Wall clock time and date at job start Wed Apr 1 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 N 1.46497 * 109.47209 * 239.99594 * 2 1 3 5 5 S 1.65599 * 119.99766 * 65.29891 * 4 2 1 6 6 C 1.81400 * 104.45126 * 72.24307 * 5 4 2 7 7 O 1.42105 * 104.27790 * 188.31331 * 5 4 2 8 8 O 1.42096 * 104.27777 * 316.16892 * 5 4 2 9 9 C 1.50701 * 109.46772 * 119.99969 * 2 1 3 10 10 O 1.21290 * 119.99652 * 264.99971 * 9 2 1 11 11 N 1.34773 * 120.00219 * 85.00352 * 9 2 1 12 12 C 1.47895 * 134.34024 * 180.02562 * 11 9 2 13 13 C 1.52372 * 85.58956 * 156.52880 * 12 11 9 14 14 C 1.47882 * 134.34323 * 0.02562 * 11 9 2 15 15 C 1.53651 * 116.39902 * 141.34671 * 13 12 11 16 16 C 1.54600 * 102.73260 * 162.91531 * 15 13 12 17 17 N 1.47132 * 107.36762 * 339.24869 * 16 15 13 18 18 C 1.36935 * 125.58893 * 179.07392 * 17 16 15 19 19 H 1.08004 * 120.00417 * 179.97438 * 18 17 16 20 20 C 1.38808 * 119.99984 * 359.97438 * 18 17 16 21 21 N 1.31620 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47077 * 89.99995 * 22 20 18 24 24 H 1.48501 * 109.47384 * 209.99673 * 22 20 18 25 25 H 1.48494 * 109.47324 * 329.99870 * 22 20 18 26 26 C 1.47719 * 108.82553 * 359.07305 * 17 16 15 27 27 H 1.09006 * 109.47051 * 291.12016 * 1 2 3 28 28 H 1.08995 * 109.46888 * 51.12121 * 1 2 3 29 29 H 1.08998 * 109.47028 * 171.12128 * 1 2 3 30 30 H 1.09005 * 109.46754 * 191.46466 * 3 2 1 31 31 H 1.08999 * 109.46807 * 311.46503 * 3 2 1 32 32 H 1.08997 * 109.47260 * 71.46203 * 3 2 1 33 33 H 0.96996 * 120.00131 * 245.30167 * 4 2 1 34 34 H 1.09005 * 109.46964 * 50.84594 * 6 5 4 35 35 H 1.08996 * 109.47335 * 170.85104 * 6 5 4 36 36 H 1.08998 * 109.46678 * 290.84754 * 6 5 4 37 37 H 1.08997 * 113.85069 * 42.36364 * 12 11 9 38 38 H 1.08994 * 113.96838 * 270.70881 * 12 11 9 39 39 H 1.09005 * 113.85363 * 89.30162 * 14 11 9 40 40 H 1.09004 * 113.85223 * 317.63766 * 14 11 9 41 41 H 1.09004 * 110.75949 * 281.23064 * 15 13 12 42 42 H 1.09000 * 110.75824 * 44.60581 * 15 13 12 43 43 H 1.09003 * 109.86592 * 98.69470 * 16 15 13 44 44 H 1.08997 * 109.86743 * 219.65999 * 16 15 13 45 45 H 0.97011 * 119.99972 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.40529 * 263.66202 * 26 17 16 47 47 H 1.08996 * 110.40327 * 141.25104 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 1.7294 -0.0526 -2.6966 6 6 2.8231 1.3914 -2.7928 7 8 2.1595 -1.0647 -3.5966 8 8 0.3689 0.3547 -2.6481 9 6 2.0323 -0.7104 1.2305 10 8 2.3207 -0.0748 2.2224 11 7 2.1611 -2.0520 1.2288 12 6 2.6081 -3.0488 2.2257 13 6 1.7788 -4.0463 1.4263 14 6 1.9116 -3.1130 0.2293 15 6 2.3730 -5.4540 1.2642 16 6 1.1487 -6.2929 0.8313 17 7 -0.0564 -5.5567 1.2444 18 6 -1.3480 -5.9567 1.0279 19 1 -2.1680 -5.3437 1.3717 20 6 -1.6033 -7.1502 0.3666 21 7 -0.6039 -7.8970 -0.0528 22 14 -3.3652 -7.6963 0.0719 23 1 -3.8379 -7.1614 -1.2304 24 1 -3.4264 -9.1798 0.0492 25 1 -4.2319 -7.1817 1.1623 26 6 0.3554 -4.3153 1.9311 27 1 -0.3633 0.3703 0.9587 28 1 -0.3633 0.6450 -0.8000 29 1 -0.3633 -1.0153 -0.1586 30 1 3.1108 1.4493 -0.2043 31 1 1.5196 2.0118 -0.7701 32 1 1.8532 1.8940 0.9743 33 1 2.5110 -1.5217 -1.1091 34 1 3.8367 1.0983 -2.5193 35 1 2.8199 1.7825 -3.8102 36 1 2.4697 2.1611 -2.1067 37 1 2.2295 -2.8667 3.2314 38 1 3.6794 -3.2480 2.2030 39 1 2.7701 -3.3306 -0.4063 40 1 0.9863 -2.9813 -0.3317 41 1 3.1405 -5.4625 0.4901 42 1 2.7738 -5.8155 2.2111 43 1 1.1515 -6.4211 -0.2512 44 1 1.1758 -7.2670 1.3195 45 1 -0.7824 -8.7309 -0.5153 46 1 0.3567 -4.4610 3.0113 47 1 -0.3061 -3.4930 1.6586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148401909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:19 Heat of formation + Delta-G solvation = -22.122779 kcal Electronic energy + Delta-G solvation = -30494.570954 eV Core-core repulsion = 26421.687193 eV Total energy + Delta-G solvation = -4072.883760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95842 -39.01094 -37.42807 -36.43733 -36.07224 -35.68016 -32.26062 -30.93347 -30.20607 -29.69188 -28.48390 -27.24250 -26.35682 -25.98611 -24.06489 -22.52595 -20.32409 -19.68709 -19.50505 -18.55001 -17.75053 -17.43536 -16.80798 -16.59499 -16.01837 -15.73586 -15.48514 -14.88629 -14.79518 -14.43806 -14.20015 -13.93526 -13.74919 -13.69330 -13.32436 -13.21174 -12.95836 -12.65257 -12.48226 -12.36024 -12.28698 -12.11011 -11.90617 -11.87650 -11.86994 -11.72729 -11.43951 -11.25832 -11.12806 -10.94157 -10.77857 -10.45440 -10.26004 -10.10273 -9.97226 -9.86515 -9.68510 -9.51278 -8.68261 -8.60893 -6.86019 -5.72712 -3.06373 -0.00609 2.23059 2.61220 2.74236 3.41029 3.46428 3.47687 3.58485 3.88359 4.04953 4.36973 4.43721 4.48001 4.56274 4.63098 4.71736 4.86153 4.93761 5.10158 5.11392 5.33117 5.36389 5.45601 5.48622 5.55185 5.66056 5.66688 5.69337 5.71177 5.79579 5.80157 5.96117 6.08115 6.17421 6.29116 6.42890 6.45724 6.59405 6.62533 6.68370 7.53811 7.57654 7.65379 7.80885 8.03237 8.23337 9.20469 9.80169 10.44930 11.38842 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.003664 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.218020 B = 7641.068042 C = 8608.190125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.172 3.828 3 C -0.178 4.178 4 N -1.113 6.113 5 S 2.610 3.390 6 C -0.686 4.686 7 O -0.953 6.953 8 O -0.946 6.946 9 C 0.545 3.455 10 O -0.540 6.540 11 N -0.634 5.634 12 C 0.122 3.878 13 C -0.103 4.103 14 C 0.110 3.890 15 C -0.132 4.132 16 C 0.178 3.822 17 N -0.604 5.604 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.162 3.838 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.419 0.581 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.044 0.956 45 H 0.252 0.748 46 H 0.025 0.975 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.710 18.054 -2.464 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.081 3.919 3 C -0.236 4.236 4 N -0.875 5.875 5 S 2.702 3.298 6 C -0.836 4.836 7 O -0.944 6.944 8 O -0.936 6.936 9 C 0.332 3.668 10 O -0.417 6.417 11 N -0.369 5.369 12 C 0.000 4.000 13 C -0.105 4.105 14 C -0.012 4.012 15 C -0.171 4.171 16 C 0.053 3.947 17 N -0.331 5.331 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.036 3.964 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.256 0.744 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.027 18.248 -2.682 20.993 hybrid contribution -0.064 -0.337 0.054 0.347 sum 9.963 17.911 -2.629 20.664 Atomic orbital electron populations 1.22593 0.90805 1.05405 1.04583 1.20307 0.96567 0.92144 0.82901 1.22645 1.01871 0.93510 1.05603 1.55980 1.72671 1.36717 1.22180 1.04936 0.75963 0.76293 0.72647 1.30992 1.18232 1.22535 1.11801 1.93647 1.83863 1.54707 1.62147 1.93602 1.30576 1.84124 1.85286 1.19926 0.77403 0.80582 0.88893 1.90707 1.51086 1.64983 1.34924 1.50214 1.64506 1.03896 1.18246 1.23053 0.99087 0.83369 0.94496 1.22472 0.98708 0.94406 0.94884 1.23212 1.01959 0.82795 0.93280 1.22689 0.99653 0.93709 1.01014 1.21214 0.81599 0.92877 0.98992 1.44542 1.02436 1.19534 1.66558 1.19033 0.81924 1.03341 1.31448 0.90484 1.24774 0.97533 0.97288 1.00611 1.69953 1.28711 1.14432 1.43767 0.86135 0.83958 0.77683 0.78073 1.21546 1.21689 1.20722 1.21035 0.89928 0.90322 0.95108 0.91046 0.87795 0.90732 0.90881 0.90909 0.88365 0.74372 0.85207 0.85443 0.84506 0.89826 0.89532 0.89338 0.88716 0.91666 0.91623 0.93382 0.93789 0.93742 0.95722 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 7.99 37.16 0.30 -1.78 16 2 C 0.17 1.89 0.98 -132.97 -0.13 1.76 16 3 C -0.18 -1.47 6.61 37.16 0.25 -1.23 16 4 N -1.11 -11.11 4.95 -0.40 0.00 -11.12 16 5 S 2.61 25.18 5.76 -107.50 -0.62 24.56 16 6 C -0.69 -3.63 9.56 101.05 0.97 -2.67 16 7 O -0.95 -12.72 18.08 -57.54 -1.04 -13.76 16 8 O -0.95 -11.62 14.76 -57.54 -0.85 -12.47 16 9 C 0.54 7.42 6.88 -10.99 -0.08 7.35 16 10 O -0.54 -8.77 16.58 5.55 0.09 -8.68 16 11 N -0.63 -8.45 3.51 -186.90 -0.66 -9.11 16 12 C 0.12 1.58 8.21 -3.60 -0.03 1.55 16 13 C -0.10 -1.58 0.99 -154.85 -0.15 -1.73 16 14 C 0.11 1.49 5.58 -3.61 -0.02 1.47 16 15 C -0.13 -2.14 6.36 -25.55 -0.16 -2.30 16 16 C 0.18 4.02 5.39 -2.86 -0.02 4.01 16 17 N -0.60 -14.66 3.41 -170.51 -0.58 -15.24 16 18 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.41 10.30 55.49 0.57 -25.84 16 22 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.16 3.16 6.63 -3.16 -0.02 3.14 16 27 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 28 H 0.10 1.19 5.67 -51.93 -0.29 0.89 16 29 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 31 H 0.07 0.44 5.84 -51.93 -0.30 0.14 16 32 H 0.10 0.89 7.43 -51.93 -0.39 0.50 16 33 H 0.42 4.12 5.49 -34.47 -0.19 3.93 16 34 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.14 0.57 5.08 -51.92 -0.26 0.30 16 37 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.00 7.52 -51.93 -0.39 0.61 16 40 H 0.09 1.43 8.02 -51.93 -0.42 1.01 16 41 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 44 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.04 0.79 8.07 -51.93 -0.42 0.38 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -35.38 373.80 -8.98 -44.37 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.16 Total: 1.80 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 0.65 Total: 2.92 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.67 Total: -61.31 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.80 Total: -34.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 25.18 SS G_CDS: -0.62 Total: 24.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.38 -8.98 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148401909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.244 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds