Wall clock time and date at job start Wed Apr 1 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47035 * 2 1 4 4 C 1.53002 * 109.46698 * 240.00420 * 2 1 3 5 5 N 1.46497 * 109.47140 * 120.00421 * 2 1 3 6 6 S 1.65601 * 119.99984 * 36.33261 * 5 2 1 7 7 O 1.42099 * 104.28027 * 303.52322 * 6 5 2 8 8 O 1.42103 * 104.27658 * 175.66345 * 6 5 2 9 9 C 1.81405 * 104.44534 * 59.59638 * 6 5 2 10 10 C 1.50705 * 109.46697 * 170.78120 * 9 6 5 11 11 O 1.21277 * 120.00335 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99651 * 179.97438 * 10 9 6 13 13 C 1.46504 * 119.99746 * 180.02562 * 12 10 9 14 14 H 1.08997 * 115.49411 * 9.62028 * 13 12 10 15 15 C 1.57265 * 116.89754 * 223.09567 * 13 12 10 16 16 H 1.09004 * 120.67361 * 3.42478 * 15 13 12 17 17 C 1.54386 * 118.11204 * 161.54359 * 15 13 12 18 18 N 1.48148 * 104.72290 * 86.05082 * 17 15 13 19 19 C 1.36926 * 127.84029 * 140.35577 * 18 17 15 20 20 H 1.08001 * 120.00203 * 198.49574 * 19 18 17 21 21 C 1.38812 * 120.00108 * 18.49453 * 19 18 17 22 22 N 1.31619 * 120.00127 * 7.81732 * 21 19 18 23 23 Si 1.86804 * 120.00211 * 187.81531 * 21 19 18 24 24 H 1.48501 * 109.47062 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47045 * 119.99902 * 23 21 19 26 26 H 1.48497 * 109.47115 * 240.00003 * 23 21 19 27 27 C 1.48155 * 104.32097 * 320.35880 * 18 17 15 28 28 C 1.52996 * 117.44334 * 155.00065 * 13 12 10 29 29 H 1.09004 * 119.54099 * 354.28221 * 28 13 12 30 30 H 1.08999 * 109.47049 * 299.99825 * 1 2 3 31 31 H 1.08999 * 109.47278 * 59.99557 * 1 2 3 32 32 H 1.08995 * 109.47517 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46641 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47350 * 300.00020 * 3 2 1 35 35 H 1.09005 * 109.46768 * 60.00804 * 3 2 1 36 36 H 1.08991 * 109.47231 * 307.60721 * 4 2 1 37 37 H 1.08998 * 109.47235 * 67.61224 * 4 2 1 38 38 H 1.09007 * 109.46811 * 187.60709 * 4 2 1 39 39 H 0.97001 * 120.00373 * 216.33647 * 5 2 1 40 40 H 1.08990 * 109.47442 * 50.78513 * 9 6 5 41 41 H 1.08999 * 109.47396 * 290.77712 * 9 6 5 42 42 H 0.96993 * 120.00199 * 359.97438 * 12 10 9 43 43 H 1.08997 * 110.40529 * 327.20877 * 17 15 13 44 44 H 1.08996 * 110.40827 * 204.89489 * 17 15 13 45 45 H 0.96992 * 120.00380 * 180.02562 * 22 21 19 46 46 H 1.09001 * 110.40207 * 158.37083 * 27 18 17 47 47 H 1.09005 * 110.40438 * 280.79828 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 16 1.2051 -2.0095 1.7807 7 8 -0.1167 -1.5367 2.0013 8 8 2.0090 -2.4671 2.8594 9 6 1.2349 -3.2020 0.4140 10 6 0.7215 -4.5336 0.8981 11 8 0.3697 -4.6651 2.0513 12 7 0.6524 -5.5782 0.0492 13 6 0.1528 -6.8726 0.5196 14 1 -0.2936 -6.8699 1.5140 15 6 0.9423 -8.1511 0.0557 16 1 1.8503 -8.0583 -0.5402 17 6 0.7368 -9.4602 0.8478 18 7 -0.4580 -10.0871 0.2359 19 6 -0.6688 -11.4143 -0.0265 20 1 -1.4317 -11.7109 -0.7311 21 6 0.0980 -12.3786 0.6129 22 7 0.9188 -12.0311 1.5814 23 14 -0.0349 -14.1697 0.0990 24 1 -1.0203 -14.2961 -1.0047 25 1 1.2911 -14.6513 -0.3643 26 1 -0.4808 -14.9851 1.2572 27 6 -1.3729 -8.9520 -0.0276 28 6 -0.4518 -7.8159 -0.5222 29 1 -0.5805 -7.4717 -1.5484 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.5698 -1.7019 -1.3200 37 1 1.7920 -0.1347 -2.1340 38 1 3.1214 -0.8405 -1.1840 39 1 2.8180 -0.3755 1.6457 40 1 2.2571 -3.3160 0.0536 41 1 0.6017 -2.8415 -0.3967 42 1 0.9327 -5.4727 -0.8734 43 1 0.5550 -9.2430 1.9003 44 1 1.6048 -10.1105 0.7392 45 1 1.4549 -12.7048 2.0280 46 1 -2.0960 -9.2179 -0.7986 47 1 -1.8841 -8.6553 0.8882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115254218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:41 Heat of formation + Delta-G solvation = -39.748225 kcal Electronic energy + Delta-G solvation = -28619.243888 eV Core-core repulsion = 24545.595831 eV Total energy + Delta-G solvation = -4073.648057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.04027 -38.64325 -38.34080 -37.14972 -36.10290 -34.66212 -32.86008 -31.45554 -31.08614 -29.86244 -27.87097 -27.78058 -27.20900 -25.62260 -22.39783 -21.17075 -20.84097 -20.37458 -19.44862 -19.29648 -18.25509 -17.21800 -16.94023 -16.81531 -16.71983 -16.00107 -15.79136 -14.96766 -14.79057 -14.69794 -14.50200 -14.29827 -13.68866 -13.54633 -13.33979 -13.04175 -12.98321 -12.78991 -12.77278 -12.35896 -12.33005 -12.10449 -12.01187 -11.95421 -11.79344 -11.62971 -11.56423 -11.31259 -11.06816 -11.01136 -10.87624 -10.51642 -10.39539 -10.29431 -10.15003 -10.03108 -9.79382 -9.28343 -8.79805 -8.40877 -6.87693 -5.83357 -3.19428 -0.12251 2.19224 2.36859 2.77271 3.35818 3.41734 3.44493 3.58204 3.84355 4.02323 4.14487 4.18577 4.31636 4.38466 4.43430 4.54443 4.63328 4.81530 4.98327 5.00643 5.05107 5.20224 5.25875 5.29617 5.32024 5.33328 5.51475 5.54402 5.60700 5.76245 5.77823 5.81766 5.92633 5.98022 6.15982 6.43629 6.55505 6.60253 6.64503 6.83436 7.22513 7.32104 7.51013 7.68539 7.87302 8.17142 9.07305 9.69815 10.47570 11.31383 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.002024 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.321298 B =13827.335168 C =14077.859348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.165 3.835 3 C -0.149 4.149 4 C -0.183 4.183 5 N -1.114 6.114 6 S 2.646 3.354 7 O -0.938 6.938 8 O -0.938 6.938 9 C -0.680 4.680 10 C 0.543 3.457 11 O -0.530 6.530 12 N -0.681 5.681 13 C 0.086 3.914 14 H 0.139 0.861 15 C -0.178 4.178 16 H 0.106 0.894 17 C 0.185 3.815 18 N -0.592 5.592 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.912 5.912 23 Si 0.914 3.086 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.153 3.847 28 C -0.176 4.176 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.419 0.581 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.402 0.598 43 H 0.029 0.971 44 H 0.088 0.912 45 H 0.255 0.745 46 H 0.053 0.947 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 28.346 -8.947 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.076 3.924 3 C -0.207 4.207 4 C -0.241 4.241 5 N -0.874 5.874 6 S 2.733 3.267 7 O -0.927 6.927 8 O -0.928 6.928 9 C -0.807 4.807 10 C 0.327 3.673 11 O -0.407 6.407 12 N -0.329 5.329 13 C -0.020 4.020 14 H 0.156 0.844 15 C -0.199 4.199 16 H 0.124 0.876 17 C 0.059 3.941 18 N -0.316 5.316 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.558 5.558 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.027 3.973 28 C -0.197 4.197 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.254 0.746 40 H 0.180 0.820 41 H 0.178 0.822 42 H 0.237 0.763 43 H 0.047 0.953 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.584 27.790 -7.318 28.960 hybrid contribution 0.842 -0.894 -1.552 1.979 sum 4.425 26.897 -8.870 28.665 Atomic orbital electron populations 1.22614 0.92738 1.03937 1.04357 1.20280 0.94466 0.93703 0.83909 1.22039 1.01607 0.93889 1.03197 1.22652 1.02534 1.01195 0.97755 1.55945 1.44083 1.46408 1.40987 1.04181 0.74634 0.73571 0.74300 1.93633 1.38288 1.77776 1.83044 1.93609 1.69655 1.81066 1.48439 1.31416 1.12327 1.12101 1.24838 1.19050 0.78363 0.84012 0.85898 1.90883 1.48789 1.83848 1.17214 1.45194 1.64409 1.09856 1.13426 1.22729 1.02200 0.78007 0.99066 0.84365 1.25488 0.94741 0.95352 1.04349 0.87640 1.21034 0.92573 0.87495 0.93027 1.45164 1.12717 1.01691 1.71978 1.19005 1.18359 0.79593 1.18858 0.90547 1.24983 1.00146 0.98224 0.96798 1.69910 1.28877 1.32646 1.24335 0.86034 0.77374 0.84474 0.77764 1.20327 1.21614 1.21584 1.21155 0.91846 0.86774 0.97560 1.24382 0.98561 0.99222 0.97568 0.87955 0.89781 0.90696 0.91756 0.91821 0.90962 0.91497 0.91986 0.90574 0.91221 0.74614 0.82020 0.82154 0.76322 0.95295 0.89410 0.93477 0.92858 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 7.06 37.16 0.26 -0.87 16 2 C 0.16 0.82 1.15 -131.82 -0.15 0.67 16 3 C -0.15 -0.53 8.65 37.16 0.32 -0.21 16 4 C -0.18 -0.60 8.38 37.16 0.31 -0.29 16 5 N -1.11 -7.25 5.41 0.54 0.00 -7.25 16 6 S 2.65 29.07 4.26 -107.50 -0.46 28.61 16 7 O -0.94 -12.83 14.54 -57.54 -0.84 -13.67 16 8 O -0.94 -14.33 17.70 -61.80 -1.09 -15.43 16 9 C -0.68 -5.59 4.77 36.01 0.17 -5.42 16 10 C 0.54 7.38 7.85 -10.98 -0.09 7.30 16 11 O -0.53 -9.77 15.14 -0.87 -0.01 -9.79 16 12 N -0.68 -8.57 5.57 -51.56 -0.29 -8.85 16 13 C 0.09 1.41 6.19 -65.61 -0.41 1.00 16 14 H 0.14 2.60 7.40 -51.93 -0.38 2.22 16 15 C -0.18 -3.29 7.26 -86.74 -0.63 -3.92 16 16 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 17 C 0.18 4.44 5.67 -2.41 -0.01 4.42 16 18 N -0.59 -15.06 3.37 -168.86 -0.57 -15.63 16 19 C -0.23 -6.36 10.34 -15.06 -0.16 -6.51 16 20 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 21 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 22 N -0.91 -26.75 10.97 55.49 0.61 -26.14 16 23 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.15 3.18 7.03 -2.41 -0.02 3.16 16 28 C -0.18 -3.00 6.91 -89.06 -0.62 -3.61 16 29 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.08 0.66 7.61 -51.93 -0.40 0.27 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 5.08 -51.93 -0.26 0.19 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.17 4.92 -51.93 -0.26 -0.09 16 37 H 0.08 0.17 8.13 -51.93 -0.42 -0.25 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.42 2.06 8.69 -34.47 -0.30 1.76 16 40 H 0.16 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.16 0.77 5.57 -51.92 -0.29 0.48 16 42 H 0.40 3.54 8.83 -40.82 -0.36 3.18 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 2.34 6.68 -51.93 -0.35 1.99 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -37.81 383.07 -10.21 -48.02 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.21 Total: 2.06 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.10 Total: -4.47 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.24 Total: -57.88 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.94 Total: -38.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 16 Polarization: 29.07 SS G_CDS: -0.46 Total: 28.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.81 -10.21 -48.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115254218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.276 kcal (2) G-P(sol) polarization free energy of solvation -37.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds