Wall clock time and date at job start Wed Apr 1 2020 03:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09002 * 109.47229 * 304.90787 * 3 2 1 5 5 C 1.50695 * 109.47508 * 184.89937 * 3 2 1 6 6 H 1.08002 * 120.00258 * 245.45867 * 5 3 2 7 7 C 1.37877 * 119.99784 * 65.45195 * 5 3 2 8 8 N 1.31515 * 120.00168 * 9.47238 * 7 5 3 9 9 Si 1.86802 * 120.00225 * 189.47181 * 7 5 3 10 10 H 1.48492 * 109.47189 * 84.99322 * 9 7 5 11 11 H 1.48493 * 109.47199 * 204.99915 * 9 7 5 12 12 H 1.48507 * 109.46907 * 324.99609 * 9 7 5 13 13 N 1.46503 * 109.46644 * 64.89983 * 3 2 1 14 14 C 1.34774 * 120.00543 * 274.99824 * 13 3 2 15 15 O 1.21630 * 119.99255 * 0.02562 * 14 13 3 16 16 C 1.47314 * 120.00417 * 180.02562 * 14 13 3 17 17 C 1.36576 * 126.21093 * 180.02562 * 16 14 13 18 18 N 1.34875 * 106.78607 * 179.97438 * 17 16 14 19 19 C 1.36305 * 107.86067 * 0.06843 * 18 17 16 20 20 N 1.29789 * 108.92554 * 359.91356 * 19 18 17 21 21 C 1.51101 * 123.89957 * 179.90833 * 19 18 17 22 22 C 1.53393 * 108.19719 * 344.05936 * 21 19 18 23 23 C 1.53137 * 109.24911 * 48.94291 * 22 21 19 24 24 H 1.08997 * 109.46276 * 50.22718 * 23 22 21 25 25 C 1.53006 * 109.45703 * 170.18422 * 23 22 21 26 26 F 1.39897 * 109.46803 * 60.00914 * 25 23 22 27 27 F 1.39898 * 109.46928 * 180.02562 * 25 23 22 28 28 F 1.39895 * 109.47276 * 300.00010 * 25 23 22 29 29 C 1.46573 * 127.49905 * 180.14671 * 18 17 16 30 30 H 1.08993 * 109.47518 * 299.99898 * 1 2 3 31 31 H 1.09008 * 109.47215 * 59.99690 * 1 2 3 32 32 H 1.08995 * 109.46860 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47460 * 240.00545 * 2 1 3 34 34 H 1.08997 * 109.47348 * 119.99841 * 2 1 3 35 35 H 0.96994 * 120.00033 * 179.97438 * 8 7 5 36 36 H 0.97004 * 120.00016 * 95.00252 * 13 3 2 37 37 H 1.08001 * 126.60589 * 359.92869 * 17 16 14 38 38 H 1.08997 * 109.72036 * 224.38507 * 21 19 18 39 39 H 1.09009 * 109.75513 * 103.75236 * 21 19 18 40 40 H 1.09007 * 109.50370 * 289.01604 * 22 21 19 41 41 H 1.08995 * 109.54867 * 168.90072 * 22 21 19 42 42 H 1.09002 * 109.58849 * 42.95775 * 29 18 17 43 43 H 1.09004 * 109.58203 * 282.54593 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6066 1.9812 -0.8428 5 6 3.5420 1.4444 -0.1213 6 1 4.1493 1.8091 0.6939 7 6 4.1411 0.9803 -1.2731 8 7 3.4097 0.7117 -2.3326 9 14 5.9919 0.7330 -1.3290 10 1 6.3290 -0.6064 -0.7836 11 1 6.4618 0.8278 -2.7344 12 1 6.6561 1.7811 -0.5132 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6651 1.3638 15 8 -0.3425 2.6321 0.4272 16 6 0.0412 3.3249 2.6214 17 6 -1.1538 3.9361 2.8737 18 7 -1.0930 4.4036 4.1374 19 6 0.1297 4.0789 4.6449 20 7 0.8034 3.4358 3.7410 21 6 0.5833 4.4328 6.0421 22 6 -0.3564 5.5137 6.5914 23 6 -1.8084 5.0819 6.3670 24 1 -1.9457 4.0649 6.7343 25 6 -2.7439 6.0273 7.1234 26 9 -2.5676 7.3329 6.6527 27 9 -4.0705 5.6327 6.9191 28 9 -2.4492 5.9803 8.4901 29 6 -2.1324 5.1322 4.8702 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8312 0.3855 -3.1430 36 1 2.2686 2.1243 1.9979 37 1 -1.9866 4.0282 2.1923 38 1 1.6041 4.8137 6.0120 39 1 0.5392 3.5491 6.6787 40 1 -0.1720 6.4543 6.0722 41 1 -0.1765 5.6454 7.6583 42 1 -3.1013 4.6663 4.6901 43 1 -2.1559 6.1695 4.5361 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153960002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:20 Heat of formation + Delta-G solvation = -144.030911 kcal Electronic energy + Delta-G solvation = -30420.581464 eV Core-core repulsion = 25665.110679 eV Total energy + Delta-G solvation = -4755.470785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.74856 -48.21847 -48.20298 -42.49826 -38.71321 -37.28545 -34.89434 -33.76974 -32.22817 -31.41443 -30.63616 -28.90605 -27.14390 -26.25232 -24.49967 -23.35632 -22.46248 -22.27928 -20.08865 -19.80265 -19.22272 -18.94629 -18.78745 -18.12968 -17.59062 -16.53631 -16.17039 -15.42514 -15.27599 -15.22367 -15.17280 -14.74928 -14.62588 -14.56441 -14.37861 -14.32145 -14.28798 -14.10992 -13.98464 -13.84293 -13.27351 -12.88503 -12.61259 -12.48775 -12.05902 -11.87364 -11.86090 -11.71318 -11.37819 -11.26360 -10.94475 -10.70825 -10.29081 -10.21795 -10.10488 -9.81980 -9.61349 -9.06208 -9.01179 -8.42871 -8.39467 -7.67689 -6.06737 -4.10935 1.72784 1.87517 2.41967 2.54993 3.08333 3.13234 3.28542 3.31269 3.37442 3.39781 3.82884 3.85712 3.98652 4.20244 4.22111 4.33435 4.39877 4.52149 4.60721 4.66641 4.77150 4.89159 5.14563 5.26320 5.36164 5.41992 5.45246 5.77102 5.97335 6.42415 6.48235 6.53412 6.68350 6.87882 7.08756 7.25089 7.41395 7.53005 7.69635 7.78499 7.86708 7.99469 8.17013 8.84791 8.89725 9.27674 9.54945 11.01684 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.002242 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.837472 B =12486.396761 C =13169.536909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.690 5.690 14 C 0.585 3.415 15 O -0.554 6.554 16 C -0.041 4.041 17 C 0.027 3.973 18 N -0.458 5.458 19 C 0.195 3.805 20 N -0.446 5.446 21 C -0.025 4.025 22 C -0.125 4.125 23 C -0.151 4.151 24 H 0.130 0.870 25 C 0.464 3.536 26 F -0.177 7.177 27 F -0.179 7.179 28 F -0.175 7.175 29 C 0.110 3.890 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.396 0.604 37 H 0.189 0.811 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 11.002 22.328 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.336 5.336 14 C 0.369 3.631 15 O -0.433 6.433 16 C -0.171 4.171 17 C -0.109 4.109 18 N -0.142 5.142 19 C -0.068 4.068 20 N -0.166 5.166 21 C -0.064 4.064 22 C -0.163 4.163 23 C -0.171 4.171 24 H 0.148 0.852 25 C 0.409 3.591 26 F -0.159 7.159 27 F -0.161 7.161 28 F -0.157 7.157 29 C -0.013 4.013 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.206 0.794 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.451 10.653 21.551 27.073 hybrid contribution 0.168 0.290 0.285 0.440 sum -12.283 10.943 21.835 27.339 Atomic orbital electron populations 1.21840 0.98080 0.98064 1.01532 1.21848 0.92976 0.99884 1.01148 1.18825 0.94375 0.88914 0.81295 0.92557 1.21203 0.90638 1.43608 1.01746 0.92014 1.24878 0.98389 0.95247 0.94986 1.69988 1.35667 1.44079 1.02119 0.86537 0.85163 0.78721 0.77143 1.20454 1.21256 1.19891 1.46310 1.14282 1.54500 1.18518 1.16849 0.83061 0.78699 0.84463 1.90765 1.52225 1.61379 1.38974 1.21168 0.92756 1.07708 0.95429 1.22426 1.01478 1.01099 0.85939 1.45010 1.13830 1.43442 1.11936 1.23466 0.82987 1.02294 0.98024 1.70437 1.30083 1.16330 0.99737 1.20128 1.00203 0.98868 0.87213 1.21809 0.90102 1.00312 1.04050 1.22790 0.96945 1.01551 0.95772 0.85187 1.20152 0.80136 0.80518 0.78258 1.93214 1.95166 1.39371 1.88141 1.93224 1.37539 1.90582 1.94716 1.93212 1.93072 1.96383 1.33000 1.21850 0.91649 0.99079 0.88768 0.94000 0.92941 0.95868 0.90237 0.94684 0.92649 0.77069 0.79367 0.87418 0.88577 0.89411 0.88395 0.87535 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.12 -2.97 5.50 -26.73 -0.15 -3.11 16 3 C 0.27 7.01 2.11 -69.08 -0.15 6.86 16 4 H 0.06 1.70 7.52 -51.93 -0.39 1.30 16 5 C -0.53 -14.62 8.66 -34.44 -0.30 -14.92 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.89 5.16 -17.82 -0.09 1.80 16 8 N -0.88 -25.41 12.16 55.43 0.67 -24.74 16 9 Si 0.90 21.12 29.55 -169.99 -5.02 16.09 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.69 -15.71 5.02 -56.04 -0.28 -15.99 16 14 C 0.59 12.68 6.37 -12.57 -0.08 12.60 16 15 O -0.55 -13.28 14.01 5.25 0.07 -13.21 16 16 C -0.04 -0.73 6.98 -82.98 -0.58 -1.31 16 17 C 0.03 0.37 11.32 -16.81 -0.19 0.18 16 18 N -0.46 -4.81 3.11 -113.42 -0.35 -5.16 16 19 C 0.20 2.29 7.64 -154.64 -1.18 1.11 16 20 N -0.45 -7.16 11.00 -7.01 -0.08 -7.24 16 21 C -0.03 -0.17 6.33 -27.48 -0.17 -0.35 16 22 C -0.12 -0.58 5.00 -26.46 -0.13 -0.71 16 23 C -0.15 -0.72 2.17 -90.42 -0.20 -0.92 16 24 H 0.13 0.51 8.11 -51.93 -0.42 0.09 16 25 C 0.46 2.53 2.69 37.16 0.10 2.63 16 26 F -0.18 -1.12 16.32 2.25 0.04 -1.09 16 27 F -0.18 -1.14 16.98 2.25 0.04 -1.10 16 28 F -0.18 -1.07 16.64 2.25 0.04 -1.03 16 29 C 0.11 0.68 5.99 -3.88 -0.02 0.66 16 30 H 0.04 0.94 5.65 -51.93 -0.29 0.65 16 31 H 0.05 1.26 7.84 -51.92 -0.41 0.85 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 2.14 6.80 -51.93 -0.35 1.79 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.40 8.50 8.24 -40.82 -0.34 8.16 16 37 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.09 0.43 8.05 -51.92 -0.42 0.02 16 41 H 0.10 0.30 7.55 -51.93 -0.39 -0.09 16 42 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 43 H 0.10 0.54 7.57 -51.93 -0.39 0.15 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -33.19 362.62 -7.71 -40.90 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.48 Total: 5.41 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.82 Total: 1.69 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.04 Total: -53.14 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.11 Total: -3.21 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.19 -7.71 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153960002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.131 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds