Wall clock time and date at job start Wed Apr 1 2020 03:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 N 1.46497 * 109.47209 * 239.99594 * 2 1 3 5 5 S 1.65599 * 119.99766 * 65.29891 * 4 2 1 6 6 C 1.81400 * 104.45126 * 72.24307 * 5 4 2 7 7 O 1.42105 * 104.27790 * 188.31331 * 5 4 2 8 8 O 1.42096 * 104.27777 * 316.16892 * 5 4 2 9 9 C 1.50701 * 109.46772 * 119.99969 * 2 1 3 10 10 O 1.21290 * 119.99652 * 264.99971 * 9 2 1 11 11 N 1.34773 * 120.00219 * 85.00352 * 9 2 1 12 12 C 1.47895 * 134.34024 * 180.02562 * 11 9 2 13 13 C 1.52372 * 85.58956 * 156.52880 * 12 11 9 14 14 C 1.47882 * 134.34323 * 0.02562 * 11 9 2 15 15 C 1.53651 * 116.39902 * 141.34671 * 13 12 11 16 16 C 1.54600 * 102.73260 * 162.91531 * 15 13 12 17 17 N 1.47132 * 107.36762 * 339.24869 * 16 15 13 18 18 C 1.36935 * 125.58893 * 179.07392 * 17 16 15 19 19 H 1.08004 * 120.00417 * 179.97438 * 18 17 16 20 20 C 1.38808 * 119.99984 * 359.97438 * 18 17 16 21 21 N 1.31620 * 119.99949 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47077 * 89.99995 * 22 20 18 24 24 H 1.48501 * 109.47384 * 209.99673 * 22 20 18 25 25 H 1.48494 * 109.47324 * 329.99870 * 22 20 18 26 26 C 1.47719 * 108.82553 * 359.07305 * 17 16 15 27 27 H 1.09006 * 109.47051 * 291.12016 * 1 2 3 28 28 H 1.08995 * 109.46888 * 51.12121 * 1 2 3 29 29 H 1.08998 * 109.47028 * 171.12128 * 1 2 3 30 30 H 1.09005 * 109.46754 * 191.46466 * 3 2 1 31 31 H 1.08999 * 109.46807 * 311.46503 * 3 2 1 32 32 H 1.08997 * 109.47260 * 71.46203 * 3 2 1 33 33 H 0.96996 * 120.00131 * 245.30167 * 4 2 1 34 34 H 1.09005 * 109.46964 * 50.84594 * 6 5 4 35 35 H 1.08996 * 109.47335 * 170.85104 * 6 5 4 36 36 H 1.08998 * 109.46678 * 290.84754 * 6 5 4 37 37 H 1.08997 * 113.85069 * 42.36364 * 12 11 9 38 38 H 1.08994 * 113.96838 * 270.70881 * 12 11 9 39 39 H 1.09005 * 113.85363 * 89.30162 * 14 11 9 40 40 H 1.09004 * 113.85223 * 317.63766 * 14 11 9 41 41 H 1.09004 * 110.75949 * 281.23064 * 15 13 12 42 42 H 1.09000 * 110.75824 * 44.60581 * 15 13 12 43 43 H 1.09003 * 109.86592 * 98.69470 * 16 15 13 44 44 H 1.08997 * 109.86743 * 219.65999 * 16 15 13 45 45 H 0.97011 * 119.99972 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.40529 * 263.66202 * 26 17 16 47 47 H 1.08996 * 110.40327 * 141.25104 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 1.7294 -0.0526 -2.6966 6 6 2.8231 1.3914 -2.7928 7 8 2.1595 -1.0647 -3.5966 8 8 0.3689 0.3547 -2.6481 9 6 2.0323 -0.7104 1.2305 10 8 2.3207 -0.0748 2.2224 11 7 2.1611 -2.0520 1.2288 12 6 2.6081 -3.0488 2.2257 13 6 1.7788 -4.0463 1.4263 14 6 1.9116 -3.1130 0.2293 15 6 2.3730 -5.4540 1.2642 16 6 1.1487 -6.2929 0.8313 17 7 -0.0564 -5.5567 1.2444 18 6 -1.3480 -5.9567 1.0279 19 1 -2.1680 -5.3437 1.3717 20 6 -1.6033 -7.1502 0.3666 21 7 -0.6039 -7.8970 -0.0528 22 14 -3.3652 -7.6963 0.0719 23 1 -3.8379 -7.1614 -1.2304 24 1 -3.4264 -9.1798 0.0492 25 1 -4.2319 -7.1817 1.1623 26 6 0.3554 -4.3153 1.9311 27 1 -0.3633 0.3703 0.9587 28 1 -0.3633 0.6450 -0.8000 29 1 -0.3633 -1.0153 -0.1586 30 1 3.1108 1.4493 -0.2043 31 1 1.5196 2.0118 -0.7701 32 1 1.8532 1.8940 0.9743 33 1 2.5110 -1.5217 -1.1091 34 1 3.8367 1.0983 -2.5193 35 1 2.8199 1.7825 -3.8102 36 1 2.4697 2.1611 -2.1067 37 1 2.2295 -2.8667 3.2314 38 1 3.6794 -3.2480 2.2030 39 1 2.7701 -3.3306 -0.4063 40 1 0.9863 -2.9813 -0.3317 41 1 3.1405 -5.4625 0.4901 42 1 2.7738 -5.8155 2.2111 43 1 1.1515 -6.4211 -0.2512 44 1 1.1758 -7.2670 1.3195 45 1 -0.7824 -8.7309 -0.5153 46 1 0.3567 -4.4610 3.0113 47 1 -0.3061 -3.4930 1.6586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148401909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:18 Heat of formation + Delta-G solvation = -50.049254 kcal Electronic energy + Delta-G solvation = -30495.781937 eV Core-core repulsion = 26421.687193 eV Total energy + Delta-G solvation = -4074.094743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08864 -40.16553 -38.32479 -37.34918 -37.28079 -36.92869 -34.11101 -31.70403 -31.45050 -30.69875 -29.89715 -28.03147 -27.63843 -27.43066 -25.69367 -23.60268 -22.09564 -20.61259 -20.38874 -19.78106 -18.82914 -18.70882 -18.22140 -17.38532 -17.07851 -16.76697 -16.61721 -16.54488 -15.92661 -15.82063 -15.54234 -15.07498 -14.58221 -14.47358 -14.26878 -14.16642 -13.98028 -13.92130 -13.67133 -13.62515 -13.43147 -13.23594 -13.16769 -12.95473 -12.85708 -12.79849 -12.60386 -12.55422 -12.45420 -12.33199 -12.03380 -11.96183 -11.93817 -11.69176 -11.66850 -11.30501 -10.71144 -10.69768 -10.63109 -9.77979 -8.87571 -7.84303 -5.18743 -0.70341 1.32557 1.45576 1.46822 1.54968 1.62578 1.80545 2.49014 2.88855 3.08969 3.20597 3.30261 3.42565 3.58370 3.63400 3.75106 3.87427 3.93799 4.10095 4.11840 4.18005 4.21104 4.37111 4.49947 4.56069 4.62077 4.64420 4.72852 4.74295 4.81122 4.84751 4.88944 4.96100 4.98594 5.07356 5.12559 5.21670 5.26180 5.33111 5.46362 5.73015 5.81772 5.83091 6.22112 6.57393 6.97415 7.12947 7.79122 8.42208 9.25282 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.003664 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.218020 B = 7641.068042 C = 8608.190125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.177 3.823 3 C -0.181 4.181 4 N -1.114 6.114 5 S 2.606 3.394 6 C -0.659 4.659 7 O -0.997 6.997 8 O -0.982 6.982 9 C 0.543 3.457 10 O -0.566 6.566 11 N -0.634 5.634 12 C 0.132 3.868 13 C -0.099 4.099 14 C 0.114 3.886 15 C -0.112 4.112 16 C 0.183 3.817 17 N -0.625 5.625 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.971 3.029 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.272 1.272 26 C 0.159 3.841 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.419 0.581 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.014 0.986 44 H 0.006 0.994 45 H 0.246 0.754 46 H 0.026 0.974 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 20.516 -2.548 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.085 3.915 3 C -0.239 4.239 4 N -0.875 5.875 5 S 2.703 3.297 6 C -0.813 4.813 7 O -0.988 6.988 8 O -0.973 6.973 9 C 0.331 3.669 10 O -0.445 6.445 11 N -0.368 5.368 12 C 0.010 3.990 13 C -0.101 4.101 14 C -0.008 4.008 15 C -0.151 4.151 16 C 0.058 3.942 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.800 3.200 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.197 1.197 26 C 0.034 3.966 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.256 0.744 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.032 0.968 44 H 0.024 0.976 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.132 20.693 -2.745 24.144 hybrid contribution -0.752 -1.046 0.106 1.293 sum 11.380 19.647 -2.640 22.858 Atomic orbital electron populations 1.22590 0.92118 1.03932 1.04739 1.20287 0.95516 0.93637 0.82068 1.22741 1.03583 0.91403 1.06159 1.55858 1.72692 1.37162 1.21831 1.04819 0.75954 0.77135 0.71790 1.30745 1.17490 1.19061 1.14020 1.93591 1.84355 1.57640 1.63220 1.93551 1.33639 1.84627 1.85436 1.20335 0.76783 0.80414 0.89324 1.90694 1.52338 1.65421 1.36064 1.50209 1.64349 1.04058 1.18213 1.23104 1.00426 0.81620 0.93823 1.22310 0.96205 0.94850 0.96741 1.23241 1.02460 0.82196 0.92915 1.22533 0.97251 0.92534 1.02735 1.21008 0.84010 0.92651 0.96541 1.44821 1.02122 1.21370 1.66815 1.19365 0.83573 1.03359 1.30862 0.90670 1.25527 1.01076 0.97632 1.01077 1.70164 1.30267 1.14466 1.44589 0.85187 0.79991 0.76863 0.77951 1.21497 1.21888 1.19685 1.21137 0.92588 0.88101 0.94742 0.91050 0.87283 0.93202 0.88605 0.88603 0.89083 0.74396 0.82750 0.83231 0.82556 0.90083 0.86042 0.86102 0.90835 0.88571 0.89831 0.96817 0.97606 0.94419 0.95623 0.95182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 7.99 71.98 0.57 -3.58 16 2 C 0.18 3.59 0.98 2.86 0.00 3.60 16 3 C -0.18 -2.44 6.61 71.98 0.48 -1.96 16 4 N -1.11 -20.53 4.95 -155.18 -0.77 -21.30 16 5 S 2.61 46.46 5.76 -56.49 -0.33 46.14 16 6 C -0.66 -4.04 9.56 113.37 1.08 -2.96 16 7 O -1.00 -26.13 18.08 -127.65 -2.31 -28.44 16 8 O -0.98 -23.67 14.76 -127.65 -1.88 -25.55 16 9 C 0.54 13.90 6.88 87.66 0.60 14.51 16 10 O -0.57 -17.42 16.58 -3.06 -0.05 -17.47 16 11 N -0.63 -15.73 3.51 -863.62 -3.03 -18.76 16 12 C 0.13 3.04 8.21 85.90 0.71 3.75 16 13 C -0.10 -2.91 0.99 -52.16 -0.05 -2.96 16 14 C 0.11 2.94 5.58 85.90 0.48 3.42 16 15 C -0.11 -3.45 6.36 31.36 0.20 -3.25 16 16 C 0.18 8.51 5.39 86.80 0.47 8.98 16 17 N -0.62 -31.30 3.41 -693.37 -2.36 -33.66 16 18 C -0.24 -13.64 10.28 84.03 0.86 -12.77 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 21 N -0.95 -56.39 10.30 21.65 0.22 -56.17 16 22 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.16 6.28 6.63 86.28 0.57 6.85 16 27 H 0.07 1.64 8.12 -2.38 -0.02 1.62 16 28 H 0.11 2.47 5.67 -2.39 -0.01 2.46 16 29 H 0.05 1.40 8.11 -2.39 -0.02 1.38 16 30 H 0.10 0.87 7.47 -2.38 -0.02 0.85 16 31 H 0.10 0.82 5.84 -2.39 -0.01 0.81 16 32 H 0.09 1.43 7.43 -2.39 -0.02 1.41 16 33 H 0.42 7.57 5.49 -96.75 -0.53 7.04 16 34 H 0.15 0.36 8.14 -2.39 -0.02 0.35 16 35 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.16 0.47 5.08 -2.39 -0.01 0.46 16 37 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 38 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 2.38 7.52 -2.38 -0.02 2.36 16 40 H 0.07 2.25 8.02 -2.39 -0.02 2.23 16 41 H 0.10 2.41 7.99 -2.38 -0.02 2.39 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 44 H 0.01 0.30 7.49 -2.39 -0.02 0.29 16 45 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 Total: -1.00 -81.48 373.80 -1.58 -83.06 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.45 Total: 13.10 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.44 Total: 10.69 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -5.94 Total: -129.88 kcal Atomic # 8 Polarization: -67.21 SS G_CDS: -4.24 Total: -71.46 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 46.46 SS G_CDS: -0.33 Total: 46.14 kcal Total: -81.48 -1.58 -83.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148401909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.011 kcal (2) G-P(sol) polarization free energy of solvation -81.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds