Wall clock time and date at job start Wed Apr 1 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47348 * 2 1 4 4 N 1.46503 * 109.47380 * 240.00250 * 2 1 3 5 5 S 1.65600 * 120.00136 * 68.01956 * 4 2 1 6 6 C 1.81395 * 104.44939 * 71.13411 * 5 4 2 7 7 O 1.42101 * 104.27574 * 187.20607 * 5 4 2 8 8 O 1.42104 * 104.27540 * 315.06469 * 5 4 2 9 9 C 1.50699 * 109.47188 * 120.00018 * 2 1 3 10 10 O 1.21284 * 120.00112 * 264.99696 * 9 2 1 11 11 N 1.34775 * 120.00331 * 85.00093 * 9 2 1 12 12 C 1.46490 * 120.00532 * 179.97438 * 11 9 2 13 13 H 1.09000 * 110.56017 * 34.29407 * 12 11 9 14 14 C 1.54857 * 110.62832 * 271.39749 * 12 11 9 15 15 C 1.55844 * 103.44617 * 241.34830 * 14 12 11 16 16 H 1.09000 * 115.56054 * 158.80954 * 15 14 12 17 17 C 1.55842 * 105.06359 * 288.17460 * 15 14 12 18 18 C 1.54855 * 103.44648 * 71.82753 * 17 15 14 19 19 C 1.55843 * 103.44536 * 359.97438 * 18 17 15 20 20 H 1.08999 * 116.12952 * 159.15062 * 19 18 17 21 21 N 1.50240 * 101.04998 * 32.94356 * 19 18 17 22 22 C 1.36932 * 130.84163 * 126.06715 * 21 19 18 23 23 H 1.08005 * 119.99991 * 350.98604 * 22 21 19 24 24 C 1.38817 * 120.00458 * 170.98401 * 22 21 19 25 25 N 1.31620 * 119.99625 * 6.39052 * 24 22 21 26 26 Si 1.86793 * 120.00489 * 186.39177 * 24 22 21 27 27 H 1.48500 * 109.46968 * 94.97286 * 26 24 22 28 28 H 1.48495 * 109.47344 * 214.97697 * 26 24 22 29 29 H 1.48510 * 109.46944 * 334.97609 * 26 24 22 30 30 H 1.09002 * 109.46744 * 286.45102 * 1 2 3 31 31 H 1.09000 * 109.46835 * 46.44554 * 1 2 3 32 32 H 1.08995 * 109.47246 * 166.45013 * 1 2 3 33 33 H 1.09000 * 109.47195 * 188.97395 * 3 2 1 34 34 H 1.08999 * 109.46987 * 308.97921 * 3 2 1 35 35 H 1.08994 * 109.46890 * 68.97758 * 3 2 1 36 36 H 0.96996 * 119.99516 * 248.02804 * 4 2 1 37 37 H 1.09003 * 109.47280 * 51.32358 * 6 5 4 38 38 H 1.08997 * 109.47307 * 171.32843 * 6 5 4 39 39 H 1.09003 * 109.47358 * 291.32718 * 6 5 4 40 40 H 0.97005 * 119.99618 * 359.97438 * 11 9 2 41 41 H 1.08996 * 110.62187 * 359.84184 * 14 12 11 42 42 H 1.08999 * 110.62569 * 122.85721 * 14 12 11 43 43 H 1.09005 * 110.62739 * 190.31056 * 17 15 14 44 44 H 1.08995 * 110.62909 * 313.33215 * 17 15 14 45 45 H 1.08995 * 110.62515 * 241.50930 * 18 17 15 46 46 H 1.08993 * 110.76340 * 118.55336 * 18 17 15 47 47 H 0.96995 * 120.00188 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 1.7884 -0.0186 -2.6922 6 6 2.9145 1.4030 -2.7278 7 8 2.2242 -1.0228 -3.5982 8 8 0.4358 0.4170 -2.6764 9 6 2.0323 -0.7104 1.2304 10 8 2.3208 -0.0749 2.2223 11 7 2.1611 -2.0520 1.2287 12 6 2.6499 -2.7425 2.4246 13 1 2.3071 -2.2354 3.3265 14 6 4.1955 -2.8375 2.4063 15 6 4.4642 -4.3726 2.3996 16 1 5.4441 -4.6769 2.0319 17 6 4.0884 -4.8558 3.8327 18 6 2.5429 -4.7609 3.8511 19 6 2.1953 -4.2327 2.4267 20 1 1.1771 -4.4141 2.0827 21 7 3.2855 -4.8670 1.6104 22 6 3.2239 -5.6534 0.4911 23 1 2.2713 -6.0262 0.1448 24 6 4.3859 -5.9715 -0.1986 25 7 5.5575 -5.6244 0.2907 26 14 4.2869 -6.8919 -1.8210 27 1 4.3079 -5.9200 -2.9436 28 1 5.4471 -7.8111 -1.9402 29 1 3.0268 -7.6764 -1.8689 30 1 -0.3633 0.2910 0.9856 31 1 -0.3633 0.7081 -0.7448 32 1 -0.3633 -0.9990 -0.2408 33 1 3.1182 1.4467 -0.1603 34 1 1.5517 2.0006 -0.7989 35 1 1.8136 1.9079 0.9592 36 1 2.4764 -1.5414 -1.1119 37 1 3.9149 1.0815 -2.4380 38 1 2.9438 1.8182 -3.7352 39 1 2.5615 2.1638 -2.0315 40 1 1.9300 -2.5603 0.4355 41 1 4.5980 -2.3732 1.5060 42 1 4.6190 -2.3774 3.2990 43 1 4.4117 -5.8851 3.9880 44 1 4.5225 -4.1982 4.5858 45 1 2.2105 -4.0562 4.6132 46 1 2.0975 -5.7419 4.0165 47 1 6.3694 -5.8463 -0.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111112647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:34 Heat of formation + Delta-G solvation = -75.149406 kcal Electronic energy + Delta-G solvation = -30753.136741 eV Core-core repulsion = 26677.953574 eV Total energy + Delta-G solvation = -4075.183167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58609 -40.30630 -38.32845 -37.31905 -36.94071 -35.34589 -34.40481 -31.63214 -30.95750 -30.81122 -30.37215 -29.36093 -27.91333 -26.16735 -24.82342 -22.47029 -21.55658 -21.05967 -20.30330 -20.16264 -19.31540 -18.83134 -18.19587 -17.37622 -17.15196 -16.75730 -16.70853 -16.17647 -15.75678 -15.65393 -15.27229 -15.02961 -14.76766 -14.47254 -14.28937 -14.01038 -13.81612 -13.63616 -13.61193 -13.42940 -13.18802 -12.94924 -12.91874 -12.85250 -12.78895 -12.68533 -12.58583 -12.52739 -12.36583 -12.07929 -11.96739 -11.95188 -11.89010 -11.71129 -11.14728 -11.04295 -10.82067 -10.71940 -10.54805 -9.96814 -8.84081 -7.78315 -5.15943 -0.70584 1.39993 1.47450 1.51401 1.55775 1.79084 2.16633 2.49527 2.87580 3.20206 3.36199 3.42932 3.46327 3.80831 3.89500 3.94579 4.02814 4.09898 4.13805 4.20435 4.27480 4.47564 4.50733 4.56120 4.65061 4.71164 4.75992 4.84252 4.86795 4.89820 4.93561 4.97592 5.09989 5.18550 5.20767 5.26159 5.35314 5.40930 5.52771 5.60834 5.69406 5.76356 5.91595 6.28282 6.58170 7.06771 7.18562 7.72782 8.59479 9.29540 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.004760 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.725730 B = 5881.056308 C = 7703.492716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 C -0.184 4.184 4 N -1.117 6.117 5 S 2.614 3.386 6 C -0.667 4.667 7 O -1.003 7.003 8 O -0.973 6.973 9 C 0.521 3.479 10 O -0.565 6.565 11 N -0.702 5.702 12 C 0.138 3.862 13 H 0.091 0.909 14 C -0.130 4.130 15 C 0.139 3.861 16 H 0.113 0.887 17 C -0.133 4.133 18 C -0.118 4.118 19 C 0.125 3.875 20 H 0.100 0.900 21 N -0.609 5.609 22 C -0.215 4.215 23 H 0.081 0.919 24 C -0.057 4.057 25 N -0.941 5.941 26 Si 0.961 3.039 27 H -0.293 1.293 28 H -0.300 1.300 29 H -0.272 1.272 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.418 0.582 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.403 0.597 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 15.851 0.140 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.078 3.922 3 C -0.242 4.242 4 N -0.877 5.877 5 S 2.711 3.289 6 C -0.821 4.821 7 O -0.994 6.994 8 O -0.963 6.963 9 C 0.305 3.695 10 O -0.444 6.444 11 N -0.351 5.351 12 C 0.031 3.969 13 H 0.109 0.891 14 C -0.170 4.170 15 C 0.033 3.967 16 H 0.130 0.870 17 C -0.172 4.172 18 C -0.158 4.158 19 C 0.017 3.983 20 H 0.118 0.882 21 N -0.331 5.331 22 C -0.344 4.344 23 H 0.099 0.901 24 C -0.251 4.251 25 N -0.590 5.590 26 Si 0.791 3.209 27 H -0.221 1.221 28 H -0.227 1.227 29 H -0.197 1.197 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.253 0.747 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.179 0.821 40 H 0.239 0.761 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.754 15.937 -0.064 17.723 hybrid contribution 1.037 -1.258 -0.975 1.900 sum -6.717 14.679 -1.039 16.176 Atomic orbital electron populations 1.22505 0.90789 1.04763 1.04571 1.20411 0.96467 0.93426 0.81846 1.22784 1.03160 0.91989 1.06309 1.55851 1.74808 1.34549 1.22468 1.04574 0.76047 0.76645 0.71662 1.30842 1.17644 1.19445 1.14138 1.93599 1.84391 1.58227 1.63185 1.93556 1.33317 1.83865 1.85601 1.20682 0.76931 0.82374 0.89470 1.90670 1.51537 1.66376 1.35817 1.46061 1.65010 1.06768 1.17244 1.22479 0.93883 0.93248 0.87261 0.89139 1.23284 0.95450 0.98569 0.99708 1.23550 0.94372 0.90199 0.88603 0.86954 1.22974 0.96278 0.99803 0.98167 1.22823 0.95747 1.00785 0.96420 1.23379 0.92992 0.89941 0.91949 0.88235 1.46680 1.01915 1.56144 1.28314 1.19269 0.93567 1.21857 0.99674 0.90128 1.25330 0.95255 1.03161 1.01322 1.69729 0.96912 1.53249 1.39125 0.85312 0.76810 0.77825 0.80935 1.22102 1.22700 1.19682 0.90436 0.87843 0.91792 0.89754 0.88361 0.88558 0.74703 0.83772 0.83114 0.82137 0.76097 0.94448 0.91449 0.94326 0.90966 0.89903 0.92314 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 8.00 71.98 0.58 -2.89 16 2 C 0.17 3.74 1.04 2.86 0.00 3.74 16 3 C -0.18 -3.01 6.48 71.98 0.47 -2.54 16 4 N -1.12 -25.12 5.30 -155.18 -0.82 -25.94 16 5 S 2.61 54.64 5.69 -56.49 -0.32 54.32 16 6 C -0.67 -7.25 9.52 113.37 1.08 -6.17 16 7 O -1.00 -31.12 18.08 -127.65 -2.31 -33.43 16 8 O -0.97 -23.24 14.99 -127.65 -1.91 -25.15 16 9 C 0.52 14.96 6.63 87.66 0.58 15.54 16 10 O -0.57 -18.92 15.58 -3.04 -0.05 -18.97 16 11 N -0.70 -21.73 4.80 -435.01 -2.09 -23.82 16 12 C 0.14 4.63 2.76 46.59 0.13 4.76 16 13 H 0.09 2.92 7.29 -2.39 -0.02 2.90 16 14 C -0.13 -4.97 6.23 32.21 0.20 -4.77 16 15 C 0.14 6.11 4.71 46.23 0.22 6.33 16 16 H 0.11 5.90 5.59 -2.39 -0.01 5.88 16 17 C -0.13 -4.87 6.44 32.21 0.21 -4.66 16 18 C -0.12 -3.80 6.44 32.21 0.21 -3.59 16 19 C 0.12 4.43 5.06 46.21 0.23 4.66 16 20 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 21 N -0.61 -27.61 2.98 -615.40 -1.84 -29.45 16 22 C -0.21 -11.00 10.57 84.04 0.89 -10.11 16 23 H 0.08 3.99 7.84 -2.91 -0.02 3.97 16 24 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 25 N -0.94 -53.19 10.53 21.65 0.23 -52.96 16 26 Si 0.96 44.79 29.56 68.60 2.03 46.82 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.08 1.48 8.07 -2.39 -0.02 1.46 16 31 H 0.10 2.02 6.02 -2.39 -0.01 2.01 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.23 7.40 -2.39 -0.02 1.21 16 34 H 0.10 1.03 5.59 -2.39 -0.01 1.01 16 35 H 0.10 1.67 7.53 -2.39 -0.02 1.65 16 36 H 0.42 10.68 7.14 -96.75 -0.69 9.99 16 37 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.16 1.09 4.90 -2.39 -0.01 1.08 16 40 H 0.40 12.60 7.25 -92.70 -0.67 11.93 16 41 H 0.04 1.57 7.98 -2.39 -0.02 1.55 16 42 H 0.07 2.36 7.82 -2.39 -0.02 2.34 16 43 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 44 H 0.07 2.28 7.82 -2.39 -0.02 2.27 16 45 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -72.00 371.40 -2.18 -74.18 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.35 Total: 36.72 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.26 Total: -2.30 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -4.52 Total: -132.18 kcal Atomic # 8 Polarization: -73.28 SS G_CDS: -4.27 Total: -77.55 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.32 Total: 54.32 kcal Total: -72.00 -2.18 -74.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111112647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.974 kcal (2) G-P(sol) polarization free energy of solvation -71.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds