Wall clock time and date at job start Wed Apr 1 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47035 * 2 1 4 4 C 1.53002 * 109.46698 * 240.00420 * 2 1 3 5 5 N 1.46497 * 109.47140 * 120.00421 * 2 1 3 6 6 S 1.65601 * 119.99984 * 36.33261 * 5 2 1 7 7 O 1.42099 * 104.28027 * 303.52322 * 6 5 2 8 8 O 1.42103 * 104.27658 * 175.66345 * 6 5 2 9 9 C 1.81405 * 104.44534 * 59.59638 * 6 5 2 10 10 C 1.50705 * 109.46697 * 170.78120 * 9 6 5 11 11 O 1.21277 * 120.00335 * 0.02562 * 10 9 6 12 12 N 1.34781 * 119.99651 * 179.97438 * 10 9 6 13 13 C 1.46504 * 119.99746 * 180.02562 * 12 10 9 14 14 H 1.08997 * 115.49411 * 9.62028 * 13 12 10 15 15 C 1.57265 * 116.89754 * 223.09567 * 13 12 10 16 16 H 1.09004 * 120.67361 * 3.42478 * 15 13 12 17 17 C 1.54386 * 118.11204 * 161.54359 * 15 13 12 18 18 N 1.48148 * 104.72290 * 86.05082 * 17 15 13 19 19 C 1.36926 * 127.84029 * 140.35577 * 18 17 15 20 20 H 1.08001 * 120.00203 * 198.49574 * 19 18 17 21 21 C 1.38812 * 120.00108 * 18.49453 * 19 18 17 22 22 N 1.31619 * 120.00127 * 7.81732 * 21 19 18 23 23 Si 1.86804 * 120.00211 * 187.81531 * 21 19 18 24 24 H 1.48501 * 109.47062 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47045 * 119.99902 * 23 21 19 26 26 H 1.48497 * 109.47115 * 240.00003 * 23 21 19 27 27 C 1.48155 * 104.32097 * 320.35880 * 18 17 15 28 28 C 1.52996 * 117.44334 * 155.00065 * 13 12 10 29 29 H 1.09004 * 119.54099 * 354.28221 * 28 13 12 30 30 H 1.08999 * 109.47049 * 299.99825 * 1 2 3 31 31 H 1.08999 * 109.47278 * 59.99557 * 1 2 3 32 32 H 1.08995 * 109.47517 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46641 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47350 * 300.00020 * 3 2 1 35 35 H 1.09005 * 109.46768 * 60.00804 * 3 2 1 36 36 H 1.08991 * 109.47231 * 307.60721 * 4 2 1 37 37 H 1.08998 * 109.47235 * 67.61224 * 4 2 1 38 38 H 1.09007 * 109.46811 * 187.60709 * 4 2 1 39 39 H 0.97001 * 120.00373 * 216.33647 * 5 2 1 40 40 H 1.08990 * 109.47442 * 50.78513 * 9 6 5 41 41 H 1.08999 * 109.47396 * 290.77712 * 9 6 5 42 42 H 0.96993 * 120.00199 * 359.97438 * 12 10 9 43 43 H 1.08997 * 110.40529 * 327.20877 * 17 15 13 44 44 H 1.08996 * 110.40827 * 204.89489 * 17 15 13 45 45 H 0.96992 * 120.00380 * 180.02562 * 22 21 19 46 46 H 1.09001 * 110.40207 * 158.37083 * 27 18 17 47 47 H 1.09005 * 110.40438 * 280.79828 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 16 1.2051 -2.0095 1.7807 7 8 -0.1167 -1.5367 2.0013 8 8 2.0090 -2.4671 2.8594 9 6 1.2349 -3.2020 0.4140 10 6 0.7215 -4.5336 0.8981 11 8 0.3697 -4.6651 2.0513 12 7 0.6524 -5.5782 0.0492 13 6 0.1528 -6.8726 0.5196 14 1 -0.2936 -6.8699 1.5140 15 6 0.9423 -8.1511 0.0557 16 1 1.8503 -8.0583 -0.5402 17 6 0.7368 -9.4602 0.8478 18 7 -0.4580 -10.0871 0.2359 19 6 -0.6688 -11.4143 -0.0265 20 1 -1.4317 -11.7109 -0.7311 21 6 0.0980 -12.3786 0.6129 22 7 0.9188 -12.0311 1.5814 23 14 -0.0349 -14.1697 0.0990 24 1 -1.0203 -14.2961 -1.0047 25 1 1.2911 -14.6513 -0.3643 26 1 -0.4808 -14.9851 1.2572 27 6 -1.3729 -8.9520 -0.0276 28 6 -0.4518 -7.8159 -0.5222 29 1 -0.5805 -7.4717 -1.5484 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.5698 -1.7019 -1.3200 37 1 1.7920 -0.1347 -2.1340 38 1 3.1214 -0.8405 -1.1840 39 1 2.8180 -0.3755 1.6457 40 1 2.2571 -3.3160 0.0536 41 1 0.6017 -2.8415 -0.3967 42 1 0.9327 -5.4727 -0.8734 43 1 0.5550 -9.2430 1.9003 44 1 1.6048 -10.1105 0.7392 45 1 1.4549 -12.7048 2.0280 46 1 -2.0960 -9.2179 -0.7986 47 1 -1.8841 -8.6553 0.8882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115254218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:40 Heat of formation + Delta-G solvation = -70.739057 kcal Electronic energy + Delta-G solvation = -28620.587752 eV Core-core repulsion = 24545.595831 eV Total energy + Delta-G solvation = -4074.991920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26354 -39.86260 -39.13644 -38.01740 -37.05188 -36.18862 -34.52360 -32.53718 -31.91620 -31.15719 -28.95938 -28.25383 -28.06040 -27.50370 -23.93522 -22.18007 -22.07223 -21.48109 -20.85718 -20.20150 -19.10714 -18.87894 -18.18691 -17.83235 -17.49052 -17.12855 -16.73374 -16.51891 -15.84568 -15.68949 -15.35883 -15.11670 -14.92505 -14.85611 -14.65552 -14.19703 -13.87395 -13.70581 -13.49773 -13.38576 -13.25136 -13.21013 -13.10566 -12.92380 -12.76571 -12.69393 -12.49822 -12.40025 -12.33807 -12.17728 -12.03225 -11.95678 -11.93698 -11.72219 -11.64763 -11.42752 -10.86244 -10.77752 -10.52397 -9.79339 -8.92101 -7.94389 -5.33069 -0.93882 1.13847 1.46133 1.46620 1.54905 1.58352 1.85535 2.46526 2.70997 2.76296 3.11809 3.21543 3.30269 3.53880 3.69530 3.75198 3.87512 3.89325 3.97709 4.07227 4.09647 4.11716 4.35973 4.39338 4.50037 4.71048 4.73559 4.82837 4.85498 4.92761 4.97878 4.99333 5.06859 5.22541 5.28300 5.32960 5.34929 5.41530 5.49428 5.49841 5.50464 5.61294 6.11547 6.14738 6.18255 6.90698 6.97713 7.64716 8.43977 9.20234 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.002024 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.321298 B =13827.335168 C =14077.859348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.160 3.840 3 C -0.149 4.149 4 C -0.187 4.187 5 N -1.099 6.099 6 S 2.643 3.357 7 O -0.977 6.977 8 O -0.993 6.993 9 C -0.659 4.659 10 C 0.535 3.465 11 O -0.586 6.586 12 N -0.662 5.662 13 C 0.102 3.898 14 H 0.108 0.892 15 C -0.183 4.183 16 H 0.132 0.868 17 C 0.187 3.813 18 N -0.616 5.616 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.289 1.289 26 H -0.294 1.294 27 C 0.144 3.856 28 C -0.149 4.149 29 H 0.146 0.854 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.427 0.573 40 H 0.208 0.792 41 H 0.205 0.795 42 H 0.427 0.573 43 H -0.008 1.008 44 H 0.054 0.946 45 H 0.250 0.750 46 H 0.069 0.931 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 30.096 -13.118 33.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.073 3.927 3 C -0.208 4.208 4 C -0.245 4.245 5 N -0.863 5.863 6 S 2.734 3.266 7 O -0.966 6.966 8 O -0.983 6.983 9 C -0.789 4.789 10 C 0.321 3.679 11 O -0.467 6.467 12 N -0.311 5.311 13 C -0.005 4.005 14 H 0.126 0.874 15 C -0.204 4.204 16 H 0.150 0.850 17 C 0.061 3.939 18 N -0.341 5.341 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.258 4.258 22 N -0.596 5.596 23 Si 0.811 3.189 24 H -0.185 1.185 25 H -0.216 1.216 26 H -0.221 1.221 27 C 0.018 3.982 28 C -0.169 4.169 29 H 0.164 0.836 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.264 0.736 40 H 0.225 0.775 41 H 0.222 0.778 42 H 0.267 0.733 43 H 0.010 0.990 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.089 29.610 -11.523 32.035 hybrid contribution 0.618 -1.344 -0.248 1.500 sum 4.707 28.266 -11.771 30.979 Atomic orbital electron populations 1.22693 0.93987 1.03461 1.04344 1.20536 0.93606 0.94683 0.83922 1.22073 1.02354 0.92881 1.03495 1.22708 1.03260 1.01641 0.96874 1.55586 1.43977 1.44957 1.41754 1.03766 0.73718 0.74391 0.74723 1.93596 1.40136 1.78665 1.84245 1.93541 1.70484 1.82301 1.51960 1.31307 1.15819 1.07480 1.24264 1.19857 0.77297 0.85637 0.85121 1.90885 1.51013 1.84958 1.19873 1.44916 1.63747 1.07893 1.14578 1.22237 1.00897 0.79335 0.98073 0.87370 1.25161 0.96824 0.93855 1.04585 0.85008 1.20744 0.91144 0.89847 0.92116 1.45478 1.14340 1.02257 1.71983 1.19427 1.18011 0.80985 1.18487 0.89763 1.25874 1.00272 1.02567 0.97111 1.70119 1.30054 1.33624 1.25834 0.84950 0.77461 0.79039 0.77463 1.18504 1.21615 1.22116 1.21327 0.92352 0.86826 0.97690 1.24272 0.95674 0.97647 0.99345 0.83610 0.92257 0.88347 0.92480 0.90689 0.89309 0.92631 0.91038 0.88952 0.90168 0.73604 0.77453 0.77847 0.73348 0.99012 0.92741 0.94096 0.91278 0.96515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 7.06 71.98 0.51 -1.49 16 2 C 0.16 1.13 1.15 3.60 0.00 1.14 16 3 C -0.15 -0.67 8.65 71.98 0.62 -0.05 16 4 C -0.19 -0.32 8.38 71.98 0.60 0.29 16 5 N -1.10 -12.40 5.41 -152.22 -0.82 -13.22 16 6 S 2.64 56.37 4.26 -56.49 -0.24 56.13 16 7 O -0.98 -27.26 14.54 -127.65 -1.86 -29.12 16 8 O -0.99 -31.23 17.70 -123.57 -2.19 -33.42 16 9 C -0.66 -8.48 4.77 71.24 0.34 -8.14 16 10 C 0.53 13.42 7.85 87.66 0.69 14.11 16 11 O -0.59 -21.92 15.14 3.12 0.05 -21.87 16 12 N -0.66 -14.41 5.57 -435.44 -2.43 -16.83 16 13 C 0.10 3.22 6.19 46.49 0.29 3.51 16 14 H 0.11 4.19 7.40 -2.39 -0.02 4.17 16 15 C -0.18 -6.56 7.26 -8.28 -0.06 -6.62 16 16 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 17 C 0.19 9.37 5.67 86.53 0.49 9.86 16 18 N -0.62 -31.87 3.37 -688.15 -2.32 -34.19 16 19 C -0.24 -13.42 10.34 84.04 0.87 -12.55 16 20 H 0.08 4.45 7.84 -2.91 -0.02 4.42 16 21 C -0.06 -3.68 5.40 84.86 0.46 -3.22 16 22 N -0.95 -57.96 10.97 21.65 0.24 -57.72 16 23 Si 0.98 45.42 29.56 68.60 2.03 47.45 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 C 0.14 5.86 7.03 86.53 0.61 6.46 16 28 C -0.15 -4.66 6.91 -9.78 -0.07 -4.72 16 29 H 0.15 3.40 8.14 -2.38 -0.02 3.38 16 30 H 0.06 0.93 7.61 -2.39 -0.02 0.91 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.68 5.08 -2.39 -0.01 0.67 16 33 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 34 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.07 -0.03 4.92 -2.39 -0.01 -0.04 16 37 H 0.09 -0.08 8.13 -2.39 -0.02 -0.10 16 38 H 0.08 0.02 8.14 -2.38 -0.02 0.00 16 39 H 0.43 3.61 8.69 -96.75 -0.84 2.77 16 40 H 0.21 0.79 8.08 -2.40 -0.02 0.77 16 41 H 0.20 0.87 5.57 -2.39 -0.01 0.85 16 42 H 0.43 5.14 8.83 -92.71 -0.82 4.32 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.05 3.05 6.68 -2.39 -0.02 3.03 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -90.25 383.07 -2.84 -93.09 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -0.65 Total: 11.13 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.35 Total: -1.43 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -5.33 Total: -121.96 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -4.00 Total: -84.41 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 56.37 SS G_CDS: -0.24 Total: 56.13 kcal Total: -90.25 -2.84 -93.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115254218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.351 kcal (2) G-P(sol) polarization free energy of solvation -90.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds