Wall clock time and date at job start Wed Apr 1 2020 03:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47311 * 2 1 4 4 C 1.53003 * 109.47528 * 180.02562 * 3 2 1 5 5 S 1.81391 * 109.47442 * 179.97438 * 4 3 2 6 6 O 1.42100 * 110.54527 * 291.62355 * 5 4 3 7 7 O 1.42101 * 110.54422 * 68.37410 * 5 4 3 8 8 N 1.65597 * 104.45176 * 180.02562 * 5 4 3 9 9 C 1.46500 * 120.00284 * 64.99885 * 8 5 4 10 10 C 1.50701 * 109.47199 * 165.00290 * 9 8 5 11 11 O 1.21276 * 120.00120 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99639 * 180.02562 * 10 9 8 13 13 C 1.46492 * 119.99768 * 179.97438 * 12 10 9 14 14 H 1.08999 * 115.51777 * 350.58159 * 13 12 10 15 15 C 1.53003 * 117.44544 * 205.16632 * 13 12 10 16 16 H 1.09000 * 119.53634 * 5.71454 * 15 13 12 17 17 C 1.54385 * 118.12518 * 160.80602 * 15 13 12 18 18 N 1.48145 * 104.61468 * 87.19226 * 17 15 13 19 19 C 1.36946 * 127.83742 * 140.41351 * 18 17 15 20 20 H 1.08003 * 120.00091 * 195.57444 * 19 18 17 21 21 C 1.38815 * 119.99848 * 15.57220 * 19 18 17 22 22 N 1.31616 * 119.99688 * 9.10206 * 21 19 18 23 23 Si 1.86797 * 119.99823 * 189.09525 * 21 19 18 24 24 H 1.48501 * 109.46566 * 60.00649 * 23 21 19 25 25 H 1.48500 * 109.47143 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47252 * 300.00323 * 23 21 19 27 27 C 1.48144 * 104.32708 * 320.41461 * 18 17 15 28 28 C 1.53000 * 117.44559 * 135.99814 * 13 12 10 29 29 H 1.09001 * 119.53380 * 355.87930 * 28 13 12 30 30 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46932 * 300.00153 * 1 2 3 32 32 H 1.08997 * 109.46888 * 60.00009 * 1 2 3 33 33 H 1.09005 * 109.47662 * 239.99705 * 2 1 3 34 34 H 1.09005 * 109.47475 * 119.99868 * 2 1 3 35 35 H 1.08997 * 109.47137 * 299.99838 * 3 2 1 36 36 H 1.08995 * 109.47192 * 60.00033 * 3 2 1 37 37 H 1.09006 * 109.46855 * 300.00152 * 4 3 2 38 38 H 1.09005 * 109.46866 * 59.99755 * 4 3 2 39 39 H 0.97009 * 120.00198 * 245.00435 * 8 5 4 40 40 H 1.09002 * 109.46923 * 285.00725 * 9 8 5 41 41 H 1.09001 * 109.46960 * 45.00093 * 9 8 5 42 42 H 0.97000 * 119.99965 * 0.02562 * 12 10 9 43 43 H 1.08996 * 110.40884 * 205.97751 * 17 15 13 44 44 H 1.08997 * 110.41127 * 328.41306 * 17 15 13 45 45 H 0.97003 * 119.99493 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.40945 * 158.36696 * 27 18 17 47 47 H 1.09001 * 110.41008 * 280.80205 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1527 -0.0014 6 8 3.8781 3.7860 -1.2385 7 8 3.8791 3.7867 1.2355 8 7 5.8243 3.0078 -0.0028 9 6 6.5062 2.4094 -1.1531 10 6 7.9789 2.7211 -1.0821 11 8 8.4160 3.3780 -0.1611 12 7 8.8102 2.2698 -2.0422 13 6 10.2417 2.5733 -1.9735 14 1 10.5324 3.2965 -1.2116 15 6 11.0249 2.5807 -3.2879 16 1 10.4928 2.4572 -4.2311 17 6 12.3816 3.3166 -3.3225 18 7 13.3670 2.3054 -2.8741 19 6 14.6300 2.0909 -3.3580 20 1 15.1497 1.1737 -3.1232 21 6 15.2423 3.0523 -4.1503 22 7 14.6901 4.2388 -4.2901 23 14 16.8499 2.6621 -5.0178 24 1 16.6498 1.5135 -5.9376 25 1 17.2937 3.8474 -5.7945 26 1 17.8844 2.3153 -4.0105 27 6 12.6762 1.5789 -1.7834 28 6 11.2191 1.4353 -2.2747 29 1 10.8350 0.4324 -2.4612 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9337 0.9285 0.8892 38 1 3.9330 0.9288 -0.8909 39 1 6.3392 3.3191 0.7582 40 1 6.3623 1.3290 -1.1390 41 1 6.0920 2.8190 -2.0744 42 1 8.4606 1.7447 -2.7790 43 1 12.6095 3.6460 -4.3362 44 1 12.3709 4.1659 -2.6393 45 1 15.1182 4.9108 -4.8435 46 1 13.1263 0.5971 -1.6359 47 1 12.7114 2.1567 -0.8598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115180106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:56 Heat of formation + Delta-G solvation = -87.370254 kcal Electronic energy + Delta-G solvation = -27369.022411 eV Core-core repulsion = 23293.309308 eV Total energy + Delta-G solvation = -4075.713103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.19269 -39.89816 -38.21261 -37.07698 -36.64270 -36.19512 -35.65123 -34.36625 -32.17183 -31.37461 -28.93082 -28.52841 -27.21305 -25.26267 -23.62120 -22.18060 -21.96295 -21.69764 -20.87756 -20.38517 -19.10391 -18.85101 -18.14454 -17.58983 -17.24412 -17.16330 -16.74576 -16.59806 -16.33568 -15.84233 -15.46483 -15.03624 -14.84649 -14.64712 -14.57181 -14.22810 -14.09551 -13.77456 -13.74878 -13.38017 -13.25353 -13.20334 -13.16463 -13.10583 -12.87836 -12.67755 -12.64121 -12.43740 -12.16211 -12.14089 -12.04843 -11.87266 -11.65957 -11.50881 -11.45031 -11.16248 -10.83431 -10.69386 -10.50041 -9.71849 -8.92548 -7.91858 -5.28873 -0.77626 1.46096 1.47369 1.50361 1.57291 1.58211 2.03444 2.48970 2.81501 2.85969 3.22364 3.28300 3.45520 3.58929 3.65297 3.83798 3.86322 3.94642 4.06762 4.14977 4.23850 4.33577 4.37182 4.39846 4.50623 4.55384 4.62069 4.63458 4.76104 4.83958 4.90742 4.93890 5.00134 5.01508 5.24542 5.29489 5.32411 5.41875 5.44768 5.46607 5.54320 5.64908 5.89753 6.16694 6.50273 7.00010 7.17639 7.67439 8.45474 9.21812 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.001662 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.903435 B =16845.387071 C =17213.568986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C -0.129 4.129 4 C -0.600 4.600 5 S 2.614 3.386 6 O -0.992 6.992 7 O -0.998 6.998 8 N -1.116 6.116 9 C 0.095 3.905 10 C 0.510 3.490 11 O -0.578 6.578 12 N -0.677 5.677 13 C 0.115 3.885 14 H 0.102 0.898 15 C -0.180 4.180 16 H 0.131 0.869 17 C 0.186 3.814 18 N -0.617 5.617 19 C -0.243 4.243 20 H 0.084 0.916 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.146 3.854 28 C -0.160 4.160 29 H 0.142 0.858 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.160 0.840 38 H 0.170 0.830 39 H 0.422 0.578 40 H 0.153 0.847 41 H 0.129 0.871 42 H 0.424 0.576 43 H 0.058 0.942 44 H -0.008 1.008 45 H 0.250 0.750 46 H 0.064 0.936 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.147 -13.604 5.858 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.734 4.734 5 S 2.712 3.288 6 O -0.982 6.982 7 O -0.989 6.989 8 N -0.878 5.878 9 C -0.034 4.034 10 C 0.297 3.703 11 O -0.457 6.457 12 N -0.328 5.328 13 C 0.007 3.993 14 H 0.120 0.880 15 C -0.201 4.201 16 H 0.149 0.851 17 C 0.060 3.940 18 N -0.342 5.342 19 C -0.372 4.372 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.199 1.199 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.021 3.979 28 C -0.181 4.181 29 H 0.160 0.840 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.259 0.741 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.263 0.737 43 H 0.077 0.923 44 H 0.010 0.990 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -29.183 -12.242 6.215 32.251 hybrid contribution 1.511 -0.069 -0.364 1.556 sum -27.672 -12.311 5.851 30.847 Atomic orbital electron populations 1.21865 0.95697 1.02373 1.02093 1.21495 0.95971 0.94350 1.03577 1.21552 0.90416 1.00878 1.03945 1.30424 1.06322 1.21591 1.15058 1.04741 0.72323 0.78980 0.72725 1.93561 1.83585 1.74490 1.46599 1.93564 1.83304 1.75425 1.46591 1.55350 1.25807 1.78661 1.27935 1.21427 0.87976 1.02808 0.91163 1.21139 0.89610 0.78326 0.81250 1.90719 1.78387 1.40762 1.35811 1.45060 1.05410 1.55021 1.27330 1.21357 0.79557 0.99753 0.98619 0.88044 1.24309 0.98265 1.02983 0.94536 0.85129 1.20804 0.85045 0.89471 0.98637 1.45485 1.12529 1.38617 1.37522 1.19375 0.90752 1.00807 1.26223 0.89867 1.25773 1.02137 0.94959 1.02751 1.70097 1.41766 1.04553 1.43211 0.85106 0.78930 0.76711 0.78278 1.19933 1.22135 1.20182 1.21285 0.90395 0.96177 0.90071 1.24258 0.95043 0.95458 1.03324 0.84036 0.91857 0.92759 0.92495 0.90301 0.90822 0.90051 0.90640 0.82158 0.81257 0.74089 0.82970 0.85324 0.73749 0.92329 0.99021 0.94118 0.91717 0.96644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.12 -0.54 5.93 30.59 0.18 -0.36 16 3 C -0.13 -0.86 5.22 30.60 0.16 -0.70 16 4 C -0.60 -2.46 6.07 71.98 0.44 -2.02 16 5 S 2.61 38.43 5.46 -56.49 -0.31 38.13 16 6 O -0.99 -21.30 17.49 -127.65 -2.23 -23.53 16 7 O -1.00 -23.49 18.08 -127.65 -2.31 -25.80 16 8 N -1.12 -16.49 5.82 -190.78 -1.11 -17.60 16 9 C 0.10 1.00 6.61 85.63 0.57 1.57 16 10 C 0.51 10.77 7.90 87.66 0.69 11.46 16 11 O -0.58 -18.37 15.29 -3.02 -0.05 -18.42 16 12 N -0.68 -13.20 5.56 -442.54 -2.46 -15.66 16 13 C 0.11 3.43 5.98 44.99 0.27 3.70 16 14 H 0.10 3.77 7.40 -2.39 -0.02 3.76 16 15 C -0.18 -6.21 7.05 -9.94 -0.07 -6.28 16 16 H 0.13 3.84 8.14 -2.39 -0.02 3.82 16 17 C 0.19 9.10 5.70 86.53 0.49 9.59 16 18 N -0.62 -31.61 3.38 -688.06 -2.32 -33.93 16 19 C -0.24 -13.49 10.35 84.03 0.87 -12.62 16 20 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 21 C -0.06 -3.53 5.40 84.86 0.46 -3.07 16 22 N -0.95 -57.10 10.86 21.65 0.24 -56.86 16 23 Si 0.98 45.00 29.56 68.60 2.03 47.03 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 C 0.15 5.93 7.04 86.55 0.61 6.54 16 28 C -0.16 -4.95 7.05 -9.92 -0.07 -5.02 16 29 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.17 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.42 7.84 7.67 -96.73 -0.74 7.10 16 40 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.13 0.99 7.69 -2.39 -0.02 0.97 16 42 H 0.42 4.58 8.83 -92.71 -0.82 3.76 16 43 H 0.06 3.22 6.51 -2.39 -0.02 3.20 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -87.31 399.45 -3.79 -91.10 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.58 Total: 13.00 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.31 Total: 2.57 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.66 Total: -124.06 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -4.59 Total: -67.75 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 38.43 SS G_CDS: -0.31 Total: 38.13 kcal Total: -87.31 -3.79 -91.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115180106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.733 kcal (2) G-P(sol) polarization free energy of solvation -87.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds