Wall clock time and date at job start Wed Apr 1 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47396 * 2 1 4 4 H 1.09004 * 109.47095 * 305.69264 * 3 2 1 5 5 C 1.50700 * 109.47229 * 185.69201 * 3 2 1 6 6 H 1.07994 * 119.99908 * 275.00189 * 5 3 2 7 7 C 1.37882 * 119.99845 * 95.00416 * 5 3 2 8 8 N 1.31509 * 119.99994 * 184.83362 * 7 5 3 9 9 Si 1.86803 * 119.99964 * 4.83168 * 7 5 3 10 10 H 1.48495 * 109.47518 * 84.86034 * 9 7 5 11 11 H 1.48504 * 109.46890 * 204.86461 * 9 7 5 12 12 H 1.48505 * 109.47055 * 324.85688 * 9 7 5 13 13 N 1.46500 * 109.46991 * 65.69154 * 3 2 1 14 14 C 1.34780 * 120.00197 * 274.99838 * 13 3 2 15 15 O 1.21623 * 119.99535 * 0.02562 * 14 13 3 16 16 C 1.47323 * 119.99995 * 179.97438 * 14 13 3 17 17 C 1.36570 * 126.21002 * 179.97438 * 16 14 13 18 18 N 1.34871 * 106.78809 * 180.02562 * 17 16 14 19 19 C 1.36305 * 107.86102 * 359.92350 * 18 17 16 20 20 N 1.29799 * 108.92026 * 359.84279 * 19 18 17 21 21 C 1.51100 * 123.90406 * 180.14066 * 19 18 17 22 22 C 1.53391 * 108.19584 * 15.91913 * 21 19 18 23 23 C 1.53135 * 109.24957 * 311.05956 * 22 21 19 24 24 H 1.09002 * 109.46138 * 309.78856 * 23 22 21 25 25 C 1.52995 * 109.45358 * 189.81507 * 23 22 21 26 26 F 1.39901 * 109.47251 * 299.95004 * 25 23 22 27 27 F 1.39899 * 109.47206 * 59.94947 * 25 23 22 28 28 F 1.39905 * 109.47178 * 179.97438 * 25 23 22 29 29 C 1.46571 * 127.50287 * 179.86933 * 18 17 16 30 30 H 1.08994 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46924 * 300.00161 * 1 2 3 32 32 H 1.08998 * 109.47281 * 59.99495 * 1 2 3 33 33 H 1.08999 * 109.47028 * 120.00017 * 2 1 3 34 34 H 1.08997 * 109.46863 * 239.99974 * 2 1 3 35 35 H 0.96997 * 119.99898 * 180.02562 * 8 7 5 36 36 H 0.96997 * 119.99676 * 95.00639 * 13 3 2 37 37 H 1.08002 * 126.60673 * 0.02562 * 17 16 14 38 38 H 1.09002 * 109.72045 * 256.24626 * 21 19 18 39 39 H 1.09000 * 109.72101 * 135.59575 * 21 19 18 40 40 H 1.08989 * 109.51068 * 191.12420 * 22 21 19 41 41 H 1.09000 * 109.50339 * 70.98702 * 22 21 19 42 42 H 1.08998 * 109.58758 * 317.00045 * 29 18 17 43 43 H 1.09003 * 109.58648 * 77.27507 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3333 0.7330 7 6 4.1158 1.5892 -1.3856 8 7 5.4205 1.4962 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7755 3.3739 -2.9865 11 1 3.7402 1.4495 -4.1029 12 1 1.7562 1.1881 -2.7332 13 7 1.6668 2.0924 1.2588 14 6 0.4509 2.6589 1.3901 15 8 -0.3365 2.6301 0.4636 16 6 0.0754 3.3119 2.6561 17 6 -1.1157 3.9228 2.9265 18 7 -1.0387 4.3841 4.1916 19 6 0.1889 4.0533 4.6831 20 7 0.8493 3.4110 3.7687 21 6 0.6582 4.3948 6.0782 22 6 -0.5683 4.7792 6.9154 23 6 -1.4080 5.7996 6.1418 24 1 -0.7660 6.6084 5.7927 25 6 -2.4914 6.3688 7.0600 26 9 -3.3159 5.3310 7.5077 27 9 -1.8909 6.9940 8.1580 28 9 -3.2585 7.3016 6.3537 29 6 -2.0661 5.1149 4.9391 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 5.8252 1.5982 -2.3974 36 1 2.2948 2.1151 1.9977 37 1 -1.9574 4.0181 2.2564 38 1 1.3531 5.2336 6.0374 39 1 1.1505 3.5299 6.5227 40 1 -0.2423 5.2166 7.8590 41 1 -1.1670 3.8901 7.1132 42 1 -2.5215 5.8667 4.2946 43 1 -2.8304 4.4191 5.2852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153960003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:23 Heat of formation + Delta-G solvation = -143.159786 kcal Electronic energy + Delta-G solvation = -30513.181646 eV Core-core repulsion = 25757.748636 eV Total energy + Delta-G solvation = -4755.433011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.76081 -48.23088 -48.21510 -42.54131 -38.86415 -37.33234 -35.04204 -33.80112 -32.25913 -31.64991 -30.85456 -28.95465 -27.57211 -26.38118 -24.52431 -23.24780 -22.48350 -22.32170 -20.14161 -19.82983 -19.37907 -19.00521 -18.80621 -18.15259 -17.68709 -16.73389 -16.28541 -15.57072 -15.53094 -15.27864 -15.20756 -14.75685 -14.59779 -14.57869 -14.48303 -14.36968 -14.30764 -14.10487 -13.98840 -13.83185 -13.40031 -12.99499 -12.70153 -12.57592 -12.08684 -12.06976 -11.89091 -11.82970 -11.74356 -11.70730 -10.88915 -10.61713 -10.59133 -10.24597 -9.95754 -9.83989 -9.76862 -9.23325 -9.10563 -8.62729 -8.48482 -7.84008 -6.16129 -4.18808 1.67350 1.85478 2.38987 2.49368 3.06822 3.11304 3.26954 3.32005 3.39113 3.47068 3.80563 3.83586 3.95766 4.08681 4.18967 4.32010 4.37472 4.39316 4.57332 4.64005 4.73552 4.87446 5.13090 5.19264 5.34282 5.37593 5.43437 5.70272 5.92951 6.14637 6.16592 6.32136 6.48680 6.73598 6.82708 6.87229 7.06800 7.10075 7.38390 7.45996 7.65675 7.81080 8.27528 8.73258 8.86694 9.12421 9.46535 10.95792 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.002332 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.543330 B =12002.567138 C =12292.674013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.258 1.258 13 N -0.685 5.685 14 C 0.585 3.415 15 O -0.559 6.559 16 C -0.043 4.043 17 C 0.028 3.972 18 N -0.458 5.458 19 C 0.197 3.803 20 N -0.445 5.445 21 C -0.026 4.026 22 C -0.125 4.125 23 C -0.151 4.151 24 H 0.131 0.869 25 C 0.464 3.536 26 F -0.178 7.178 27 F -0.175 7.175 28 F -0.179 7.179 29 C 0.109 3.891 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.401 0.599 37 H 0.189 0.811 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.669 10.318 20.787 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.565 4.565 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.332 5.332 14 C 0.370 3.630 15 O -0.439 6.439 16 C -0.172 4.172 17 C -0.109 4.109 18 N -0.142 5.142 19 C -0.066 4.066 20 N -0.164 5.164 21 C -0.065 4.065 22 C -0.163 4.163 23 C -0.171 4.171 24 H 0.149 0.851 25 C 0.409 3.591 26 F -0.159 7.159 27 F -0.156 7.156 28 F -0.161 7.161 29 C -0.013 4.013 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.236 0.764 37 H 0.206 0.794 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.343 10.019 20.089 27.768 hybrid contribution -1.208 0.725 -0.462 1.483 sum -17.551 10.745 19.627 28.437 Atomic orbital electron populations 1.21902 0.97466 0.98746 1.02047 1.22069 0.93662 0.99443 1.01223 1.19199 0.95536 0.89116 0.82762 0.93140 1.21033 0.88716 1.51320 0.95470 0.90261 1.24934 0.94861 0.93779 0.98749 1.69885 1.09754 1.48646 1.24385 0.86914 0.81347 0.79620 0.82205 1.19913 1.21299 1.18257 1.46432 1.14109 1.54416 1.18203 1.16940 0.83011 0.78546 0.84516 1.90747 1.51536 1.61587 1.40046 1.21082 0.92657 1.08028 0.95442 1.22413 1.01347 1.01373 0.85733 1.45023 1.13993 1.43269 1.11905 1.23489 0.83011 1.02078 0.98023 1.70448 1.30093 1.16276 0.99596 1.20143 0.96571 1.03993 0.85767 1.21808 0.96755 0.98574 0.99117 1.22792 0.96410 1.02485 0.95400 0.85134 1.20148 0.82422 0.76203 0.80278 1.93212 1.74404 1.58126 1.90180 1.93215 1.83188 1.83193 1.56029 1.93226 1.77529 1.67048 1.78259 1.21850 0.89916 0.97045 0.92536 0.95183 0.93138 0.93099 0.92965 0.92085 0.92331 0.76450 0.79387 0.88469 0.87361 0.88352 0.89431 0.87554 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.53 37.16 0.32 -2.66 16 2 C -0.12 -2.82 5.59 -26.73 -0.15 -2.97 16 3 C 0.24 5.82 1.89 -69.08 -0.13 5.69 16 4 H 0.05 1.34 4.73 -51.93 -0.25 1.10 16 5 C -0.53 -14.63 9.05 -34.44 -0.31 -14.94 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.87 21.95 26.99 -169.99 -4.59 17.37 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.37 6.82 56.52 0.39 -5.98 16 13 N -0.68 -15.12 5.02 -56.04 -0.28 -15.41 16 14 C 0.59 12.22 6.41 -12.56 -0.08 12.14 16 15 O -0.56 -12.75 14.02 5.26 0.07 -12.67 16 16 C -0.04 -0.74 6.98 -82.98 -0.58 -1.31 16 17 C 0.03 0.38 11.32 -16.82 -0.19 0.18 16 18 N -0.46 -4.68 3.11 -113.42 -0.35 -5.03 16 19 C 0.20 2.27 7.64 -154.63 -1.18 1.09 16 20 N -0.44 -7.04 11.00 -7.01 -0.08 -7.12 16 21 C -0.03 -0.18 6.33 -27.49 -0.17 -0.35 16 22 C -0.12 -0.56 5.00 -26.46 -0.13 -0.69 16 23 C -0.15 -0.71 2.17 -90.43 -0.20 -0.91 16 24 H 0.13 0.52 8.11 -51.93 -0.42 0.10 16 25 C 0.46 2.48 2.69 37.15 0.10 2.58 16 26 F -0.18 -1.09 16.33 2.25 0.04 -1.05 16 27 F -0.17 -1.06 16.64 2.25 0.04 -1.02 16 28 F -0.18 -1.12 16.98 2.25 0.04 -1.09 16 29 C 0.11 0.65 5.99 -3.88 -0.02 0.63 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.05 5.63 -51.93 -0.29 0.76 16 32 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 36 H 0.40 8.51 8.30 -40.82 -0.34 8.17 16 37 H 0.19 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.29 7.55 -51.94 -0.39 -0.10 16 41 H 0.09 0.41 8.05 -51.93 -0.42 -0.01 16 42 H 0.11 0.50 8.07 -51.93 -0.42 0.08 16 43 H 0.10 0.51 7.57 -51.93 -0.39 0.11 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -33.91 361.18 -7.17 -41.08 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.44 Total: 4.75 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.83 Total: 0.70 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.06 Total: -53.50 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.11 Total: -3.16 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.59 Total: 17.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.91 -7.17 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153960003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.084 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds