31712 3.37587 3.45593 3.65445 3.83638 3.99883 4.06594 4.10785 4.20010 4.26662 4.44497 4.49385 4.55104 4.64495 4.66853 4.70688 4.83135 4.85894 4.91046 4.94811 5.06061 5.16316 5.18025 5.19687 5.25367 5.33165 5.38139 5.48448 5.49581 5.55233 5.68642 5.89826 6.27306 6.28002 6.41637 6.97861 7.06886 7.72443 8.58051 9.30467 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.003632 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.869326 B = 7708.045923 C = 8334.368845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.171 4.171 3 C -0.085 4.085 4 C -0.609 4.609 5 H 0.179 0.821 6 C 0.529 3.471 7 O -0.547 6.547 8 N -0.695 5.695 9 C 0.135 3.865 10 H 0.099 0.901 11 C -0.131 4.131 12 C 0.138 3.862 13 H 0.117 0.883 14 C -0.131 4.131 15 C -0.120 4.120 16 C 0.120 3.880 17 H 0.096 0.904 18 N -0.611 5.611 19 C -0.216 4.216 20 H 0.082 0.918 21 C -0.064 4.064 22 N -0.946 5.946 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.274 1.274 27 S 2.646 3.354 28 N -1.235 6.235 29 O -0.962 6.962 30 O -0.986 6.986 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.407 0.593 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.245 0.755 46 H 0.426 0.574 47 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.871 -4.337 14.541 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.208 4.208 3 C -0.124 4.124 4 C -0.720 4.720 5 H 0.196 0.804 6 C 0.313 3.687 7 O -0.426 6.426 8 N -0.343 5.343 9 C 0.029 3.971 10 H 0.117 0.883 11 C -0.171 4.171 12 C 0.031 3.969 13 H 0.134 0.866 14 C -0.170 4.170 15 C -0.160 4.160 16 C 0.013 3.987 17 H 0.114 0.886 18 N -0.332 5.332 19 C -0.345 4.345 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.595 5.595 23 Si 0.801 3.199 24 H -0.217 1.217 25 H -0.227 1.227 26 H -0.199 1.199 27 S 2.735 3.265 28 N -0.916 5.916 29 O -0.951 6.951 30 O -0.975 6.975 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.242 0.758 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.256 0.744 47 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -10.533 -4.721 14.608 18.618 hybrid contribution 0.424 -0.173 -1.568 1.634 sum -10.109 -4.895 13.039 17.209 Atomic orbital electron populations 1.21715 0.93994 1.02548 1.02412 1.22268 0.98323 0.94897 1.05337 1.21356 0.85382 0.99551 1.06075 1.30628 1.10513 1.05333 1.25504 0.80392 1.19426 0.80895 0.88892 0.79515 1.90683 1.56926 1.46180 1.48807 1.46067 1.25506 1.11014 1.51730 1.22602 0.95298 0.81286 0.97891 0.88312 1.23303 0.98269 0.99386 0.96144 1.23627 0.87933 0.85989 0.99304 0.86570 1.23275 0.99345 0.97908 0.96505 1.23163 1.00158 0.95117 0.97548 1.23389 0.92970 0.96715 0.85609 0.88582 1.46720 1.53728 1.32626 1.00161 1.19332 1.20891 1.06158 0.88076 0.90010 1.25370 1.01861 1.00848 0.97541 1.69705 1.44401 1.36203 1.09233 0.85174 0.78349 0.78269 0.78099 1.21657 1.22705 1.19908 1.03795 0.73438 0.73885 0.75393 1.52744 1.70551 1.46540 1.21750 1.93540 1.77117 1.41222 1.83176 1.93613 1.32437 1.86403 1.85017 0.92503 0.91743 0.91791 0.90912 0.88265 0.88643 0.89556 0.75807 0.94288 0.90864 0.94495 0.90800 0.89465 0.92411 0.94486 0.74427 0.73835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.17 -2.90 5.65 30.59 0.17 -2.73 16 3 C -0.08 -1.53 4.21 30.59 0.13 -1.40 16 4 C -0.61 -12.72 2.75 29.85 0.08 -12.63 16 5 H 0.18 3.05 8.11 -2.39 -0.02 3.03 16 6 C 0.53 14.57 6.59 87.66 0.58 15.15 16 7 O -0.55 -16.32 15.15 -3.06 -0.05 -16.37 16 8 N -0.69 -21.75 5.07 -434.91 -2.21 -23.96 16 9 C 0.14 4.58 2.80 46.61 0.13 4.71 16 10 H 0.10 3.11 7.21 -2.39 -0.02 3.10 16 11 C -0.13 -4.94 6.23 32.21 0.20 -4.74 16 12 C 0.14 6.08 4.72 46.22 0.22 6.30 16 13 H 0.12 6.11 5.52 -2.39 -0.01 6.09 16 14 C -0.13 -4.86 6.49 32.87 0.21 -4.65 16 15 C -0.12 -3.96 6.58 32.87 0.22 -3.74 16 16 C 0.12 4.43 5.01 46.23 0.23 4.66 16 17 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 18 N -0.61 -28.17 2.99 -615.23 -1.84 -30.01 16 19 C -0.22 -11.12 10.59 84.03 0.89 -10.23 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 22 N -0.95 -53.40 10.47 21.65 0.23 -53.18 16 23 Si 0.97 44.04 29.55 68.60 2.03 46.06 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 S 2.65 57.37 5.46 -56.49 -0.31 57.06 16 28 N -1.24 -20.15 9.13 37.02 0.34 -19.82 16 29 O -0.96 -23.16 14.89 -127.65 -1.90 -25.06 16 30 O -0.99 -28.85 18.01 -127.65 -2.30 -31.15 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.10 1.87 4.90 -2.39 -0.01 1.86 16 36 H 0.10 1.48 6.96 -2.38 -0.02 1.46 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 12.80 8.63 -92.71 -0.80 12.00 16 39 H 0.04 1.61 7.98 -2.39 -0.02 1.59 16 40 H 0.07 2.48 7.82 -2.39 -0.02 2.46 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 2.33 7.82 -2.39 -0.02 2.32 16 43 H 0.09 2.33 7.81 -2.39 -0.02 2.32 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 46 H 0.43 6.33 6.95 -96.74 -0.67 5.65 16 47 H 0.43 5.26 8.96 -96.75 -0.87 4.40 16 Total: -1.00 -68.55 379.02 -3.09 -71.64 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -1.32 Total: 38.46 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.24 Total: -13.68 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -3.48 Total: -126.96 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -4.25 Total: -72.59 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 57.37 SS G_CDS: -0.31 Total: 57.06 kcal Total: -68.55 -3.09 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110856805.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.673 kcal (2) G-P(sol) polarization free energy of solvation -68.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds