Wall clock time and date at job start Wed Apr 1 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47465 * 305.00017 * 4 3 2 6 6 C 1.50707 * 109.47009 * 184.99986 * 4 3 2 7 7 O 1.21288 * 119.99750 * 330.00316 * 6 4 3 8 8 N 1.34769 * 120.00128 * 150.00246 * 6 4 3 9 9 C 1.47385 * 135.85256 * 359.63163 * 8 6 4 10 10 C 1.52078 * 87.41163 * 154.38846 * 9 8 6 11 11 C 1.47394 * 135.85352 * 179.97438 * 8 6 4 12 12 C 1.53511 * 117.21257 * 267.28153 * 10 9 8 13 13 C 1.54638 * 102.70106 * 262.92841 * 12 10 9 14 14 N 1.47148 * 107.37594 * 339.38069 * 13 12 10 15 15 C 1.36941 * 125.57732 * 179.03955 * 14 13 12 16 16 H 1.07997 * 119.99612 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99772 * 0.03336 * 15 14 13 18 18 N 1.31610 * 120.00235 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47118 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47634 * 119.99707 * 19 17 15 22 22 H 1.48504 * 109.47193 * 240.00050 * 19 17 15 23 23 C 1.47751 * 108.83902 * 359.09396 * 14 13 12 24 24 S 1.81399 * 109.47139 * 65.00189 * 4 3 2 25 25 N 1.65605 * 104.45146 * 59.99709 * 24 4 3 26 26 O 1.42105 * 110.54401 * 171.61786 * 24 4 3 27 27 O 1.42095 * 110.54205 * 308.37299 * 24 4 3 28 28 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 30 30 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 32 32 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 33 33 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 34 34 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 35 35 H 1.09001 * 113.54390 * 268.99641 * 9 8 6 36 36 H 1.08999 * 113.54735 * 39.68223 * 9 8 6 37 37 H 1.09001 * 113.54421 * 320.32827 * 11 8 6 38 38 H 1.09000 * 113.54420 * 90.92886 * 11 8 6 39 39 H 1.08999 * 110.76382 * 21.22959 * 12 10 9 40 40 H 1.09001 * 110.76628 * 144.62324 * 12 10 9 41 41 H 1.08998 * 109.86382 * 98.83367 * 13 12 10 42 42 H 1.09007 * 109.86127 * 219.93571 * 13 12 10 43 43 H 0.97001 * 120.00027 * 180.02562 * 18 17 15 44 44 H 1.09007 * 110.40269 * 263.49803 * 23 14 13 45 45 H 1.09002 * 110.40397 * 141.07915 * 23 14 13 46 46 H 0.97001 * 119.99804 * 359.97438 * 25 24 4 47 47 H 0.97000 * 119.99950 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8533 0.8426 6 6 4.0721 2.8581 0.1245 7 8 3.4168 3.7754 -0.3228 8 7 5.2495 3.1046 0.7322 9 6 6.2930 2.2938 1.3848 10 6 7.2737 3.4042 1.0412 11 6 6.0509 4.3030 1.0389 12 6 8.0458 3.2750 -0.2793 13 6 9.3927 2.6644 0.1727 14 7 9.5404 2.9416 1.6103 15 6 10.5932 2.5492 2.3933 16 1 10.6092 2.8025 3.4430 17 6 11.6397 1.8261 1.8376 18 7 11.6200 1.5172 0.5584 19 14 13.0761 1.2915 2.9055 20 1 12.8597 1.7612 4.2976 21 1 13.1781 -0.1899 2.8927 22 1 14.3327 1.8788 2.3752 23 6 8.3664 3.7114 2.0709 24 16 4.1752 0.7196 -1.5490 25 7 3.5574 1.7005 -2.7317 26 8 5.5826 0.8822 -1.6588 27 8 3.5627 -0.5408 -1.7839 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6764 1.9564 0.8900 35 1 6.1383 2.1656 2.4562 36 1 6.4991 1.3545 0.8716 37 1 6.0548 5.0412 0.2369 38 1 5.8275 4.7387 2.0127 39 1 7.5284 2.6045 -0.9654 40 1 8.1985 4.2534 -0.7349 41 1 9.3873 1.5880 0.0016 42 1 10.2120 3.1250 -0.3794 43 1 12.3511 1.0116 0.1702 44 1 8.5911 4.7781 2.0798 45 1 8.0589 3.3787 3.0623 46 1 3.0059 2.4615 -2.4916 47 1 3.7464 1.5136 -3.6646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147987134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:39 Heat of formation + Delta-G solvation = -67.772995 kcal Electronic energy + Delta-G solvation = -30049.039358 eV Core-core repulsion = 25974.176055 eV Total energy + Delta-G solvation = -4074.863302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05001 -40.02977 -38.48908 -37.37602 -37.21350 -36.43832 -34.15242 -34.07172 -32.29188 -31.06475 -30.13576 -27.59900 -27.23966 -26.01755 -24.91301 -22.42076 -22.12380 -21.21177 -20.49498 -19.73085 -19.18578 -18.66953 -18.57365 -17.83512 -17.45114 -16.98522 -16.81988 -16.59281 -16.38033 -15.93059 -15.61961 -15.36364 -14.95651 -14.80844 -14.33892 -14.14021 -13.83793 -13.74112 -13.66537 -13.46733 -13.36223 -13.33071 -13.26108 -13.15190 -12.84826 -12.78725 -12.52282 -12.27377 -12.03265 -11.97655 -11.94901 -11.88946 -11.79414 -11.66818 -11.39767 -11.27396 -11.20634 -10.97251 -10.66221 -9.84320 -8.83372 -7.78684 -5.14167 -1.09733 1.26925 1.43102 1.49575 1.50118 1.60290 1.81247 2.39679 2.53635 2.70485 3.08544 3.29202 3.44135 3.57980 3.61367 3.75867 3.82337 4.02901 4.06117 4.16971 4.24828 4.30655 4.52647 4.53689 4.60952 4.68176 4.69023 4.71851 4.84082 4.86500 4.93879 4.96544 5.11303 5.12840 5.20788 5.23114 5.23592 5.33613 5.49277 5.53394 5.72023 5.83519 6.20123 6.24529 6.47604 6.75463 7.15024 7.83410 8.48118 9.31850 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.003026 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.011587 B = 9249.896815 C = 9670.739483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.172 4.172 3 C -0.083 4.083 4 C -0.600 4.600 5 H 0.182 0.818 6 C 0.558 3.442 7 O -0.547 6.547 8 N -0.632 5.632 9 C 0.109 3.891 10 C -0.103 4.103 11 C 0.130 3.870 12 C -0.109 4.109 13 C 0.190 3.810 14 N -0.626 5.626 15 C -0.232 4.232 16 H 0.090 0.910 17 C -0.072 4.072 18 N -0.954 5.954 19 Si 0.976 3.024 20 H -0.261 1.261 21 H -0.296 1.296 22 H -0.297 1.297 23 C 0.153 3.847 24 S 2.631 3.369 25 N -1.236 6.236 26 O -0.981 6.981 27 O -0.964 6.964 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.007 0.993 42 H 0.003 0.997 43 H 0.243 0.757 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.424 0.576 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.575 1.525 -0.624 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.210 4.210 3 C -0.122 4.122 4 C -0.712 4.712 5 H 0.199 0.801 6 C 0.345 3.655 7 O -0.426 6.426 8 N -0.365 5.365 9 C -0.013 4.013 10 C -0.104 4.104 11 C 0.008 3.992 12 C -0.147 4.147 13 C 0.065 3.935 14 N -0.352 5.352 15 C -0.361 4.361 16 H 0.108 0.892 17 C -0.264 4.264 18 N -0.603 5.603 19 Si 0.805 3.195 20 H -0.185 1.185 21 H -0.224 1.224 22 H -0.225 1.225 23 C 0.027 3.973 24 S 2.720 3.280 25 N -0.916 5.916 26 O -0.970 6.970 27 O -0.953 6.953 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.026 0.974 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.254 0.746 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -23.306 0.967 -0.946 23.345 hybrid contribution 0.993 0.048 0.246 1.024 sum -22.313 1.015 -0.700 22.347 Atomic orbital electron populations 1.21712 0.93842 1.02533 1.02535 1.22269 0.98419 0.95009 1.05292 1.21375 0.84989 0.99465 1.06383 1.30530 1.10496 1.05161 1.24976 0.80094 1.18806 0.78920 0.88836 0.78928 1.90717 1.55811 1.45843 1.50195 1.49734 1.18542 1.13448 1.54773 1.23197 0.82266 0.96271 0.99571 1.22000 0.93536 0.97503 0.97378 1.22909 0.84063 0.89013 1.03200 1.22317 0.95574 1.01119 0.95691 1.20881 0.92209 0.96230 0.84170 1.44850 1.20845 1.63617 1.05891 1.19519 0.96662 1.27392 0.92525 0.89239 1.25656 1.01631 1.01760 0.97370 1.70223 1.33035 1.44905 1.12173 0.85037 0.78946 0.76990 0.78522 1.18505 1.22363 1.22496 1.21326 0.85204 0.95073 0.95662 1.04241 0.73666 0.74142 0.75914 1.52778 1.70539 1.46446 1.21879 1.93661 1.32109 1.86223 1.84972 1.93544 1.77167 1.41213 1.83342 0.91932 0.92048 0.91919 0.88925 0.90524 0.89069 0.88456 0.85993 0.90670 0.89597 0.86108 0.91038 0.90779 0.97427 0.97911 0.94720 0.94367 0.92017 0.74588 0.73926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.17 -2.53 5.65 30.60 0.17 -2.36 16 3 C -0.08 -1.23 4.14 30.60 0.13 -1.10 16 4 C -0.60 -11.08 2.63 29.85 0.08 -11.00 16 5 H 0.18 2.54 7.92 -2.39 -0.02 2.52 16 6 C 0.56 13.12 6.85 87.66 0.60 13.72 16 7 O -0.55 -14.51 16.44 -3.06 -0.05 -14.56 16 8 N -0.63 -15.43 3.70 -859.91 -3.18 -18.60 16 9 C 0.11 2.85 7.61 83.77 0.64 3.48 16 10 C -0.10 -3.11 1.06 -52.63 -0.06 -3.17 16 11 C 0.13 3.01 8.02 83.66 0.67 3.68 16 12 C -0.11 -4.11 6.40 31.32 0.20 -3.91 16 13 C 0.19 9.55 5.39 86.81 0.47 10.02 16 14 N -0.63 -30.73 3.41 -693.43 -2.36 -33.09 16 15 C -0.23 -12.52 10.28 84.03 0.86 -11.66 16 16 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 17 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 18 N -0.95 -58.20 10.30 21.65 0.22 -57.97 16 19 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 C 0.15 5.41 6.70 86.23 0.58 5.99 16 24 S 2.63 59.81 5.46 -56.49 -0.31 59.51 16 25 N -1.24 -21.44 9.13 37.02 0.34 -21.10 16 26 O -0.98 -31.24 17.88 -127.65 -2.28 -33.52 16 27 O -0.96 -24.57 14.89 -127.65 -1.90 -26.47 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.69 4.90 -2.39 -0.01 1.67 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.21 6.96 -2.39 -0.02 1.19 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 2.49 8.06 -2.39 -0.02 2.47 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 1.98 8.13 -2.39 -0.02 1.96 16 38 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 2.80 7.95 -2.39 -0.02 2.78 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 42 H 0.00 0.15 7.49 -2.38 -0.02 0.13 16 43 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 46 H 0.42 6.32 7.18 -96.74 -0.69 5.62 16 47 H 0.43 6.06 8.96 -96.74 -0.87 5.20 16 Total: -1.00 -77.21 384.57 -2.54 -79.75 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.57 Total: 19.51 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.52 Total: -0.97 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -4.98 Total: -130.77 kcal Atomic # 8 Polarization: -70.32 SS G_CDS: -4.23 Total: -74.55 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 59.81 SS G_CDS: -0.31 Total: 59.51 kcal Total: -77.21 -2.54 -79.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147987134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.979 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds