Wall clock time and date at job start Wed Apr 1 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47348 * 2 1 4 4 N 1.46503 * 109.47380 * 240.00250 * 2 1 3 5 5 S 1.65600 * 120.00136 * 68.01956 * 4 2 1 6 6 C 1.81395 * 104.44939 * 71.13411 * 5 4 2 7 7 O 1.42101 * 104.27574 * 187.20607 * 5 4 2 8 8 O 1.42104 * 104.27540 * 315.06469 * 5 4 2 9 9 C 1.50699 * 109.47188 * 120.00018 * 2 1 3 10 10 O 1.21284 * 120.00112 * 264.99696 * 9 2 1 11 11 N 1.34775 * 120.00331 * 85.00093 * 9 2 1 12 12 C 1.46490 * 120.00532 * 179.97438 * 11 9 2 13 13 H 1.09000 * 110.56017 * 34.29407 * 12 11 9 14 14 C 1.54857 * 110.62832 * 271.39749 * 12 11 9 15 15 C 1.55844 * 103.44617 * 241.34830 * 14 12 11 16 16 H 1.09000 * 115.56054 * 158.80954 * 15 14 12 17 17 C 1.55842 * 105.06359 * 288.17460 * 15 14 12 18 18 C 1.54855 * 103.44648 * 71.82753 * 17 15 14 19 19 C 1.55843 * 103.44536 * 359.97438 * 18 17 15 20 20 H 1.08999 * 116.12952 * 159.15062 * 19 18 17 21 21 N 1.50240 * 101.04998 * 32.94356 * 19 18 17 22 22 C 1.36932 * 130.84163 * 126.06715 * 21 19 18 23 23 H 1.08005 * 119.99991 * 350.98604 * 22 21 19 24 24 C 1.38817 * 120.00458 * 170.98401 * 22 21 19 25 25 N 1.31620 * 119.99625 * 6.39052 * 24 22 21 26 26 Si 1.86793 * 120.00489 * 186.39177 * 24 22 21 27 27 H 1.48500 * 109.46968 * 94.97286 * 26 24 22 28 28 H 1.48495 * 109.47344 * 214.97697 * 26 24 22 29 29 H 1.48510 * 109.46944 * 334.97609 * 26 24 22 30 30 H 1.09002 * 109.46744 * 286.45102 * 1 2 3 31 31 H 1.09000 * 109.46835 * 46.44554 * 1 2 3 32 32 H 1.08995 * 109.47246 * 166.45013 * 1 2 3 33 33 H 1.09000 * 109.47195 * 188.97395 * 3 2 1 34 34 H 1.08999 * 109.46987 * 308.97921 * 3 2 1 35 35 H 1.08994 * 109.46890 * 68.97758 * 3 2 1 36 36 H 0.96996 * 119.99516 * 248.02804 * 4 2 1 37 37 H 1.09003 * 109.47280 * 51.32358 * 6 5 4 38 38 H 1.08997 * 109.47307 * 171.32843 * 6 5 4 39 39 H 1.09003 * 109.47358 * 291.32718 * 6 5 4 40 40 H 0.97005 * 119.99618 * 359.97438 * 11 9 2 41 41 H 1.08996 * 110.62187 * 359.84184 * 14 12 11 42 42 H 1.08999 * 110.62569 * 122.85721 * 14 12 11 43 43 H 1.09005 * 110.62739 * 190.31056 * 17 15 14 44 44 H 1.08995 * 110.62909 * 313.33215 * 17 15 14 45 45 H 1.08995 * 110.62515 * 241.50930 * 18 17 15 46 46 H 1.08993 * 110.76340 * 118.55336 * 18 17 15 47 47 H 0.96995 * 120.00188 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 1.7884 -0.0186 -2.6922 6 6 2.9145 1.4030 -2.7278 7 8 2.2242 -1.0228 -3.5982 8 8 0.4358 0.4170 -2.6764 9 6 2.0323 -0.7104 1.2304 10 8 2.3208 -0.0749 2.2223 11 7 2.1611 -2.0520 1.2287 12 6 2.6499 -2.7425 2.4246 13 1 2.3071 -2.2354 3.3265 14 6 4.1955 -2.8375 2.4063 15 6 4.4642 -4.3726 2.3996 16 1 5.4441 -4.6769 2.0319 17 6 4.0884 -4.8558 3.8327 18 6 2.5429 -4.7609 3.8511 19 6 2.1953 -4.2327 2.4267 20 1 1.1771 -4.4141 2.0827 21 7 3.2855 -4.8670 1.6104 22 6 3.2239 -5.6534 0.4911 23 1 2.2713 -6.0262 0.1448 24 6 4.3859 -5.9715 -0.1986 25 7 5.5575 -5.6244 0.2907 26 14 4.2869 -6.8919 -1.8210 27 1 4.3079 -5.9200 -2.9436 28 1 5.4471 -7.8111 -1.9402 29 1 3.0268 -7.6764 -1.8689 30 1 -0.3633 0.2910 0.9856 31 1 -0.3633 0.7081 -0.7448 32 1 -0.3633 -0.9990 -0.2408 33 1 3.1182 1.4467 -0.1603 34 1 1.5517 2.0006 -0.7989 35 1 1.8136 1.9079 0.9592 36 1 2.4764 -1.5414 -1.1119 37 1 3.9149 1.0815 -2.4380 38 1 2.9438 1.8182 -3.7352 39 1 2.5615 2.1638 -2.0315 40 1 1.9300 -2.5603 0.4355 41 1 4.5980 -2.3732 1.5060 42 1 4.6190 -2.3774 3.2990 43 1 4.4117 -5.8851 3.9880 44 1 4.5225 -4.1982 4.5858 45 1 2.2105 -4.0562 4.6132 46 1 2.0975 -5.7419 4.0165 47 1 6.3694 -5.8463 -0.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111112647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:35 Heat of formation + Delta-G solvation = -50.154309 kcal Electronic energy + Delta-G solvation = -30752.052873 eV Core-core repulsion = 26677.953574 eV Total energy + Delta-G solvation = -4074.099299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31302 -38.88374 -37.31855 -36.27553 -35.97241 -33.94668 -32.56953 -30.77595 -30.05090 -29.16104 -28.91485 -27.87782 -27.10865 -24.36893 -23.62822 -21.12112 -20.04962 -19.75768 -19.23780 -18.83380 -18.17979 -17.20714 -17.04229 -16.46118 -15.84415 -15.72461 -15.09362 -14.85424 -14.38238 -14.31688 -13.99070 -13.89401 -13.60254 -13.56953 -13.31458 -12.95669 -12.76140 -12.45045 -12.18545 -12.10302 -12.02438 -11.89892 -11.75796 -11.70483 -11.46085 -11.30154 -11.18924 -11.14168 -10.96887 -10.90703 -10.57264 -10.41657 -10.11079 -9.99563 -9.88332 -9.67893 -9.32477 -9.20030 -8.93149 -8.57344 -6.98518 -5.81071 -3.19529 0.12900 2.39963 2.87627 3.33545 3.37031 3.42741 3.44626 3.70809 4.01579 4.38120 4.39433 4.54752 4.63910 4.83332 4.90687 4.99320 5.07102 5.25759 5.29546 5.47010 5.56485 5.58719 5.65967 5.75160 5.75680 5.80683 5.98921 6.02150 6.03614 6.08684 6.21498 6.24916 6.35729 6.42879 6.55266 6.66788 6.73693 6.76635 6.89680 7.02695 7.25094 7.46260 7.73657 7.84758 8.11194 8.42918 9.02216 9.65774 10.47075 11.28481 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.004760 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.725730 B = 5881.056308 C = 7703.492716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.166 3.834 3 C -0.179 4.179 4 N -1.112 6.112 5 S 2.613 3.387 6 C -0.688 4.688 7 O -0.953 6.953 8 O -0.953 6.953 9 C 0.520 3.480 10 O -0.542 6.542 11 N -0.698 5.698 12 C 0.126 3.874 13 H 0.080 0.920 14 C -0.140 4.140 15 C 0.154 3.846 16 H 0.151 0.849 17 C -0.140 4.140 18 C -0.127 4.127 19 C 0.125 3.875 20 H 0.088 0.912 21 N -0.590 5.590 22 C -0.220 4.220 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.916 5.916 26 Si 0.909 3.091 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.424 0.576 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.403 0.597 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 13.780 -0.382 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 C -0.237 4.237 4 N -0.874 5.874 5 S 2.704 3.296 6 C -0.838 4.838 7 O -0.943 6.943 8 O -0.943 6.943 9 C 0.303 3.697 10 O -0.419 6.419 11 N -0.348 5.348 12 C 0.020 3.980 13 H 0.098 0.902 14 C -0.181 4.181 15 C 0.047 3.953 16 H 0.168 0.832 17 C -0.179 4.179 18 C -0.167 4.167 19 C 0.016 3.984 20 H 0.106 0.894 21 N -0.311 5.311 22 C -0.348 4.348 23 H 0.096 0.904 24 C -0.201 4.201 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.261 0.739 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.239 0.761 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.518 13.884 -0.607 15.350 hybrid contribution 0.678 -0.688 -0.858 1.292 sum -5.840 13.196 -1.464 14.505 Atomic orbital electron populations 1.22487 0.91318 1.04937 1.03972 1.20370 0.96146 0.92612 0.83479 1.22665 1.02253 0.93595 1.05224 1.55877 1.74685 1.34464 1.22363 1.04811 0.75915 0.76170 0.72676 1.31038 1.18905 1.22088 1.11722 1.93661 1.83698 1.55176 1.61771 1.93591 1.31395 1.83670 1.85645 1.20164 0.77899 0.82947 0.88739 1.90686 1.50564 1.66079 1.34601 1.46060 1.64880 1.06176 1.17684 1.22688 0.95448 0.93686 0.86145 0.90196 1.23433 0.93893 1.00544 1.00198 1.23707 0.95955 0.88573 0.87067 0.83203 1.23073 0.94800 1.00440 0.99632 1.22870 0.97297 0.99905 0.96616 1.23169 0.93479 0.89783 0.91963 0.89372 1.46524 1.00076 1.56095 1.28382 1.18998 0.93749 1.22751 0.99253 0.90388 1.24740 0.95152 1.01339 0.98892 1.69503 0.96813 1.51548 1.38421 0.86135 0.77039 0.79056 0.83791 1.21295 1.21795 1.20662 0.91112 0.88524 0.91057 0.90658 0.91124 0.88392 0.73902 0.84964 0.85550 0.84370 0.76115 0.92171 0.92821 0.92657 0.93291 0.92988 0.92416 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 8.00 37.16 0.30 -1.58 16 2 C 0.17 1.96 1.04 -132.97 -0.14 1.82 16 3 C -0.18 -1.72 6.48 37.16 0.24 -1.48 16 4 N -1.11 -12.99 5.30 -0.40 0.00 -12.99 16 5 S 2.61 28.88 5.69 -107.50 -0.61 28.27 16 6 C -0.69 -4.95 9.52 101.05 0.96 -3.99 16 7 O -0.95 -14.69 18.08 -57.54 -1.04 -15.73 16 8 O -0.95 -12.03 14.99 -57.54 -0.86 -12.90 16 9 C 0.52 7.83 6.63 -10.99 -0.07 7.75 16 10 O -0.54 -9.55 15.58 5.55 0.09 -9.46 16 11 N -0.70 -11.14 4.80 -51.43 -0.25 -11.39 16 12 C 0.13 2.22 2.76 -65.47 -0.18 2.04 16 13 H 0.08 1.40 7.29 -51.93 -0.38 1.02 16 14 C -0.14 -2.72 6.23 -24.23 -0.15 -2.87 16 15 C 0.15 3.34 4.71 -62.82 -0.30 3.05 16 16 H 0.15 3.78 5.59 -51.93 -0.29 3.49 16 17 C -0.14 -2.64 6.44 -24.24 -0.16 -2.80 16 18 C -0.13 -2.20 6.44 -24.24 -0.16 -2.35 16 19 C 0.12 2.31 5.06 -62.83 -0.32 2.00 16 20 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 21 N -0.59 -13.38 2.98 -145.86 -0.44 -13.81 16 22 C -0.22 -5.58 10.57 -15.06 -0.16 -5.74 16 23 H 0.08 1.94 7.84 -52.48 -0.41 1.53 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 25 N -0.92 -24.99 10.53 55.49 0.58 -24.41 16 26 Si 0.91 21.30 29.56 -169.99 -5.02 16.27 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.10 1.04 6.02 -51.93 -0.31 0.73 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.67 7.40 -51.93 -0.38 0.28 16 34 H 0.07 0.50 5.59 -51.93 -0.29 0.21 16 35 H 0.10 0.98 7.53 -51.93 -0.39 0.59 16 36 H 0.42 5.38 7.14 -34.47 -0.25 5.14 16 37 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.14 0.79 4.90 -51.92 -0.25 0.54 16 40 H 0.40 6.36 7.25 -40.82 -0.30 6.06 16 41 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 42 H 0.05 0.97 7.82 -51.93 -0.41 0.57 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 45 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -32.68 371.40 -9.16 -41.83 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -6.98 Total: 13.10 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.22 Total: -4.37 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.10 Total: -62.60 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.82 Total: -38.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 28.88 SS G_CDS: -0.61 Total: 28.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.68 -9.16 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111112647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.322 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds