Wall clock time and date at job start Wed Apr 1 2020 03:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47396 * 2 1 4 4 H 1.09004 * 109.47095 * 305.69264 * 3 2 1 5 5 C 1.50700 * 109.47229 * 185.69201 * 3 2 1 6 6 H 1.07994 * 119.99908 * 275.00189 * 5 3 2 7 7 C 1.37882 * 119.99845 * 95.00416 * 5 3 2 8 8 N 1.31509 * 119.99994 * 184.83362 * 7 5 3 9 9 Si 1.86803 * 119.99964 * 4.83168 * 7 5 3 10 10 H 1.48495 * 109.47518 * 84.86034 * 9 7 5 11 11 H 1.48504 * 109.46890 * 204.86461 * 9 7 5 12 12 H 1.48505 * 109.47055 * 324.85688 * 9 7 5 13 13 N 1.46500 * 109.46991 * 65.69154 * 3 2 1 14 14 C 1.34780 * 120.00197 * 274.99838 * 13 3 2 15 15 O 1.21623 * 119.99535 * 0.02562 * 14 13 3 16 16 C 1.47323 * 119.99995 * 179.97438 * 14 13 3 17 17 C 1.36570 * 126.21002 * 179.97438 * 16 14 13 18 18 N 1.34871 * 106.78809 * 180.02562 * 17 16 14 19 19 C 1.36305 * 107.86102 * 359.92350 * 18 17 16 20 20 N 1.29799 * 108.92026 * 359.84279 * 19 18 17 21 21 C 1.51100 * 123.90406 * 180.14066 * 19 18 17 22 22 C 1.53391 * 108.19584 * 15.91913 * 21 19 18 23 23 C 1.53135 * 109.24957 * 311.05956 * 22 21 19 24 24 H 1.09002 * 109.46138 * 309.78856 * 23 22 21 25 25 C 1.52995 * 109.45358 * 189.81507 * 23 22 21 26 26 F 1.39901 * 109.47251 * 299.95004 * 25 23 22 27 27 F 1.39899 * 109.47206 * 59.94947 * 25 23 22 28 28 F 1.39905 * 109.47178 * 179.97438 * 25 23 22 29 29 C 1.46571 * 127.50287 * 179.86933 * 18 17 16 30 30 H 1.08994 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46924 * 300.00161 * 1 2 3 32 32 H 1.08998 * 109.47281 * 59.99495 * 1 2 3 33 33 H 1.08999 * 109.47028 * 120.00017 * 2 1 3 34 34 H 1.08997 * 109.46863 * 239.99974 * 2 1 3 35 35 H 0.96997 * 119.99898 * 180.02562 * 8 7 5 36 36 H 0.96997 * 119.99676 * 95.00639 * 13 3 2 37 37 H 1.08002 * 126.60673 * 0.02562 * 17 16 14 38 38 H 1.09002 * 109.72045 * 256.24626 * 21 19 18 39 39 H 1.09000 * 109.72101 * 135.59575 * 21 19 18 40 40 H 1.08989 * 109.51068 * 191.12420 * 22 21 19 41 41 H 1.09000 * 109.50339 * 70.98702 * 22 21 19 42 42 H 1.08998 * 109.58758 * 317.00045 * 29 18 17 43 43 H 1.09003 * 109.58648 * 77.27507 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3333 0.7330 7 6 4.1158 1.5892 -1.3856 8 7 5.4205 1.4962 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7755 3.3739 -2.9865 11 1 3.7402 1.4495 -4.1029 12 1 1.7562 1.1881 -2.7332 13 7 1.6668 2.0924 1.2588 14 6 0.4509 2.6589 1.3901 15 8 -0.3365 2.6301 0.4636 16 6 0.0754 3.3119 2.6561 17 6 -1.1157 3.9228 2.9265 18 7 -1.0387 4.3841 4.1916 19 6 0.1889 4.0533 4.6831 20 7 0.8493 3.4110 3.7687 21 6 0.6582 4.3948 6.0782 22 6 -0.5683 4.7792 6.9154 23 6 -1.4080 5.7996 6.1418 24 1 -0.7660 6.6084 5.7927 25 6 -2.4914 6.3688 7.0600 26 9 -3.3159 5.3310 7.5077 27 9 -1.8909 6.9940 8.1580 28 9 -3.2585 7.3016 6.3537 29 6 -2.0661 5.1149 4.9391 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 5.8252 1.5982 -2.3974 36 1 2.2948 2.1151 1.9977 37 1 -1.9574 4.0181 2.2564 38 1 1.3531 5.2336 6.0374 39 1 1.1505 3.5299 6.5227 40 1 -0.2423 5.2166 7.8590 41 1 -1.1670 3.8901 7.1132 42 1 -2.5215 5.8667 4.2946 43 1 -2.8304 4.4191 5.2852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153960003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:22 Heat of formation + Delta-G solvation = -165.209682 kcal Electronic energy + Delta-G solvation = -30514.137801 eV Core-core repulsion = 25757.748636 eV Total energy + Delta-G solvation = -4756.389166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.18691 -48.66377 -48.64537 -43.48480 -40.47218 -38.00016 -36.87743 -34.62330 -34.32152 -33.15191 -31.83224 -29.89381 -29.40870 -27.13617 -25.22926 -24.77817 -23.89224 -22.98405 -21.66366 -21.08276 -20.49061 -19.65319 -19.30913 -19.18492 -18.59975 -18.15135 -17.31613 -17.18294 -16.72927 -16.17340 -15.96558 -15.79088 -15.69821 -15.25155 -15.14491 -15.01731 -14.97630 -14.84672 -14.77653 -14.75869 -14.73476 -14.55535 -13.93860 -13.76555 -13.72489 -13.63612 -13.00429 -12.91311 -12.55004 -12.51369 -12.37171 -12.33846 -12.15678 -11.85592 -11.69367 -11.33024 -11.18118 -10.87807 -10.80205 -10.78133 -9.75535 -9.42363 -8.37956 -6.44047 0.58043 1.27037 1.30665 1.33545 1.39457 1.45815 1.78268 2.28393 2.54379 2.62311 2.65956 2.67518 2.87684 3.03246 3.17939 3.42648 3.55097 3.67316 3.85098 4.04244 4.09684 4.15972 4.25298 4.32714 4.42808 4.44016 4.50388 4.57701 4.79786 4.82818 4.89991 4.98673 5.03313 5.11091 5.26046 5.28826 5.40810 5.43089 5.57556 5.79627 5.97380 6.16009 6.60175 6.74604 7.03529 7.21523 7.48845 8.77554 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.002332 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.543330 B =12002.567138 C =12292.674013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.033 0.967 5 C -0.528 4.528 6 H 0.050 0.950 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.251 1.251 13 N -0.693 5.693 14 C 0.586 3.414 15 O -0.584 6.584 16 C -0.090 4.090 17 C 0.050 3.950 18 N -0.448 5.448 19 C 0.208 3.792 20 N -0.487 5.487 21 C -0.025 4.025 22 C -0.118 4.118 23 C -0.145 4.145 24 H 0.143 0.857 25 C 0.471 3.529 26 F -0.182 7.182 27 F -0.178 7.178 28 F -0.184 7.184 29 C 0.102 3.898 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.271 0.729 36 H 0.402 0.598 37 H 0.207 0.793 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.991 11.361 22.407 31.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.139 3.861 4 H 0.051 0.949 5 C -0.566 4.566 6 H 0.068 0.932 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.753 3.247 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.175 1.175 13 N -0.340 5.340 14 C 0.373 3.627 15 O -0.466 6.466 16 C -0.218 4.218 17 C -0.090 4.090 18 N -0.130 5.130 19 C -0.057 4.057 20 N -0.207 5.207 21 C -0.064 4.064 22 C -0.156 4.156 23 C -0.164 4.164 24 H 0.161 0.839 25 C 0.416 3.584 26 F -0.163 7.163 27 F -0.159 7.159 28 F -0.166 7.166 29 C -0.019 4.019 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.224 0.776 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.142 0.858 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.689 11.075 21.749 30.740 hybrid contribution -0.522 0.468 -0.776 1.046 sum -19.211 11.543 20.973 30.695 Atomic orbital electron populations 1.21754 0.95597 1.00358 1.01190 1.21981 0.95249 0.97819 1.01145 1.18961 0.93269 0.90402 0.83507 0.94864 1.21206 0.90341 1.50582 0.94521 0.93211 1.25638 0.95892 0.93802 1.01473 1.69987 1.11324 1.50353 1.25318 0.86021 0.80052 0.79334 0.79317 1.20014 1.20051 1.17503 1.46228 1.15131 1.55315 1.17294 1.17354 0.81907 0.77685 0.85731 1.90706 1.51939 1.62531 1.41444 1.20610 0.94930 1.11341 0.94939 1.22580 1.00215 0.99306 0.86866 1.45211 1.14469 1.42342 1.10957 1.24316 0.82858 0.99761 0.98771 1.70352 1.31581 1.18543 1.00212 1.20384 0.97910 1.04825 0.83270 1.21804 0.95648 0.98731 0.99410 1.22763 0.96227 1.02771 0.94664 0.83939 1.20119 0.82247 0.75923 0.80120 1.93211 1.74608 1.58276 1.90252 1.93214 1.83204 1.83261 1.56216 1.93222 1.77719 1.67289 1.78348 1.22218 0.89114 0.97597 0.93009 0.92252 0.93605 0.94291 0.92504 0.92677 0.91995 0.76300 0.77623 0.86981 0.86800 0.86182 0.89276 0.85750 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.53 71.98 0.61 -4.71 16 2 C -0.12 -5.55 5.59 30.59 0.17 -5.38 16 3 C 0.24 12.18 1.89 44.24 0.08 12.26 16 4 H 0.03 1.79 4.73 -2.38 -0.01 1.78 16 5 C -0.53 -30.29 9.05 25.60 0.23 -30.06 16 6 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 7 C 0.03 1.88 5.47 84.66 0.46 2.34 16 8 N -0.93 -57.30 13.96 21.45 0.30 -57.00 16 9 Si 0.93 45.89 26.99 68.60 1.85 47.74 16 10 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.25 -12.03 6.82 99.48 0.68 -11.35 16 13 N -0.69 -31.48 5.02 -449.46 -2.26 -33.74 16 14 C 0.59 24.83 6.41 86.63 0.56 25.39 16 15 O -0.58 -26.83 14.02 -4.10 -0.06 -26.89 16 16 C -0.09 -3.09 6.98 40.52 0.28 -2.81 16 17 C 0.05 1.26 11.32 83.84 0.95 2.21 16 18 N -0.45 -8.04 3.11 -512.76 -1.60 -9.64 16 19 C 0.21 4.40 7.64 138.05 1.05 5.46 16 20 N -0.49 -15.29 11.00 -176.09 -1.94 -17.22 16 21 C -0.03 -0.27 6.33 30.11 0.19 -0.08 16 22 C -0.12 -0.64 5.00 30.77 0.15 -0.49 16 23 C -0.14 -0.84 2.17 -10.67 -0.02 -0.87 16 24 H 0.14 0.57 8.11 -2.39 -0.02 0.55 16 25 C 0.47 3.54 2.69 71.98 0.19 3.73 16 26 F -0.18 -1.69 16.33 44.97 0.73 -0.96 16 27 F -0.18 -1.61 16.64 44.97 0.75 -0.86 16 28 F -0.18 -1.79 16.98 44.97 0.76 -1.02 16 29 C 0.10 0.86 5.99 86.45 0.52 1.38 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.88 5.63 -2.38 -0.01 1.87 16 32 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 33 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.40 17.86 8.30 -92.71 -0.77 17.09 16 37 H 0.21 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 0.22 7.55 -2.39 -0.02 0.20 16 41 H 0.09 0.52 8.05 -2.39 -0.02 0.50 16 42 H 0.12 0.69 8.07 -2.39 -0.02 0.67 16 43 H 0.11 0.74 7.57 -2.39 -0.02 0.72 16 Total: -1.00 -75.78 361.18 4.26 -71.52 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.27 Total: 19.70 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.44 Total: 8.37 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -5.49 Total: -117.60 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 2.25 Total: -2.84 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.85 Total: 47.74 kcal Total: -75.78 4.26 -71.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153960003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.689 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds