Wall clock time and date at job start Wed Apr 1 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00145 * 2 1 4 4 C 1.52997 * 109.47121 * 270.00273 * 3 2 1 5 5 C 1.52998 * 109.47265 * 299.99834 * 4 3 2 6 6 C 1.52994 * 109.47297 * 59.99842 * 4 3 2 7 7 C 1.47206 * 109.46954 * 179.97438 * 4 3 2 8 8 N 4.80459 * 118.48571 * 340.02755 * 2 1 3 9 9 C 1.34781 * 119.99861 * 180.02562 * 2 1 3 10 10 O 1.21360 * 119.99742 * 181.30558 * 9 2 1 11 11 C 1.49314 * 119.99931 * 1.30344 * 9 2 1 12 12 O 1.21391 * 120.00485 * 354.55014 * 11 9 2 13 13 N 1.34773 * 120.00107 * 174.54342 * 11 9 2 14 14 C 1.39742 * 120.00252 * 173.28286 * 13 11 9 15 15 C 1.38992 * 120.00891 * 320.23264 * 14 13 11 16 16 C 1.37967 * 119.99348 * 180.02562 * 15 14 13 17 17 C 1.38935 * 120.00629 * 0.02562 * 16 15 14 18 18 O 1.35761 * 119.99277 * 179.97438 * 17 16 15 19 19 C 1.34802 * 117.00084 * 0.99510 * 18 17 16 20 20 H 1.07994 * 119.99768 * 355.37231 * 19 18 17 21 21 C 1.38647 * 119.99915 * 175.36228 * 19 18 17 22 22 N 1.31561 * 119.99965 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00300 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46888 * 89.99506 * 23 21 19 25 25 H 1.48499 * 109.47273 * 209.99614 * 23 21 19 26 26 H 1.48497 * 109.47091 * 329.99916 * 23 21 19 27 27 C 1.38930 * 120.01747 * 0.25499 * 17 16 15 28 28 C 1.37978 * 120.00623 * 359.48769 * 27 17 16 29 29 H 1.09006 * 109.47340 * 263.36809 * 1 2 3 30 30 H 1.09002 * 109.47100 * 23.36677 * 1 2 3 31 31 H 1.09002 * 109.47532 * 143.36628 * 1 2 3 32 32 H 1.09007 * 109.47203 * 30.00072 * 3 2 1 33 33 H 1.08994 * 109.47381 * 149.99976 * 3 2 1 34 34 H 1.09003 * 109.46977 * 59.99577 * 5 4 3 35 35 H 1.08999 * 109.47353 * 180.02562 * 5 4 3 36 36 H 1.09006 * 109.46921 * 300.00693 * 5 4 3 37 37 H 1.09007 * 109.47029 * 60.00199 * 6 4 3 38 38 H 1.08999 * 109.47451 * 179.97438 * 6 4 3 39 39 H 1.08997 * 109.47573 * 300.00077 * 6 4 3 40 40 H 0.97005 * 120.00134 * 353.29624 * 13 11 9 41 41 H 1.08000 * 120.00547 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.99861 * 179.97438 * 16 15 14 43 43 H 0.97003 * 120.00070 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.00350 * 179.72480 * 27 17 16 45 45 H 1.07993 * 120.00605 * 180.23669 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2793 0.6441 -2.1638 6 6 1.1156 1.8933 -2.1637 7 6 3.1880 2.9855 -1.4424 8 7 3.7565 3.9689 -1.4424 9 6 2.1389 -1.1673 -0.0005 10 8 3.3522 -1.1674 0.0234 11 6 1.3926 -2.4601 -0.0305 12 8 0.1810 -2.4636 0.0454 13 7 2.0640 -3.6234 -0.1421 14 6 1.3816 -4.8377 -0.0293 15 6 0.3749 -4.9840 0.9178 16 6 -0.2982 -6.1831 1.0292 17 6 0.0304 -7.2445 0.1951 18 8 -0.6318 -8.4245 0.3053 19 6 -1.6105 -8.4931 1.2298 20 1 -1.7869 -7.6586 1.8922 21 6 -2.3907 -9.6348 1.3300 22 7 -3.3462 -9.7015 2.2319 23 14 -2.0853 -11.0783 0.1844 24 1 -1.0976 -11.9996 0.8016 25 1 -3.3601 -11.8034 -0.0490 26 1 -1.5554 -10.5795 -1.1100 27 6 1.0405 -7.1005 -0.7478 28 6 1.7105 -5.8999 -0.8633 29 1 -0.3634 -0.1187 1.0208 30 1 -0.3633 0.9434 -0.4076 31 1 -0.3634 -0.8247 -0.6132 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 2.7343 -0.2999 -2.1637 35 1 3.4613 0.9590 -3.1913 36 1 4.2317 0.5137 -1.6499 37 1 0.5266 2.6530 -1.6498 38 1 1.2972 2.2084 -3.1912 39 1 0.5706 0.9494 -2.1637 40 1 3.0210 -3.6178 -0.3004 41 1 0.1202 -4.1594 1.5671 42 1 -1.0802 -6.2971 1.7654 43 1 -3.8919 -10.5004 2.3022 44 1 1.2988 -7.9271 -1.3931 45 1 2.4931 -5.7867 -1.5989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117754344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:37 Heat of formation + Delta-G solvation = -38.917477 kcal Electronic energy + Delta-G solvation = -29353.667965 eV Core-core repulsion = 25144.611980 eV Total energy + Delta-G solvation = -4209.055984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.25936 -41.04094 -40.16314 -38.82792 -38.31239 -37.05620 -35.55745 -34.69758 -34.33305 -31.91611 -30.11113 -29.09672 -28.51678 -27.55737 -27.00472 -25.22303 -24.06770 -23.41947 -22.22304 -20.97938 -19.90745 -19.27359 -18.78825 -18.39603 -18.31589 -17.51685 -17.06915 -16.69976 -16.28633 -15.97430 -15.75574 -15.65207 -15.60281 -15.38481 -15.12656 -14.58473 -14.45864 -14.39010 -14.21255 -14.14249 -14.05418 -13.86023 -13.77488 -13.54852 -13.30780 -13.18037 -12.81465 -12.71085 -12.68000 -12.56704 -12.53200 -12.35256 -12.08782 -11.97360 -11.90822 -11.41997 -11.12662 -10.71709 -10.42203 -9.88205 -9.83979 -8.73776 -8.47344 -6.19389 0.10169 0.51597 0.70650 1.16989 1.35750 1.39836 1.55547 1.67031 1.69084 2.09861 2.30818 2.37933 2.76868 2.85697 3.06704 3.14453 3.27487 3.65147 3.71843 3.92669 4.03917 4.09813 4.33325 4.39825 4.45783 4.55464 4.59645 4.66295 4.70941 4.77200 4.83199 4.88833 4.92774 4.99939 5.12723 5.16966 5.23285 5.27380 5.32475 5.34630 5.47732 5.57524 5.76403 5.85489 5.91163 6.13953 6.25318 6.45914 6.68274 6.86452 6.95298 7.58787 8.63869 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.001967 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.896887 B =14234.927179 C =14631.171166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.571 5.571 3 C 0.123 3.877 4 C 0.025 3.975 5 C -0.136 4.136 6 C -0.147 4.147 7 C 0.245 3.755 8 N -0.477 5.477 9 C 0.516 3.484 10 O -0.525 6.525 11 C 0.498 3.502 12 O -0.517 6.517 13 N -0.625 5.625 14 C 0.064 3.936 15 C -0.067 4.067 16 C -0.221 4.221 17 C 0.118 3.882 18 O -0.238 6.238 19 C -0.399 4.399 20 H 0.081 0.919 21 C 0.009 3.991 22 N -0.922 5.922 23 Si 0.972 3.028 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.259 1.259 27 C -0.169 4.169 28 C -0.071 4.071 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.429 0.571 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.284 0.716 44 H 0.144 0.856 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 21.192 -9.370 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.303 5.303 3 C -0.001 4.001 4 C 0.020 3.980 5 C -0.194 4.194 6 C -0.205 4.205 7 C -0.073 4.073 8 N -0.152 5.152 9 C 0.298 3.702 10 O -0.402 6.402 11 C 0.281 3.719 12 O -0.393 6.393 13 N -0.273 5.273 14 C -0.029 4.029 15 C -0.087 4.087 16 C -0.241 4.241 17 C 0.069 3.931 18 O -0.146 6.146 19 C -0.475 4.475 20 H 0.098 0.902 21 C -0.190 4.190 22 N -0.563 5.563 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.196 1.196 26 H -0.183 1.183 27 C -0.188 4.188 28 C -0.090 4.090 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.268 0.732 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.161 0.839 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.675 22.423 -9.294 26.934 hybrid contribution -0.257 -0.958 0.316 1.041 sum 11.418 21.464 -8.978 25.917 Atomic orbital electron populations 1.22610 0.76079 1.05548 1.03908 1.47560 1.08889 1.04153 1.69708 1.21713 0.99519 0.84825 0.94040 1.18767 0.95675 0.84849 0.98691 1.21892 0.99882 0.97047 1.00621 1.22090 0.93002 1.04473 1.00954 1.29127 0.92387 0.93817 0.91992 1.81279 1.10943 1.13463 1.09554 1.19709 0.87123 0.84948 0.78381 1.90788 1.13363 1.87170 1.48897 1.20446 0.87611 0.85707 0.78173 1.90779 1.14174 1.86895 1.47433 1.42845 1.12786 1.02499 1.69151 1.17313 0.99484 0.86642 0.99489 1.20689 0.95537 0.95846 0.96644 1.21089 1.04722 0.94308 1.03944 1.19716 0.92973 0.85221 0.95217 1.83512 1.45724 1.30663 1.54656 1.20693 1.10429 1.04532 1.11839 0.90157 1.25309 0.94070 1.00925 0.98652 1.69738 1.20423 1.30905 1.35231 0.85192 0.78135 0.77793 0.79472 1.19050 1.19571 1.18255 1.20382 0.97768 0.99934 1.00743 1.20883 1.00198 0.90489 0.97472 0.92009 0.87629 0.89089 0.86058 0.89083 0.91283 0.90926 0.91907 0.89905 0.90959 0.89424 0.73167 0.86098 0.87116 0.90597 0.83862 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 8.12 127.77 1.04 1.66 16 2 N -0.57 -6.83 2.40 -848.51 -2.04 -8.87 16 3 C 0.12 1.07 4.53 86.38 0.39 1.46 16 4 C 0.02 0.22 0.77 -53.99 -0.04 0.18 16 5 C -0.14 -1.44 7.12 71.98 0.51 -0.93 16 6 C -0.15 -0.74 7.20 71.98 0.52 -0.22 16 7 C 0.24 3.41 13.86 89.44 1.24 4.65 16 8 N -0.48 -9.68 18.54 20.01 0.37 -9.31 16 9 C 0.52 8.95 6.10 87.23 0.53 9.48 16 10 O -0.53 -10.30 14.38 -3.28 -0.05 -10.34 16 11 C 0.50 10.91 7.43 87.23 0.65 11.56 16 12 O -0.52 -13.70 11.40 -3.37 -0.04 -13.74 16 13 N -0.62 -13.52 5.30 -304.75 -1.61 -15.14 16 14 C 0.06 1.82 6.14 38.24 0.23 2.05 16 15 C -0.07 -2.37 8.65 22.39 0.19 -2.18 16 16 C -0.22 -9.51 9.16 22.37 0.20 -9.30 16 17 C 0.12 5.23 6.66 22.60 0.15 5.38 16 18 O -0.24 -12.40 8.58 -22.58 -0.19 -12.59 16 19 C -0.40 -22.91 9.94 67.92 0.68 -22.24 16 20 H 0.08 4.87 5.42 -2.91 -0.02 4.86 16 21 C 0.01 0.51 5.49 84.83 0.47 0.97 16 22 N -0.92 -54.32 13.96 21.61 0.30 -54.02 16 23 Si 0.97 44.13 28.62 68.60 1.96 46.10 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 C -0.17 -5.73 9.98 22.37 0.22 -5.51 16 28 C -0.07 -1.88 9.96 22.39 0.22 -1.66 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.40 6.35 -2.39 -0.02 0.39 16 31 H 0.09 1.35 5.55 -2.39 -0.01 1.34 16 32 H 0.12 0.48 8.07 -2.38 -0.02 0.46 16 33 H 0.09 1.02 7.40 -2.39 -0.02 1.00 16 34 H 0.07 0.80 6.16 -2.39 -0.01 0.79 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.84 7.76 -2.38 -0.02 0.82 16 37 H 0.08 0.21 8.07 -2.38 -0.02 0.19 16 38 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.09 0.42 6.09 -2.39 -0.01 0.40 16 40 H 0.43 7.04 8.34 -92.70 -0.77 6.27 16 41 H 0.12 4.12 6.94 -2.91 -0.02 4.10 16 42 H 0.11 5.32 5.61 -2.91 -0.02 5.30 16 43 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 45 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -72.00 376.21 6.20 -65.80 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.29 Total: 16.75 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 7.21 Total: -4.64 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.98 Total: -87.34 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.28 Total: -36.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.96 Total: 46.10 kcal Total: -72.00 6.20 -65.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117754344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.881 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds