Wall clock time and date at job start Wed Apr 1 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36841 * 120.00116 * 2 1 4 4 H 1.08000 * 120.00195 * 202.80299 * 3 2 1 5 5 C 1.39061 * 120.00251 * 22.79956 * 3 2 1 6 6 N 1.31364 * 119.99688 * 19.08238 * 5 3 2 7 7 Si 1.86802 * 120.00334 * 199.08234 * 5 3 2 8 8 H 1.48498 * 109.47003 * 60.00037 * 7 5 3 9 9 H 1.48505 * 109.46881 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46981 * 299.99735 * 7 5 3 11 11 C 1.34776 * 120.00130 * 180.02562 * 2 1 3 12 12 O 1.21603 * 120.00442 * 192.18200 * 11 2 1 13 13 C 1.47605 * 119.99797 * 12.17197 * 11 2 1 14 14 C 1.40280 * 119.85939 * 341.97234 * 13 11 2 15 15 C 1.36153 * 120.45143 * 179.97438 * 14 13 11 16 16 C 1.40052 * 119.98790 * 0.03032 * 15 14 13 17 17 C 1.46078 * 133.71859 * 180.02562 * 16 15 14 18 18 N 1.30153 * 107.95838 * 179.97438 * 17 16 15 19 19 N 1.39863 * 110.16436 * 359.78976 * 18 17 16 20 20 C 1.34771 * 125.53647 * 180.25731 * 19 18 17 21 21 O 1.21439 * 120.00665 * 180.10272 * 20 19 18 22 22 O 1.34600 * 119.99622 * 0.10866 * 20 19 18 23 23 C 1.45201 * 116.99918 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.46911 * 59.99888 * 23 22 20 25 25 C 1.52997 * 109.47006 * 179.97438 * 23 22 20 26 26 C 1.53004 * 109.47012 * 299.99953 * 23 22 20 27 27 C 1.37835 * 108.93232 * 0.35237 * 19 18 17 28 28 C 1.38729 * 133.68321 * 179.97438 * 27 19 18 29 29 H 1.08998 * 109.46850 * 247.44044 * 1 2 3 30 30 H 1.09002 * 109.46549 * 7.43253 * 1 2 3 31 31 H 1.08993 * 109.47460 * 127.43511 * 1 2 3 32 32 H 0.96994 * 119.99922 * 179.97438 * 6 5 3 33 33 H 1.07997 * 119.77506 * 359.96719 * 14 13 11 34 34 H 1.07994 * 120.00586 * 179.97438 * 15 14 13 35 35 H 1.08001 * 126.02083 * 359.91711 * 17 16 15 36 36 H 1.08996 * 109.47156 * 60.00229 * 24 23 22 37 37 H 1.09005 * 109.46919 * 180.02562 * 24 23 22 38 38 H 1.08998 * 109.47321 * 299.99690 * 24 23 22 39 39 H 1.08999 * 109.47075 * 60.00023 * 25 23 22 40 40 H 1.09002 * 109.47145 * 179.97438 * 25 23 22 41 41 H 1.08996 * 109.47278 * 299.99903 * 25 23 22 42 42 H 1.09005 * 109.47140 * 59.99909 * 26 23 22 43 43 H 1.08996 * 109.47116 * 179.97438 * 26 23 22 44 44 H 1.08999 * 109.47238 * 300.00081 * 26 23 22 45 45 H 1.08008 * 120.18965 * 359.70263 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1659 1.2216 -0.3625 5 6 1.5355 2.3424 0.4667 6 7 0.4757 2.2583 1.2383 7 14 2.2181 4.0164 -0.0036 8 1 2.1889 4.1656 -1.4808 9 1 1.3903 5.0810 0.6184 10 1 3.6178 4.1334 0.4783 11 6 2.1389 -1.1672 -0.0005 12 8 3.3344 -1.1792 0.2217 13 6 1.4258 -2.4310 -0.2706 14 6 0.0290 -2.4838 -0.1521 15 6 -0.6411 -3.6431 -0.3989 16 6 0.0646 -4.7934 -0.7733 17 6 -0.3337 -6.1599 -1.1017 18 7 0.7428 -6.8347 -1.3843 19 7 1.8693 -6.0130 -1.2757 20 6 3.1417 -6.3938 -1.5045 21 8 4.0470 -5.5944 -1.3779 22 8 3.4090 -7.6603 -1.8734 23 6 4.8019 -7.9998 -2.1036 24 6 5.6021 -7.7678 -0.8203 25 6 4.9076 -9.4708 -2.5111 26 6 5.3636 -7.1188 -3.2213 27 6 1.4672 -4.7509 -0.8945 28 6 2.1424 -3.5656 -0.6419 29 1 -0.3633 -0.3943 0.9490 30 1 -0.3632 1.0191 -0.1329 31 1 -0.3634 -0.6246 -0.8159 32 1 0.0478 3.0655 1.5641 33 1 -0.5186 -1.5990 0.1370 34 1 -1.7165 -3.6757 -0.3050 35 1 -1.3434 -6.5431 -1.1080 36 1 5.2019 -8.3955 -0.0242 37 1 6.6478 -8.0223 -0.9933 38 1 5.5268 -6.7200 -0.5296 39 1 4.3375 -9.6364 -3.4252 40 1 5.9532 -9.7255 -2.6843 41 1 4.5076 -10.0981 -1.7146 42 1 5.2883 -6.0709 -2.9305 43 1 6.4093 -7.3733 -3.3937 44 1 4.7935 -7.2840 -4.1355 45 1 3.2178 -3.5231 -0.7330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155328395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:09 Heat of formation + Delta-G solvation = 30.259202 kcal Electronic energy + Delta-G solvation = -30288.838157 eV Core-core repulsion = 26082.781899 eV Total energy + Delta-G solvation = -4206.056259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93373 -40.50388 -39.05999 -37.21879 -36.44876 -35.00135 -34.33922 -32.77309 -32.06863 -30.06246 -29.94511 -27.65416 -27.59689 -26.81626 -25.29831 -24.41317 -23.16394 -22.07412 -21.55680 -19.78751 -19.37129 -18.10416 -17.53941 -17.15617 -16.82686 -16.49931 -15.72722 -15.35830 -14.99326 -14.91887 -14.69470 -14.38906 -14.25527 -13.95992 -13.89207 -13.71813 -13.60155 -13.12541 -12.74069 -12.50140 -12.44883 -12.16283 -12.14637 -11.99540 -11.75757 -11.73366 -11.58431 -11.43234 -11.35908 -11.13018 -10.93388 -10.64176 -10.61600 -10.47178 -10.38486 -10.34805 -9.88734 -9.06368 -8.61800 -8.44458 -8.19678 -7.80812 -6.54299 -3.98632 0.59399 1.46650 1.50684 2.01299 2.84909 3.10917 3.13437 3.16690 3.20621 3.58418 3.98573 4.32962 4.39854 4.44063 4.47857 4.50651 4.63141 4.64560 4.86407 4.99442 5.21710 5.23389 5.31153 5.36731 5.37613 5.45598 5.51769 5.58938 5.62620 5.63526 5.75249 5.86334 6.06807 6.07577 6.10358 6.17409 6.21270 6.36742 6.45315 6.49853 6.73461 6.77176 6.98529 7.06087 7.22891 7.38716 7.95690 7.97477 8.32541 9.01474 9.20458 9.82810 10.48215 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.002729 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.673983 B =10256.199954 C =11607.758884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.422 5.422 3 C -0.298 4.298 4 H 0.103 0.897 5 C 0.031 3.969 6 N -0.864 5.864 7 Si 0.929 3.071 8 H -0.271 1.271 9 H -0.282 1.282 10 H -0.270 1.270 11 C 0.467 3.533 12 O -0.580 6.580 13 C -0.045 4.045 14 C -0.169 4.169 15 C -0.053 4.053 16 C -0.169 4.169 17 C 0.116 3.884 18 N -0.246 5.246 19 N -0.369 5.369 20 C 0.685 3.315 21 O -0.517 6.517 22 O -0.336 6.336 23 C 0.129 3.871 24 C -0.187 4.187 25 C -0.138 4.138 26 C -0.186 4.186 27 C 0.121 3.879 28 C -0.078 4.078 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.273 0.727 33 H 0.188 0.812 34 H 0.135 0.865 35 H 0.208 0.792 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 -17.966 -6.251 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.138 5.138 3 C -0.426 4.426 4 H 0.120 0.880 5 C -0.174 4.174 6 N -0.502 5.502 7 Si 0.755 3.245 8 H -0.196 1.196 9 H -0.207 1.207 10 H -0.195 1.195 11 C 0.258 3.742 12 O -0.466 6.466 13 C -0.051 4.051 14 C -0.187 4.187 15 C -0.074 4.074 16 C -0.176 4.176 17 C -0.086 4.086 18 N -0.056 5.056 19 N -0.178 5.178 20 C 0.442 3.558 21 O -0.401 6.401 22 O -0.250 6.250 23 C 0.093 3.907 24 C -0.244 4.244 25 C -0.195 4.195 26 C -0.244 4.244 27 C 0.018 3.982 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.204 0.796 34 H 0.153 0.847 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.449 -18.713 -6.386 19.826 hybrid contribution -0.056 1.362 0.127 1.369 sum -1.506 -17.351 -6.259 18.507 Atomic orbital electron populations 1.22422 0.82012 1.04677 0.98108 1.43477 1.05402 1.04686 1.60278 1.19752 1.00214 0.83296 1.39296 0.87958 1.25413 0.96795 1.00509 0.94723 1.69949 1.21225 1.30294 1.28687 0.85939 0.79204 0.80261 0.79100 1.19616 1.20707 1.19497 1.17817 0.87641 0.82683 0.86095 1.90642 1.15293 1.85926 1.54713 1.20291 0.93508 0.94571 0.96761 1.23166 0.94573 1.00728 1.00259 1.20340 0.99696 0.90012 0.97352 1.20079 0.91930 0.95346 1.10197 1.25521 0.98244 0.90477 0.94348 1.76841 0.91885 1.17582 1.19304 1.45352 1.04140 1.07935 1.60369 1.17307 0.80663 0.82007 0.75818 1.91014 1.41755 1.53464 1.53820 1.86437 1.31943 1.26716 1.79930 1.22286 0.76070 0.96041 0.96338 1.22550 1.00302 1.05179 0.96348 1.21839 1.02937 0.92057 1.02665 1.22547 1.01654 1.02544 0.97607 1.18492 0.93479 0.85504 1.00755 1.20481 1.01534 0.88152 0.99848 0.92509 0.88005 0.93199 0.91642 0.79628 0.84673 0.77546 0.91899 0.90635 0.89355 0.91313 0.89895 0.91299 0.89379 0.90633 0.91909 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 7.33 59.85 0.44 1.88 16 2 N -0.42 -10.59 3.00 -143.69 -0.43 -11.02 16 3 C -0.30 -8.03 9.18 -15.01 -0.14 -8.17 16 4 H 0.10 2.89 7.60 -52.49 -0.40 2.49 16 5 C 0.03 0.77 4.89 -17.45 -0.09 0.68 16 6 N -0.86 -21.66 10.90 55.50 0.61 -21.06 16 7 Si 0.93 19.67 29.59 -169.99 -5.03 14.64 16 8 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 9 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 C 0.47 11.84 7.48 -12.44 -0.09 11.75 16 12 O -0.58 -16.90 16.28 5.27 0.09 -16.82 16 13 C -0.04 -0.93 5.83 -104.94 -0.61 -1.54 16 14 C -0.17 -2.77 7.88 -39.56 -0.31 -3.09 16 15 C -0.05 -0.71 10.04 -39.65 -0.40 -1.11 16 16 C -0.17 -2.44 6.36 -105.09 -0.67 -3.11 16 17 C 0.12 1.34 12.27 -15.12 -0.19 1.15 16 18 N -0.25 -3.61 12.16 31.89 0.39 -3.22 16 19 N -0.37 -6.34 3.67 -14.35 -0.05 -6.39 16 20 C 0.68 11.72 7.99 54.05 0.43 12.15 16 21 O -0.52 -9.62 10.59 -19.22 -0.20 -9.83 16 22 O -0.34 -4.95 9.74 -40.22 -0.39 -5.34 16 23 C 0.13 1.48 1.13 -90.62 -0.10 1.38 16 24 C -0.19 -2.10 8.37 37.16 0.31 -1.79 16 25 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 26 C -0.19 -2.08 8.37 37.16 0.31 -1.77 16 27 C 0.12 2.16 6.75 -84.00 -0.57 1.60 16 28 C -0.08 -1.58 9.08 -39.03 -0.35 -1.93 16 29 H 0.06 1.11 6.94 -51.93 -0.36 0.75 16 30 H 0.10 2.22 5.66 -51.93 -0.29 1.93 16 31 H 0.05 0.86 5.60 -51.93 -0.29 0.56 16 32 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 33 H 0.19 2.88 2.80 -78.17 -0.22 2.66 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.15 3.35 6.50 -52.48 -0.34 3.01 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -33.35 367.34 -6.64 -40.00 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.45 Total: 6.22 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.69 Total: 7.29 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.51 Total: -41.69 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.51 Total: -31.98 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.35 -6.64 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155328395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.256 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds