Wall clock time and date at job start Wed Apr 1 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00145 * 2 1 4 4 C 1.52997 * 109.47121 * 270.00273 * 3 2 1 5 5 C 1.52998 * 109.47265 * 299.99834 * 4 3 2 6 6 C 1.52994 * 109.47297 * 59.99842 * 4 3 2 7 7 C 1.47206 * 109.46954 * 179.97438 * 4 3 2 8 8 N 4.80459 * 118.48571 * 340.02755 * 2 1 3 9 9 C 1.34781 * 119.99861 * 180.02562 * 2 1 3 10 10 O 1.21360 * 119.99742 * 181.30558 * 9 2 1 11 11 C 1.49314 * 119.99931 * 1.30344 * 9 2 1 12 12 O 1.21391 * 120.00485 * 354.55014 * 11 9 2 13 13 N 1.34773 * 120.00107 * 174.54342 * 11 9 2 14 14 C 1.39742 * 120.00252 * 173.28286 * 13 11 9 15 15 C 1.38992 * 120.00891 * 320.23264 * 14 13 11 16 16 C 1.37967 * 119.99348 * 180.02562 * 15 14 13 17 17 C 1.38935 * 120.00629 * 0.02562 * 16 15 14 18 18 O 1.35761 * 119.99277 * 179.97438 * 17 16 15 19 19 C 1.34802 * 117.00084 * 0.99510 * 18 17 16 20 20 H 1.07994 * 119.99768 * 355.37231 * 19 18 17 21 21 C 1.38647 * 119.99915 * 175.36228 * 19 18 17 22 22 N 1.31561 * 119.99965 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00300 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46888 * 89.99506 * 23 21 19 25 25 H 1.48499 * 109.47273 * 209.99614 * 23 21 19 26 26 H 1.48497 * 109.47091 * 329.99916 * 23 21 19 27 27 C 1.38930 * 120.01747 * 0.25499 * 17 16 15 28 28 C 1.37978 * 120.00623 * 359.48769 * 27 17 16 29 29 H 1.09006 * 109.47340 * 263.36809 * 1 2 3 30 30 H 1.09002 * 109.47100 * 23.36677 * 1 2 3 31 31 H 1.09002 * 109.47532 * 143.36628 * 1 2 3 32 32 H 1.09007 * 109.47203 * 30.00072 * 3 2 1 33 33 H 1.08994 * 109.47381 * 149.99976 * 3 2 1 34 34 H 1.09003 * 109.46977 * 59.99577 * 5 4 3 35 35 H 1.08999 * 109.47353 * 180.02562 * 5 4 3 36 36 H 1.09006 * 109.46921 * 300.00693 * 5 4 3 37 37 H 1.09007 * 109.47029 * 60.00199 * 6 4 3 38 38 H 1.08999 * 109.47451 * 179.97438 * 6 4 3 39 39 H 1.08997 * 109.47573 * 300.00077 * 6 4 3 40 40 H 0.97005 * 120.00134 * 353.29624 * 13 11 9 41 41 H 1.08000 * 120.00547 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.99861 * 179.97438 * 16 15 14 43 43 H 0.97003 * 120.00070 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.00350 * 179.72480 * 27 17 16 45 45 H 1.07993 * 120.00605 * 180.23669 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2793 0.6441 -2.1638 6 6 1.1156 1.8933 -2.1637 7 6 3.1880 2.9855 -1.4424 8 7 3.7565 3.9689 -1.4424 9 6 2.1389 -1.1673 -0.0005 10 8 3.3522 -1.1674 0.0234 11 6 1.3926 -2.4601 -0.0305 12 8 0.1810 -2.4636 0.0454 13 7 2.0640 -3.6234 -0.1421 14 6 1.3816 -4.8377 -0.0293 15 6 0.3749 -4.9840 0.9178 16 6 -0.2982 -6.1831 1.0292 17 6 0.0304 -7.2445 0.1951 18 8 -0.6318 -8.4245 0.3053 19 6 -1.6105 -8.4931 1.2298 20 1 -1.7869 -7.6586 1.8922 21 6 -2.3907 -9.6348 1.3300 22 7 -3.3462 -9.7015 2.2319 23 14 -2.0853 -11.0783 0.1844 24 1 -1.0976 -11.9996 0.8016 25 1 -3.3601 -11.8034 -0.0490 26 1 -1.5554 -10.5795 -1.1100 27 6 1.0405 -7.1005 -0.7478 28 6 1.7105 -5.8999 -0.8633 29 1 -0.3634 -0.1187 1.0208 30 1 -0.3633 0.9434 -0.4076 31 1 -0.3634 -0.8247 -0.6132 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.7343 -0.2999 -2.1637 35 1 3.4613 0.9590 -3.1913 36 1 4.2317 0.5137 -1.6499 37 1 0.5266 2.6530 -1.6498 38 1 1.2972 2.2084 -3.1912 39 1 0.5706 0.9494 -2.1637 40 1 3.0210 -3.6178 -0.3004 41 1 0.1202 -4.1594 1.5671 42 1 -1.0802 -6.2971 1.7654 43 1 -3.8919 -10.5004 2.3022 44 1 1.2988 -7.9271 -1.3931 45 1 2.4931 -5.7867 -1.5989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117754344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:38 Heat of formation + Delta-G solvation = -19.047637 kcal Electronic energy + Delta-G solvation = -29352.806344 eV Core-core repulsion = 25144.611980 eV Total energy + Delta-G solvation = -4208.194364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36298 -39.82995 -38.88978 -38.04053 -36.95058 -36.24986 -34.52401 -33.82495 -32.40518 -30.43209 -28.82148 -28.54450 -27.88925 -26.71417 -25.38886 -24.30835 -22.91696 -22.24931 -20.95303 -19.97005 -18.39923 -17.85582 -17.80504 -17.49539 -17.24150 -16.45105 -16.23286 -15.65849 -15.17128 -14.99674 -14.77938 -14.36570 -14.11142 -13.97684 -13.88870 -13.83068 -13.63391 -13.58481 -13.24212 -13.11611 -12.88979 -12.85685 -12.46582 -12.36413 -12.29340 -12.18198 -12.05964 -11.84559 -11.79112 -11.68460 -11.42819 -11.37001 -10.98390 -10.89109 -10.25879 -9.83694 -9.58291 -9.39761 -9.17511 -8.85253 -8.41186 -7.21683 -6.48538 -4.14406 1.11343 1.92815 1.98724 2.08299 2.32238 2.37368 3.03742 3.18798 3.19788 3.21553 3.35455 3.49184 4.11067 4.14823 4.17711 4.26096 4.37937 4.38501 4.75199 4.82513 4.86123 5.02926 5.04614 5.12449 5.20344 5.31342 5.34765 5.39316 5.44568 5.49533 5.56206 5.69009 5.77380 5.85795 5.97892 5.98497 6.07625 6.43787 6.56007 6.65275 6.76809 6.92790 7.08074 7.15394 7.20411 7.46598 7.53371 7.70250 7.91968 7.99747 8.85813 9.46227 10.58520 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.001967 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.896887 B =14234.927179 C =14631.171166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.584 5.584 3 C 0.125 3.875 4 C 0.018 3.982 5 C -0.137 4.137 6 C -0.147 4.147 7 C 0.219 3.781 8 N -0.428 5.428 9 C 0.511 3.489 10 O -0.515 6.515 11 C 0.497 3.503 12 O -0.499 6.499 13 N -0.627 5.627 14 C 0.033 3.967 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.157 3.843 18 O -0.211 6.211 19 C -0.390 4.390 20 H 0.108 0.892 21 C 0.064 3.936 22 N -0.875 5.875 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.178 4.178 28 C -0.084 4.084 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.413 0.587 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.281 0.719 44 H 0.123 0.877 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 19.473 -7.200 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.317 5.317 3 C 0.000 4.000 4 C 0.013 3.987 5 C -0.195 4.195 6 C -0.205 4.205 7 C -0.100 4.100 8 N -0.102 5.102 9 C 0.294 3.706 10 O -0.390 6.390 11 C 0.278 3.722 12 O -0.374 6.374 13 N -0.273 5.273 14 C -0.059 4.059 15 C -0.077 4.077 16 C -0.227 4.227 17 C 0.104 3.896 18 O -0.116 6.116 19 C -0.466 4.466 20 H 0.126 0.874 21 C -0.140 4.140 22 N -0.512 5.512 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.198 4.198 28 C -0.104 4.104 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.250 0.750 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.091 0.909 44 H 0.141 0.859 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.779 20.628 -7.111 23.911 hybrid contribution 0.117 -0.832 -0.303 0.893 sum 9.896 19.796 -7.414 23.340 Atomic orbital electron populations 1.22573 0.76891 1.04391 1.04266 1.47559 1.08449 1.04434 1.71271 1.21551 0.99431 0.85199 0.93794 1.18713 0.95157 0.86227 0.98619 1.21914 1.00444 0.97047 1.00131 1.22051 0.94040 1.03741 1.00712 1.28848 0.93536 0.94112 0.93540 1.81243 1.09332 1.11774 1.07881 1.20191 0.87510 0.85172 0.77768 1.90774 1.13157 1.87192 1.47880 1.19974 0.87761 0.85008 0.79430 1.90753 1.13081 1.86406 1.47188 1.42888 1.12081 1.03509 1.68870 1.17198 1.01635 0.85312 1.01764 1.20647 0.94650 0.96852 0.95571 1.21172 1.04519 0.92971 1.04079 1.19173 0.91567 0.85584 0.93298 1.83567 1.44949 1.28832 1.54228 1.20789 1.09459 1.04954 1.11356 0.87445 1.24489 0.94218 0.98288 0.96994 1.69647 1.18764 1.29751 1.33032 0.86169 0.77834 0.81132 0.81713 1.19823 1.20758 1.18280 1.20004 0.99440 0.98231 1.02129 1.20414 1.00194 0.92262 0.97524 0.91604 0.90968 0.87357 0.88741 0.88325 0.90942 0.91759 0.90696 0.91407 0.91336 0.89821 0.74994 0.86501 0.84379 0.90923 0.85854 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 8.12 59.85 0.49 0.88 16 2 N -0.58 -4.34 2.40 -182.14 -0.44 -4.78 16 3 C 0.12 0.74 4.53 -4.05 -0.02 0.72 16 4 C 0.02 0.10 0.77 -157.30 -0.12 -0.02 16 5 C -0.14 -0.90 7.12 37.16 0.26 -0.63 16 6 C -0.15 -0.63 7.20 37.15 0.27 -0.36 16 7 C 0.22 1.75 13.86 -20.76 -0.29 1.47 16 8 N -0.43 -4.62 18.54 42.15 0.78 -3.84 16 9 C 0.51 5.10 6.10 -11.65 -0.07 5.03 16 10 O -0.51 -5.71 14.38 5.49 0.08 -5.64 16 11 C 0.50 6.05 7.43 -11.65 -0.09 5.96 16 12 O -0.50 -7.04 11.40 5.46 0.06 -6.98 16 13 N -0.63 -7.78 5.30 -10.27 -0.05 -7.84 16 14 C 0.03 0.51 6.14 -83.69 -0.51 0.00 16 15 C -0.06 -1.02 8.65 -39.40 -0.34 -1.36 16 16 C -0.21 -4.28 9.16 -39.42 -0.36 -4.64 16 17 C 0.16 3.40 6.66 -39.07 -0.26 3.14 16 18 O -0.21 -5.30 8.58 0.09 0.00 -5.30 16 19 C -0.39 -10.57 9.94 30.88 0.31 -10.26 16 20 H 0.11 2.97 5.42 -52.49 -0.28 2.69 16 21 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 22 N -0.87 -24.52 13.96 55.48 0.77 -23.75 16 23 Si 0.91 20.89 28.62 -169.99 -4.86 16.03 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.18 -3.21 9.98 -39.42 -0.39 -3.61 16 28 C -0.08 -1.27 9.96 -39.39 -0.39 -1.67 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.28 6.35 -51.93 -0.33 -0.05 16 31 H 0.11 0.93 5.55 -51.93 -0.29 0.64 16 32 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.10 0.68 7.40 -51.93 -0.38 0.30 16 34 H 0.07 0.52 6.16 -51.93 -0.32 0.20 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.57 7.76 -51.93 -0.40 0.17 16 37 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.36 6.09 -51.93 -0.32 0.04 16 40 H 0.41 4.20 8.34 -40.82 -0.34 3.86 16 41 H 0.12 1.99 6.94 -52.49 -0.36 1.63 16 42 H 0.14 3.01 5.61 -52.49 -0.29 2.72 16 43 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 45 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -31.03 376.21 -5.02 -36.05 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.41 Total: 4.09 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.62 Total: -3.71 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 1.06 Total: -40.20 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.14 Total: -17.92 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.86 Total: 16.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.03 -5.02 -36.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117754344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds