Wall clock time and date at job start Wed Apr 1 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47465 * 305.00017 * 4 3 2 6 6 C 1.50707 * 109.47009 * 184.99986 * 4 3 2 7 7 O 1.21288 * 119.99750 * 330.00316 * 6 4 3 8 8 N 1.34769 * 120.00128 * 150.00246 * 6 4 3 9 9 C 1.47385 * 135.85256 * 359.63163 * 8 6 4 10 10 C 1.52078 * 87.41163 * 154.38846 * 9 8 6 11 11 C 1.47394 * 135.85352 * 179.97438 * 8 6 4 12 12 C 1.53511 * 117.21257 * 267.28153 * 10 9 8 13 13 C 1.54638 * 102.70106 * 262.92841 * 12 10 9 14 14 N 1.47148 * 107.37594 * 339.38069 * 13 12 10 15 15 C 1.36941 * 125.57732 * 179.03955 * 14 13 12 16 16 H 1.07997 * 119.99612 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99772 * 0.03336 * 15 14 13 18 18 N 1.31610 * 120.00235 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47118 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47634 * 119.99707 * 19 17 15 22 22 H 1.48504 * 109.47193 * 240.00050 * 19 17 15 23 23 C 1.47751 * 108.83902 * 359.09396 * 14 13 12 24 24 S 1.81399 * 109.47139 * 65.00189 * 4 3 2 25 25 N 1.65605 * 104.45146 * 59.99709 * 24 4 3 26 26 O 1.42105 * 110.54401 * 171.61786 * 24 4 3 27 27 O 1.42095 * 110.54205 * 308.37299 * 24 4 3 28 28 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 32 32 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 33 33 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 34 34 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 35 35 H 1.09001 * 113.54390 * 268.99641 * 9 8 6 36 36 H 1.08999 * 113.54735 * 39.68223 * 9 8 6 37 37 H 1.09001 * 113.54421 * 320.32827 * 11 8 6 38 38 H 1.09000 * 113.54420 * 90.92886 * 11 8 6 39 39 H 1.08999 * 110.76382 * 21.22959 * 12 10 9 40 40 H 1.09001 * 110.76628 * 144.62324 * 12 10 9 41 41 H 1.08998 * 109.86382 * 98.83367 * 13 12 10 42 42 H 1.09007 * 109.86127 * 219.93571 * 13 12 10 43 43 H 0.97001 * 120.00027 * 180.02562 * 18 17 15 44 44 H 1.09007 * 110.40269 * 263.49803 * 23 14 13 45 45 H 1.09002 * 110.40397 * 141.07915 * 23 14 13 46 46 H 0.97001 * 119.99804 * 359.97438 * 25 24 4 47 47 H 0.97000 * 119.99950 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8533 0.8426 6 6 4.0721 2.8581 0.1245 7 8 3.4168 3.7754 -0.3228 8 7 5.2495 3.1046 0.7322 9 6 6.2930 2.2938 1.3848 10 6 7.2737 3.4042 1.0412 11 6 6.0509 4.3030 1.0389 12 6 8.0458 3.2750 -0.2793 13 6 9.3927 2.6644 0.1727 14 7 9.5404 2.9416 1.6103 15 6 10.5932 2.5492 2.3933 16 1 10.6092 2.8025 3.4430 17 6 11.6397 1.8261 1.8376 18 7 11.6200 1.5172 0.5584 19 14 13.0761 1.2915 2.9055 20 1 12.8597 1.7612 4.2976 21 1 13.1781 -0.1899 2.8927 22 1 14.3327 1.8788 2.3752 23 6 8.3664 3.7114 2.0709 24 16 4.1752 0.7196 -1.5490 25 7 3.5574 1.7005 -2.7317 26 8 5.5826 0.8822 -1.6588 27 8 3.5627 -0.5408 -1.7839 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6764 1.9564 0.8900 35 1 6.1383 2.1656 2.4562 36 1 6.4991 1.3545 0.8716 37 1 6.0548 5.0412 0.2369 38 1 5.8275 4.7387 2.0127 39 1 7.5284 2.6045 -0.9654 40 1 8.1985 4.2534 -0.7349 41 1 9.3873 1.5880 0.0016 42 1 10.2120 3.1250 -0.3794 43 1 12.3511 1.0116 0.1702 44 1 8.5911 4.7781 2.0798 45 1 8.0589 3.3787 3.0623 46 1 3.0059 2.4615 -2.4916 47 1 3.7464 1.5136 -3.6646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147987134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:40 Heat of formation + Delta-G solvation = -41.073577 kcal Electronic energy + Delta-G solvation = -30047.881584 eV Core-core repulsion = 25974.176055 eV Total energy + Delta-G solvation = -4073.705529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.88410 -38.88568 -37.50033 -36.18708 -35.82710 -35.58995 -33.31046 -32.31297 -31.33530 -29.49397 -28.66165 -26.26047 -26.04310 -24.75160 -23.49540 -21.74739 -20.35189 -20.10670 -19.50452 -18.47369 -18.25658 -17.68689 -16.91679 -16.62684 -16.44427 -16.08153 -15.73959 -15.35120 -14.81353 -14.55847 -14.38005 -14.16691 -13.84250 -13.75899 -13.27884 -13.03711 -12.74720 -12.47448 -12.39719 -12.33917 -12.32022 -12.24143 -11.91747 -11.82138 -11.80368 -11.33931 -11.25290 -11.02085 -10.91927 -10.70609 -10.59827 -10.57599 -10.41297 -10.22352 -10.06776 -9.90472 -9.75496 -9.62126 -8.75589 -8.58216 -6.82435 -5.69386 -3.03770 -0.17042 2.26207 2.39362 2.73959 3.29724 3.40408 3.45579 3.48418 3.64976 3.91269 4.43186 4.49281 4.52301 4.60270 4.71869 4.82188 4.92515 5.12372 5.14887 5.27045 5.36395 5.47195 5.49833 5.50967 5.58675 5.63226 5.68830 5.76461 5.81748 5.83454 5.84674 5.89420 6.11131 6.12057 6.29192 6.47634 6.62418 6.69516 6.74918 6.87119 7.53523 7.58745 7.69245 7.79050 7.87632 8.27038 9.22814 9.82844 10.48520 11.41759 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.003026 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.011587 B = 9249.896815 C = 9670.739483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.170 4.170 3 C -0.085 4.085 4 C -0.612 4.612 5 H 0.160 0.840 6 C 0.559 3.441 7 O -0.533 6.533 8 N -0.629 5.629 9 C 0.108 3.892 10 C -0.102 4.102 11 C 0.120 3.880 12 C -0.123 4.123 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.154 3.846 24 S 2.625 3.375 25 N -1.246 6.246 26 O -0.934 6.934 27 O -0.948 6.948 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.418 0.582 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.231 0.486 -2.582 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.123 4.123 4 C -0.722 4.722 5 H 0.178 0.822 6 C 0.345 3.655 7 O -0.411 6.411 8 N -0.363 5.363 9 C -0.014 4.014 10 C -0.104 4.104 11 C -0.002 4.002 12 C -0.161 4.161 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.027 3.973 24 S 2.712 3.288 25 N -0.922 5.922 26 O -0.923 6.923 27 O -0.937 6.937 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.246 0.754 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.929 -0.092 -2.904 21.130 hybrid contribution 0.325 0.323 0.855 0.970 sum -20.604 0.231 -2.049 20.707 Atomic orbital electron populations 1.21686 0.94861 1.02054 1.01850 1.22266 0.97454 0.95365 1.05660 1.21285 0.86525 0.99039 1.05484 1.30593 1.09275 1.06682 1.25622 0.82215 1.18533 0.79268 0.88109 0.79579 1.90718 1.55458 1.45095 1.49799 1.49764 1.18419 1.13512 1.54557 1.23148 0.82810 0.97504 0.97964 1.22159 0.93205 0.94682 1.00345 1.22893 0.86386 0.89575 1.01298 1.22569 0.98164 1.01273 0.94122 1.21237 0.90598 0.98777 0.83941 1.44568 1.19558 1.63140 1.05893 1.19065 0.96204 1.28707 0.91775 0.90410 1.24808 0.98706 1.00688 0.96201 1.69981 1.32569 1.43631 1.10373 0.86067 0.82482 0.78064 0.79243 1.20572 1.21799 1.21815 1.21125 0.86591 0.95370 0.94173 1.04716 0.74621 0.74152 0.75343 1.53016 1.70856 1.46572 1.21790 1.93701 1.29134 1.85519 1.83960 1.93550 1.77298 1.39983 1.82821 0.92825 0.92480 0.92221 0.87440 0.91222 0.89829 0.89465 0.88960 0.89268 0.89950 0.89282 0.90431 0.91972 0.93264 0.93839 0.93764 0.95522 0.94019 0.75376 0.74881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.17 -1.43 5.65 -26.73 -0.15 -1.58 16 3 C -0.08 -0.73 4.14 -26.73 -0.11 -0.85 16 4 C -0.61 -6.30 2.63 -27.88 -0.07 -6.38 16 5 H 0.16 1.32 7.92 -51.93 -0.41 0.91 16 6 C 0.56 7.30 6.85 -10.99 -0.08 7.22 16 7 O -0.53 -7.81 16.44 5.55 0.09 -7.72 16 8 N -0.63 -8.57 3.70 -185.73 -0.69 -9.26 16 9 C 0.11 1.53 7.61 -7.33 -0.06 1.48 16 10 C -0.10 -1.65 1.06 -155.23 -0.16 -1.81 16 11 C 0.12 1.61 8.02 -7.49 -0.06 1.55 16 12 C -0.12 -2.31 6.40 -25.61 -0.16 -2.48 16 13 C 0.18 4.30 5.39 -2.83 -0.02 4.29 16 14 N -0.60 -14.80 3.41 -170.53 -0.58 -15.38 16 15 C -0.23 -6.19 10.28 -15.06 -0.15 -6.34 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.21 5.49 -17.44 -0.10 -0.30 16 18 N -0.92 -26.78 10.30 55.49 0.57 -26.21 16 19 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.15 2.90 6.70 -3.22 -0.02 2.88 16 24 S 2.62 30.59 5.46 -107.50 -0.59 30.00 16 25 N -1.25 -11.37 9.13 60.35 0.55 -10.82 16 26 O -0.93 -14.63 17.88 -57.54 -1.03 -15.66 16 27 O -0.95 -12.25 14.89 -57.54 -0.86 -13.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 1.05 4.90 -51.93 -0.25 0.79 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.66 6.96 -51.93 -0.36 0.30 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.48 7.95 -51.93 -0.41 1.07 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.33 7.38 -51.93 -0.38 0.94 16 42 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 45 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 46 H 0.42 3.43 7.18 -34.47 -0.25 3.18 16 47 H 0.42 3.10 8.96 -34.47 -0.31 2.79 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -34.64 384.57 -9.90 -44.54 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.38 Total: 4.04 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.77 Total: -3.00 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.15 Total: -61.67 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.79 Total: -36.49 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 30.59 SS G_CDS: -0.59 Total: 30.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.64 -9.90 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147987134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.467 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds