Wall clock time and date at job start Wed Apr 1 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36841 * 120.00116 * 2 1 4 4 H 1.08000 * 120.00195 * 202.80299 * 3 2 1 5 5 C 1.39061 * 120.00251 * 22.79956 * 3 2 1 6 6 N 1.31364 * 119.99688 * 19.08238 * 5 3 2 7 7 Si 1.86802 * 120.00334 * 199.08234 * 5 3 2 8 8 H 1.48498 * 109.47003 * 60.00037 * 7 5 3 9 9 H 1.48505 * 109.46881 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46981 * 299.99735 * 7 5 3 11 11 C 1.34776 * 120.00130 * 180.02562 * 2 1 3 12 12 O 1.21603 * 120.00442 * 192.18200 * 11 2 1 13 13 C 1.47605 * 119.99797 * 12.17197 * 11 2 1 14 14 C 1.40280 * 119.85939 * 341.97234 * 13 11 2 15 15 C 1.36153 * 120.45143 * 179.97438 * 14 13 11 16 16 C 1.40052 * 119.98790 * 0.03032 * 15 14 13 17 17 C 1.46078 * 133.71859 * 180.02562 * 16 15 14 18 18 N 1.30153 * 107.95838 * 179.97438 * 17 16 15 19 19 N 1.39863 * 110.16436 * 359.78976 * 18 17 16 20 20 C 1.34771 * 125.53647 * 180.25731 * 19 18 17 21 21 O 1.21439 * 120.00665 * 180.10272 * 20 19 18 22 22 O 1.34600 * 119.99622 * 0.10866 * 20 19 18 23 23 C 1.45201 * 116.99918 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.46911 * 59.99888 * 23 22 20 25 25 C 1.52997 * 109.47006 * 179.97438 * 23 22 20 26 26 C 1.53004 * 109.47012 * 299.99953 * 23 22 20 27 27 C 1.37835 * 108.93232 * 0.35237 * 19 18 17 28 28 C 1.38729 * 133.68321 * 179.97438 * 27 19 18 29 29 H 1.08998 * 109.46850 * 247.44044 * 1 2 3 30 30 H 1.09002 * 109.46549 * 7.43253 * 1 2 3 31 31 H 1.08993 * 109.47460 * 127.43511 * 1 2 3 32 32 H 0.96994 * 119.99922 * 179.97438 * 6 5 3 33 33 H 1.07997 * 119.77506 * 359.96719 * 14 13 11 34 34 H 1.07994 * 120.00586 * 179.97438 * 15 14 13 35 35 H 1.08001 * 126.02083 * 359.91711 * 17 16 15 36 36 H 1.08996 * 109.47156 * 60.00229 * 24 23 22 37 37 H 1.09005 * 109.46919 * 180.02562 * 24 23 22 38 38 H 1.08998 * 109.47321 * 299.99690 * 24 23 22 39 39 H 1.08999 * 109.47075 * 60.00023 * 25 23 22 40 40 H 1.09002 * 109.47145 * 179.97438 * 25 23 22 41 41 H 1.08996 * 109.47278 * 299.99903 * 25 23 22 42 42 H 1.09005 * 109.47140 * 59.99909 * 26 23 22 43 43 H 1.08996 * 109.47116 * 179.97438 * 26 23 22 44 44 H 1.08999 * 109.47238 * 300.00081 * 26 23 22 45 45 H 1.08008 * 120.18965 * 359.70263 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1659 1.2216 -0.3625 5 6 1.5355 2.3424 0.4667 6 7 0.4757 2.2583 1.2383 7 14 2.2181 4.0164 -0.0036 8 1 2.1889 4.1656 -1.4808 9 1 1.3903 5.0810 0.6184 10 1 3.6178 4.1334 0.4783 11 6 2.1389 -1.1672 -0.0005 12 8 3.3344 -1.1792 0.2217 13 6 1.4258 -2.4310 -0.2706 14 6 0.0290 -2.4838 -0.1521 15 6 -0.6411 -3.6431 -0.3989 16 6 0.0646 -4.7934 -0.7733 17 6 -0.3337 -6.1599 -1.1017 18 7 0.7428 -6.8347 -1.3843 19 7 1.8693 -6.0130 -1.2757 20 6 3.1417 -6.3938 -1.5045 21 8 4.0470 -5.5944 -1.3779 22 8 3.4090 -7.6603 -1.8734 23 6 4.8019 -7.9998 -2.1036 24 6 5.6021 -7.7678 -0.8203 25 6 4.9076 -9.4708 -2.5111 26 6 5.3636 -7.1188 -3.2213 27 6 1.4672 -4.7509 -0.8945 28 6 2.1424 -3.5656 -0.6419 29 1 -0.3633 -0.3943 0.9490 30 1 -0.3632 1.0191 -0.1329 31 1 -0.3634 -0.6246 -0.8159 32 1 0.0478 3.0655 1.5641 33 1 -0.5186 -1.5990 0.1370 34 1 -1.7165 -3.6757 -0.3050 35 1 -1.3434 -6.5431 -1.1080 36 1 5.2019 -8.3955 -0.0242 37 1 6.6478 -8.0223 -0.9933 38 1 5.5268 -6.7200 -0.5296 39 1 4.3375 -9.6364 -3.4252 40 1 5.9532 -9.7255 -2.6843 41 1 4.5076 -10.0981 -1.7146 42 1 5.2883 -6.0709 -2.9305 43 1 6.4093 -7.3733 -3.3937 44 1 4.7935 -7.2840 -4.1355 45 1 3.2178 -3.5231 -0.7330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155328395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:08 Heat of formation + Delta-G solvation = 7.790837 kcal Electronic energy + Delta-G solvation = -30289.812459 eV Core-core repulsion = 26082.781899 eV Total energy + Delta-G solvation = -4207.030560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.15913 -41.70648 -40.76405 -38.40663 -37.90522 -36.95917 -35.36056 -34.00053 -33.91711 -31.43634 -31.37295 -28.51935 -28.51073 -28.39422 -27.09388 -25.65247 -24.67554 -23.25533 -22.73871 -21.25223 -20.67993 -19.48760 -19.14638 -18.73322 -18.05244 -17.66602 -17.18683 -16.90524 -16.50926 -16.20076 -16.11119 -15.86009 -15.57305 -15.42617 -15.19574 -14.95426 -14.70101 -14.49955 -14.21833 -13.76157 -13.49769 -13.37616 -13.30411 -13.07505 -13.04407 -13.02398 -12.95115 -12.85061 -12.66658 -12.54821 -12.42983 -12.15941 -12.12103 -11.65104 -11.62735 -11.56348 -11.41042 -10.88871 -10.56240 -9.89587 -9.79196 -9.42721 -8.46408 -6.03479 -0.69233 0.13257 0.34215 0.79596 1.40270 1.41517 1.51690 1.65365 2.00576 2.05788 2.23762 2.70911 2.86741 3.06585 3.33768 3.46817 3.55406 3.58964 3.63960 3.78364 3.79871 4.07687 4.16495 4.33993 4.43565 4.48820 4.53438 4.61287 4.63304 4.70750 4.72264 4.78026 4.84614 4.88629 4.99210 5.10834 5.11792 5.14060 5.16809 5.25123 5.30374 5.36687 5.40320 5.62776 5.71673 6.02125 6.04939 6.40119 6.75468 7.04805 7.28884 7.89669 8.54561 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.002729 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.673983 B =10256.199954 C =11607.758884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.432 5.432 3 C -0.348 4.348 4 H 0.069 0.931 5 C 0.007 3.993 6 N -0.873 5.873 7 Si 0.991 3.009 8 H -0.264 1.264 9 H -0.262 1.262 10 H -0.281 1.281 11 C 0.450 3.550 12 O -0.642 6.642 13 C -0.066 4.066 14 C -0.171 4.171 15 C -0.015 4.015 16 C -0.156 4.156 17 C 0.154 3.846 18 N -0.266 5.266 19 N -0.384 5.384 20 C 0.678 3.322 21 O -0.547 6.547 22 O -0.337 6.337 23 C 0.116 3.884 24 C -0.184 4.184 25 C -0.130 4.130 26 C -0.183 4.183 27 C 0.097 3.903 28 C -0.100 4.100 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.282 0.718 33 H 0.200 0.800 34 H 0.203 0.797 35 H 0.276 0.724 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 -20.165 -6.906 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.147 5.147 3 C -0.476 4.476 4 H 0.087 0.913 5 C -0.198 4.198 6 N -0.510 5.510 7 Si 0.814 3.186 8 H -0.188 1.188 9 H -0.186 1.186 10 H -0.206 1.206 11 C 0.242 3.758 12 O -0.532 6.532 13 C -0.071 4.071 14 C -0.189 4.189 15 C -0.035 4.035 16 C -0.162 4.162 17 C -0.048 4.048 18 N -0.076 5.076 19 N -0.192 5.192 20 C 0.435 3.565 21 O -0.432 6.432 22 O -0.251 6.251 23 C 0.080 3.920 24 C -0.241 4.241 25 C -0.187 4.187 26 C -0.240 4.240 27 C -0.006 4.006 28 C -0.123 4.123 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.216 0.784 34 H 0.220 0.780 35 H 0.291 0.709 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.631 -20.933 -7.046 22.793 hybrid contribution 1.170 1.879 0.342 2.239 sum -4.461 -19.054 -6.704 20.686 Atomic orbital electron populations 1.22611 0.79191 1.04801 1.00182 1.43713 1.07245 1.04011 1.59765 1.19650 1.00072 0.85280 1.42550 0.91346 1.26113 0.96921 1.02958 0.93784 1.69982 1.21346 1.31634 1.28014 0.85040 0.78099 0.76307 0.79171 1.18846 1.18579 1.20626 1.18669 0.87369 0.84440 0.85298 1.90569 1.18108 1.87206 1.57325 1.19958 0.95527 0.92150 0.99512 1.23218 0.92133 1.02891 1.00637 1.20956 1.02406 0.87403 0.92697 1.20582 0.89999 0.97345 1.08301 1.26587 0.99843 0.87952 0.90375 1.76896 0.91903 1.17819 1.20951 1.45565 1.04839 1.07994 1.60822 1.17573 0.80756 0.82507 0.75630 1.91018 1.42807 1.54407 1.54995 1.86455 1.34013 1.25180 1.79442 1.22763 0.74683 0.98239 0.96292 1.22519 1.02149 1.02777 0.96621 1.21880 1.04937 0.88979 1.02875 1.22515 1.03532 1.00321 0.97654 1.18631 0.95455 0.85160 1.01332 1.20127 0.99792 0.90034 1.02386 0.91350 0.89367 0.89334 0.90744 0.78425 0.78010 0.70911 0.91492 0.87908 0.93123 0.90813 0.87082 0.90854 0.93090 0.87921 0.91423 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.97 7.33 127.77 0.94 3.90 16 2 N -0.43 -22.80 3.00 -726.77 -2.18 -24.98 16 3 C -0.35 -19.95 9.18 84.11 0.77 -19.18 16 4 H 0.07 4.26 7.60 -2.91 -0.02 4.24 16 5 C 0.01 0.34 4.89 84.96 0.42 0.76 16 6 N -0.87 -43.77 10.90 21.68 0.24 -43.53 16 7 Si 0.99 41.00 29.59 68.60 2.03 43.03 16 8 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 9 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 11 C 0.45 24.66 7.48 86.72 0.65 25.31 16 12 O -0.64 -41.56 16.28 -4.04 -0.07 -41.63 16 13 C -0.07 -2.85 5.83 -20.07 -0.12 -2.96 16 14 C -0.17 -5.21 7.88 22.28 0.18 -5.04 16 15 C -0.01 -0.31 10.04 22.22 0.22 -0.09 16 16 C -0.16 -3.88 6.36 -20.17 -0.13 -4.01 16 17 C 0.15 2.69 12.27 86.98 1.07 3.75 16 18 N -0.27 -7.08 12.16 -53.02 -0.64 -7.73 16 19 N -0.38 -13.29 3.67 -429.77 -1.58 -14.86 16 20 C 0.68 24.58 7.99 129.79 1.04 25.61 16 21 O -0.55 -22.72 10.59 20.04 0.21 -22.50 16 22 O -0.34 -10.14 9.74 -55.09 -0.54 -10.68 16 23 C 0.12 2.66 1.13 -10.79 -0.01 2.65 16 24 C -0.18 -4.28 8.37 71.98 0.60 -3.68 16 25 C -0.13 -1.84 8.85 71.98 0.64 -1.20 16 26 C -0.18 -4.22 8.37 71.98 0.60 -3.62 16 27 C 0.10 3.52 6.75 38.96 0.26 3.78 16 28 C -0.10 -4.42 9.08 22.63 0.21 -4.22 16 29 H 0.07 2.58 6.94 -2.39 -0.02 2.56 16 30 H 0.09 3.81 5.66 -2.39 -0.01 3.80 16 31 H 0.09 2.86 5.60 -2.39 -0.01 2.85 16 32 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 33 H 0.20 5.53 2.80 -27.03 -0.08 5.46 16 34 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.28 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.05 1.59 5.88 -2.39 -0.01 1.57 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.58 5.88 -2.38 -0.01 1.56 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 5.47 6.50 -2.91 -0.02 5.45 16 Total: -1.00 -85.83 367.34 5.78 -80.05 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.98 Total: 21.06 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 7.33 Total: 21.77 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -4.17 Total: -91.10 kcal Atomic # 8 Polarization: -74.42 SS G_CDS: -0.39 Total: -74.81 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -85.83 5.78 -80.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155328395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.843 kcal (2) G-P(sol) polarization free energy of solvation -85.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds