Wall clock time and date at job start Wed Apr 1 2020 03:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 C 1.53003 * 109.47528 * 180.02562 * 3 2 1 5 5 S 1.81391 * 109.47442 * 179.97438 * 4 3 2 6 6 O 1.42100 * 110.54527 * 291.62355 * 5 4 3 7 7 O 1.42101 * 110.54422 * 68.37410 * 5 4 3 8 8 N 1.65597 * 104.45176 * 180.02562 * 5 4 3 9 9 C 1.46500 * 120.00284 * 64.99885 * 8 5 4 10 10 C 1.50701 * 109.47199 * 165.00290 * 9 8 5 11 11 O 1.21276 * 120.00120 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99639 * 180.02562 * 10 9 8 13 13 C 1.46492 * 119.99768 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51777 * 350.58159 * 13 12 10 15 15 C 1.53003 * 117.44544 * 205.16632 * 13 12 10 16 16 H 1.09000 * 119.53634 * 5.71454 * 15 13 12 17 17 C 1.54385 * 118.12518 * 160.80602 * 15 13 12 18 18 N 1.48145 * 104.61468 * 87.19226 * 17 15 13 19 19 C 1.36946 * 127.83742 * 140.41351 * 18 17 15 20 20 H 1.08003 * 120.00091 * 195.57444 * 19 18 17 21 21 C 1.38815 * 119.99848 * 15.57220 * 19 18 17 22 22 N 1.31616 * 119.99688 * 9.10206 * 21 19 18 23 23 Si 1.86797 * 119.99823 * 189.09525 * 21 19 18 24 24 H 1.48501 * 109.46566 * 60.00649 * 23 21 19 25 25 H 1.48500 * 109.47143 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47252 * 300.00323 * 23 21 19 27 27 C 1.48144 * 104.32708 * 320.41461 * 18 17 15 28 28 C 1.53000 * 117.44559 * 135.99814 * 13 12 10 29 29 H 1.09001 * 119.53380 * 355.87930 * 28 13 12 30 30 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46932 * 300.00153 * 1 2 3 32 32 H 1.08997 * 109.46888 * 60.00009 * 1 2 3 33 33 H 1.09005 * 109.47662 * 239.99705 * 2 1 3 34 34 H 1.09005 * 109.47475 * 119.99868 * 2 1 3 35 35 H 1.08997 * 109.47137 * 299.99838 * 3 2 1 36 36 H 1.08995 * 109.47192 * 60.00033 * 3 2 1 37 37 H 1.09006 * 109.46855 * 300.00152 * 4 3 2 38 38 H 1.09005 * 109.46866 * 59.99755 * 4 3 2 39 39 H 0.97009 * 120.00198 * 245.00435 * 8 5 4 40 40 H 1.09002 * 109.46923 * 285.00725 * 9 8 5 41 41 H 1.09001 * 109.46960 * 45.00093 * 9 8 5 42 42 H 0.97000 * 119.99965 * 0.02562 * 12 10 9 43 43 H 1.08996 * 110.40884 * 205.97751 * 17 15 13 44 44 H 1.08997 * 110.41127 * 328.41306 * 17 15 13 45 45 H 0.97003 * 119.99493 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.40945 * 158.36696 * 27 18 17 47 47 H 1.09001 * 110.41008 * 280.80205 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8781 3.7860 -1.2385 7 8 3.8791 3.7867 1.2355 8 7 5.8243 3.0078 -0.0028 9 6 6.5062 2.4094 -1.1531 10 6 7.9789 2.7211 -1.0821 11 8 8.4160 3.3780 -0.1611 12 7 8.8102 2.2698 -2.0422 13 6 10.2417 2.5733 -1.9735 14 1 10.5324 3.2965 -1.2116 15 6 11.0249 2.5807 -3.2879 16 1 10.4928 2.4572 -4.2311 17 6 12.3816 3.3166 -3.3225 18 7 13.3670 2.3054 -2.8741 19 6 14.6300 2.0909 -3.3580 20 1 15.1497 1.1737 -3.1232 21 6 15.2423 3.0523 -4.1503 22 7 14.6901 4.2388 -4.2901 23 14 16.8499 2.6621 -5.0178 24 1 16.6498 1.5135 -5.9376 25 1 17.2937 3.8474 -5.7945 26 1 17.8844 2.3153 -4.0105 27 6 12.6762 1.5789 -1.7834 28 6 11.2191 1.4353 -2.2747 29 1 10.8350 0.4324 -2.4612 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9337 0.9285 0.8892 38 1 3.9330 0.9288 -0.8909 39 1 6.3392 3.3191 0.7582 40 1 6.3623 1.3290 -1.1390 41 1 6.0920 2.8190 -2.0744 42 1 8.4606 1.7447 -2.7790 43 1 12.6095 3.6460 -4.3362 44 1 12.3709 4.1659 -2.6393 45 1 15.1182 4.9108 -4.8435 46 1 13.1263 0.5971 -1.6359 47 1 12.7114 2.1567 -0.8598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115180106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:57 Heat of formation + Delta-G solvation = -57.433638 kcal Electronic energy + Delta-G solvation = -27367.724262 eV Core-core repulsion = 23293.309308 eV Total energy + Delta-G solvation = -4074.414954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.07643 -38.52449 -37.47844 -36.43705 -36.25387 -35.12853 -34.56023 -32.75681 -31.06164 -30.41442 -27.61031 -27.19395 -25.49742 -24.92535 -22.09173 -21.89452 -20.76436 -20.32389 -19.77848 -19.36126 -18.34800 -17.38869 -16.89463 -16.85735 -16.45249 -16.38992 -15.96232 -15.58612 -15.08665 -14.71194 -14.54230 -14.02898 -13.81051 -13.64137 -13.49315 -13.41105 -13.21157 -12.80347 -12.48825 -12.44570 -12.37225 -12.30338 -12.27363 -12.15743 -11.85417 -11.61810 -11.55486 -11.25534 -11.03997 -10.98972 -10.84500 -10.46601 -10.29313 -10.24389 -10.14796 -9.91671 -9.77105 -9.27343 -8.78249 -8.44762 -6.91006 -5.83007 -3.17675 -0.20201 2.21082 2.37820 2.94943 3.35385 3.37076 3.41426 3.42780 3.72957 3.93254 4.19946 4.21588 4.27869 4.35504 4.44146 4.58686 4.68009 4.81867 4.84593 4.90854 5.04203 5.07669 5.14442 5.21600 5.29555 5.29620 5.32714 5.49777 5.51340 5.58047 5.71881 5.77374 5.83336 6.02781 6.15055 6.45888 6.59924 6.63945 6.68356 6.83744 7.29601 7.38501 7.48923 7.67533 8.04006 8.16798 9.07237 9.70056 10.46482 11.31265 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.001662 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.903435 B =16845.387071 C =17213.568986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.115 4.115 4 C -0.631 4.631 5 S 2.614 3.386 6 O -0.953 6.953 7 O -0.952 6.952 8 N -1.108 6.108 9 C 0.095 3.905 10 C 0.514 3.486 11 O -0.528 6.528 12 N -0.693 5.693 13 C 0.093 3.907 14 H 0.133 0.867 15 C -0.178 4.178 16 H 0.104 0.896 17 C 0.184 3.816 18 N -0.593 5.593 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.155 3.845 28 C -0.181 4.181 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.429 0.571 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.401 0.599 43 H 0.092 0.908 44 H 0.026 0.974 45 H 0.256 0.744 46 H 0.052 0.948 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.379 -9.966 6.494 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.154 4.154 4 C -0.761 4.761 5 S 2.706 3.294 6 O -0.943 6.943 7 O -0.942 6.942 8 N -0.871 5.871 9 C -0.035 4.035 10 C 0.298 3.702 11 O -0.404 6.404 12 N -0.342 5.342 13 C -0.013 4.013 14 H 0.150 0.850 15 C -0.199 4.199 16 H 0.122 0.878 17 C 0.058 3.942 18 N -0.316 5.316 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.028 3.972 28 C -0.202 4.202 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.267 0.733 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.235 0.765 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -27.386 -8.601 6.864 29.515 hybrid contribution 1.020 -1.182 -0.652 1.692 sum -26.366 -9.784 6.212 28.801 Atomic orbital electron populations 1.21819 0.95338 1.02109 1.02253 1.21480 0.96212 0.95116 1.02704 1.21387 0.90002 1.00082 1.03899 1.30665 1.06982 1.26425 1.11988 1.04950 0.72731 0.77223 0.74484 1.93617 1.83175 1.71908 1.45572 1.93629 1.82747 1.72795 1.45006 1.55392 1.25871 1.77993 1.27842 1.21097 0.92077 0.99404 0.90931 1.20271 0.87792 0.79719 0.82418 1.90723 1.77183 1.38672 1.33792 1.45299 1.07627 1.54884 1.26390 1.21902 0.77022 1.01091 1.01287 0.84970 1.24644 1.00065 1.02927 0.92280 0.87764 1.21077 0.81758 0.89700 1.01655 1.45167 1.12451 1.37996 1.35987 1.18947 0.89571 1.00650 1.26632 0.90552 1.24906 0.98593 0.95057 1.01600 1.69883 1.40279 1.03614 1.42277 0.86177 0.82915 0.77077 0.79444 1.21079 1.21513 1.20951 1.21132 0.88027 0.96444 0.91554 1.24364 0.97102 0.93765 1.04999 0.87883 0.92338 0.92419 0.92385 0.91443 0.91472 0.90126 0.90162 0.84565 0.84854 0.73266 0.88664 0.87034 0.76455 0.88993 0.95581 0.93418 0.92967 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.91 37.15 0.37 -0.25 16 2 C -0.12 -0.47 5.93 -26.73 -0.16 -0.63 16 3 C -0.11 -0.55 5.22 -26.73 -0.14 -0.68 16 4 C -0.63 -2.58 6.07 37.16 0.23 -2.36 16 5 S 2.61 21.11 5.46 -107.50 -0.59 20.53 16 6 O -0.95 -10.69 17.49 -57.54 -1.01 -11.70 16 7 O -0.95 -11.09 18.08 -57.54 -1.04 -12.13 16 8 N -1.11 -9.26 5.82 -11.65 -0.07 -9.33 16 9 C 0.10 0.69 6.61 -5.19 -0.03 0.65 16 10 C 0.51 6.05 7.90 -10.98 -0.09 5.96 16 11 O -0.53 -8.48 15.29 5.56 0.09 -8.40 16 12 N -0.69 -7.87 5.56 -53.81 -0.30 -8.17 16 13 C 0.09 1.45 5.98 -67.93 -0.41 1.04 16 14 H 0.13 2.40 7.40 -51.93 -0.38 2.02 16 15 C -0.18 -3.16 7.05 -89.29 -0.63 -3.79 16 16 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 17 C 0.18 4.32 5.70 -2.41 -0.01 4.30 16 18 N -0.59 -14.88 3.38 -168.83 -0.57 -15.45 16 19 C -0.23 -6.30 10.35 -15.05 -0.16 -6.45 16 20 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 22 N -0.91 -26.46 10.86 55.49 0.60 -25.86 16 23 Si 0.91 21.60 29.56 -169.99 -5.03 16.58 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.16 3.18 7.04 -2.38 -0.02 3.16 16 28 C -0.18 -3.02 7.05 -89.27 -0.63 -3.64 16 29 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.14 0.36 8.14 -51.92 -0.42 -0.07 16 38 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 39 H 0.43 4.09 7.67 -34.47 -0.26 3.83 16 40 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.66 7.69 -51.93 -0.40 0.26 16 42 H 0.40 3.16 8.83 -40.82 -0.36 2.80 16 43 H 0.09 2.40 6.51 -51.93 -0.34 2.07 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -37.19 399.45 -11.29 -48.49 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.63 Total: 2.32 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.77 Total: -2.90 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.33 Total: -58.80 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.96 Total: -32.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 21.11 SS G_CDS: -0.59 Total: 20.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.19 -11.29 -48.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115180106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.945 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds