Wall clock time and date at job start Wed Apr 1 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38005 * 119.89665 * 263.42471 * 3 2 1 5 5 C 1.40709 * 119.04223 * 180.02562 * 4 3 2 6 6 N 1.34797 * 120.57302 * 180.02562 * 5 4 3 7 7 C 1.32252 * 119.99685 * 185.62586 * 6 5 4 8 8 O 1.21728 * 119.99630 * 55.85473 * 7 6 5 9 9 C 1.50692 * 120.00130 * 235.84758 * 7 6 5 10 10 H 1.09001 * 109.46801 * 60.00363 * 9 7 6 11 11 C 1.50696 * 109.47281 * 300.00461 * 9 7 6 12 12 H 1.08001 * 120.00352 * 294.56819 * 11 9 7 13 13 C 1.37882 * 120.00207 * 114.57157 * 11 9 7 14 14 N 1.31506 * 120.00146 * 184.35866 * 13 11 9 15 15 Si 1.86806 * 119.99692 * 4.35899 * 13 11 9 16 16 H 1.48504 * 109.46934 * 94.19263 * 15 13 11 17 17 H 1.48498 * 109.47094 * 214.18599 * 15 13 11 18 18 H 1.48494 * 109.47080 * 334.19077 * 15 13 11 19 19 N 1.46501 * 109.47088 * 180.02562 * 9 7 6 20 20 C 1.34783 * 119.99724 * 209.58086 * 19 9 7 21 21 O 1.21504 * 120.00202 * 359.97438 * 20 19 9 22 22 O 1.34639 * 119.99510 * 180.02562 * 20 19 9 23 23 C 1.45204 * 116.99510 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.47268 * 60.00160 * 23 22 20 25 25 C 1.53001 * 109.46523 * 180.02562 * 23 22 20 26 26 C 1.52993 * 109.47261 * 299.99618 * 23 22 20 27 27 C 1.41336 * 118.84894 * 0.27774 * 5 4 3 28 28 C 1.35161 * 119.71265 * 359.41546 * 27 5 4 29 29 N 1.35590 * 120.96691 * 0.61989 * 28 27 5 30 30 H 0.96994 * 119.39142 * 179.68388 * 29 28 27 31 31 H 4.50555 * 14.04080 * 0.02562 * 4 2 1 32 32 H 1.07996 * 120.47694 * 0.05028 * 4 3 2 33 33 H 0.97003 * 120.00499 * 180.02562 * 14 13 11 34 34 H 0.96995 * 120.00157 * 29.58179 * 19 9 7 35 35 H 1.09005 * 109.47042 * 59.99761 * 24 23 22 36 36 H 1.08995 * 109.46985 * 179.97438 * 24 23 22 37 37 H 1.08995 * 109.47089 * 300.00002 * 24 23 22 38 38 H 1.08998 * 109.47428 * 60.00390 * 25 23 22 39 39 H 1.09007 * 109.46651 * 180.02562 * 25 23 22 40 40 H 1.08996 * 109.47455 * 299.99731 * 25 23 22 41 41 H 1.09007 * 109.47238 * 60.00037 * 26 23 22 42 42 H 1.09002 * 109.47469 * 180.02562 * 26 23 22 43 43 H 1.09007 * 109.47625 * 300.00324 * 26 23 22 44 44 H 1.07999 * 120.13885 * 179.72919 * 27 5 4 45 45 H 1.07995 * 119.51690 * 180.31957 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2938 0.1379 1.1885 5 6 4.7007 0.1367 1.1676 6 7 5.4035 0.2682 2.3103 7 6 6.7208 0.3775 2.2676 8 8 7.2373 1.2569 1.6031 9 6 7.5823 -0.5867 3.0415 10 1 7.3910 -1.6027 2.6961 11 6 7.2561 -0.4852 4.5092 12 1 7.4670 0.4270 5.0475 13 6 6.6883 -1.5571 5.1650 14 7 6.3248 -1.4405 6.4234 15 14 6.4356 -3.1748 4.2657 16 1 7.5954 -4.0675 4.5175 17 1 5.1944 -3.8255 4.7569 18 1 6.3162 -2.9175 2.8081 19 7 8.9942 -0.2568 2.8316 20 6 9.9280 -1.2274 2.8839 21 8 9.5989 -2.3758 3.1056 22 8 11.2256 -0.9240 2.6915 23 6 12.1761 -2.0195 2.7626 24 6 11.8347 -3.0610 1.6952 25 6 13.5891 -1.4849 2.5209 26 6 12.1061 -2.6664 4.1473 27 6 5.3642 0.0006 -0.0729 28 6 4.6422 -0.1369 -1.2072 29 7 3.2866 -0.1340 -1.1761 30 1 2.7913 -0.2297 -2.0045 31 1 -1.0500 -0.0005 -0.0001 32 1 2.7598 0.2444 2.1212 33 1 5.9257 -2.1946 6.8849 34 1 9.2570 0.6600 2.6550 35 1 11.8846 -2.6001 0.7087 36 1 12.5484 -3.8830 1.7483 37 1 10.8281 -3.4417 1.8678 38 1 13.8321 -0.7431 3.2817 39 1 14.3026 -2.3073 2.5738 40 1 13.6394 -1.0237 1.5346 41 1 11.0993 -3.0471 4.3201 42 1 12.8199 -3.4884 4.2009 43 1 12.3493 -1.9243 4.9079 44 1 6.4434 0.0014 -0.1136 45 1 5.1524 -0.2459 -2.1528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180779518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:56 Heat of formation + Delta-G solvation = 13.507819 kcal Electronic energy + Delta-G solvation = -30198.994535 eV Core-core repulsion = 25992.211882 eV Total energy + Delta-G solvation = -4206.782653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72582 -39.97446 -38.76968 -36.56841 -34.85924 -34.16681 -33.84856 -33.48214 -32.08898 -30.97131 -30.65904 -28.14953 -27.14527 -27.01356 -24.81892 -23.68643 -23.11102 -21.51553 -20.35152 -19.32410 -18.87560 -18.09404 -17.73435 -17.06510 -16.58065 -16.16073 -15.88685 -15.31138 -15.24144 -14.95998 -14.58538 -14.51864 -14.37643 -14.03531 -13.81617 -13.36206 -13.14236 -12.82526 -12.64346 -12.24610 -12.15742 -12.05551 -11.91338 -11.84646 -11.55711 -11.42900 -11.31409 -11.23731 -11.08337 -10.92366 -10.84290 -10.70797 -9.96999 -9.78062 -9.61476 -9.44228 -9.36812 -9.18552 -8.76340 -8.37054 -7.88299 -7.20291 -6.09817 -4.13114 0.53774 1.20015 1.94310 2.62987 2.83614 2.97015 3.18439 3.43160 3.47409 3.59792 3.74539 3.81581 3.93218 4.49526 4.50023 4.78566 4.98169 5.02556 5.06019 5.08392 5.18596 5.20628 5.24928 5.44483 5.64622 5.67776 5.79367 5.87145 5.91814 5.99268 6.04548 6.09300 6.19865 6.23405 6.37433 6.50805 6.63151 6.66825 6.75604 6.79374 6.93366 7.04420 7.17226 7.43890 7.52753 8.21245 8.37541 8.53611 8.90438 9.09841 9.39981 9.51949 11.00866 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003318 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.843316 B = 8437.018603 C = 9553.280659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.172 4.172 3 C 0.241 3.759 4 C -0.140 4.140 5 C 0.283 3.717 6 N -0.572 5.572 7 C 0.504 3.496 8 O -0.556 6.556 9 C 0.221 3.779 10 H 0.092 0.908 11 C -0.503 4.503 12 H 0.079 0.921 13 C 0.096 3.904 14 N -0.879 5.879 15 Si 0.892 3.108 16 H -0.266 1.266 17 H -0.293 1.293 18 H -0.269 1.269 19 N -0.686 5.686 20 C 0.648 3.352 21 O -0.576 6.576 22 O -0.374 6.374 23 C 0.136 3.864 24 C -0.181 4.181 25 C -0.138 4.138 26 C -0.183 4.183 27 C -0.239 4.239 28 C 0.133 3.867 29 N -0.591 5.591 30 H 0.418 0.582 31 H 0.233 0.767 32 H 0.158 0.842 33 H 0.267 0.733 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.149 0.851 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 -1.002 -18.404 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.173 4.173 3 C 0.132 3.868 4 C -0.166 4.166 5 C 0.122 3.878 6 N -0.303 5.303 7 C 0.294 3.706 8 O -0.437 6.437 9 C 0.118 3.882 10 H 0.110 0.890 11 C -0.541 4.541 12 H 0.097 0.903 13 C -0.110 4.110 14 N -0.515 5.515 15 Si 0.721 3.279 16 H -0.191 1.191 17 H -0.219 1.219 18 H -0.195 1.195 19 N -0.343 5.343 20 C 0.401 3.599 21 O -0.466 6.466 22 O -0.289 6.289 23 C 0.098 3.902 24 C -0.238 4.238 25 C -0.195 4.195 26 C -0.240 4.240 27 C -0.266 4.266 28 C 0.004 3.996 29 N -0.197 5.197 30 H 0.253 0.747 31 H 0.250 0.750 32 H 0.176 0.824 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.167 0.833 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.116 -1.158 -17.451 17.967 hybrid contribution 0.065 -0.534 -1.059 1.188 sum -4.050 -1.693 -18.510 19.023 Atomic orbital electron populations 1.25049 0.95679 0.97113 0.95779 1.19198 0.90849 1.03184 1.04036 1.15664 0.85192 0.99655 0.86338 1.21040 0.92545 1.06440 0.96606 1.18664 0.92449 0.88768 0.87959 1.68410 1.08770 1.28365 1.24781 1.22058 0.87054 0.84983 0.76479 1.90654 1.77119 1.35550 1.40398 1.19283 0.75949 0.95519 0.97412 0.89044 1.20733 1.41257 1.02083 0.90053 0.90287 1.24952 0.93037 0.98440 0.94553 1.69895 1.39608 1.31660 1.10295 0.86599 0.77327 0.84155 0.79866 1.19150 1.21944 1.19490 1.45550 1.06095 1.09597 1.73096 1.18085 0.80022 0.84974 0.76833 1.90799 1.81188 1.19445 1.55211 1.86289 1.16473 1.40469 1.85711 1.21864 0.86883 0.85168 0.96238 1.22499 1.04864 0.98604 0.97880 1.21822 0.93204 1.01754 1.02708 1.22507 1.05298 1.00793 0.95424 1.21806 1.02090 1.10489 0.92248 1.21604 0.81518 0.95967 1.00553 1.40993 1.05955 1.64223 1.08573 0.74666 0.75037 0.82443 0.92317 0.77039 0.92642 0.91843 0.89158 0.91661 0.90752 0.91874 0.88828 0.91986 0.92287 0.83325 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 19.25 29.55 0.57 -0.16 16 2 C -0.17 -1.52 13.36 -38.84 -0.52 -2.04 16 3 C 0.24 2.61 6.66 -83.93 -0.56 2.05 16 4 C -0.14 -2.10 9.73 -38.73 -0.38 -2.47 16 5 C 0.28 5.29 6.54 -84.45 -0.55 4.74 16 6 N -0.57 -13.69 10.30 -10.45 -0.11 -13.80 16 7 C 0.50 12.75 5.65 -12.10 -0.07 12.68 16 8 O -0.56 -13.93 15.17 5.16 0.08 -13.85 16 9 C 0.22 5.90 2.47 -70.24 -0.17 5.72 16 10 H 0.09 2.54 3.60 -51.93 -0.19 2.35 16 11 C -0.50 -15.13 9.06 -34.44 -0.31 -15.44 16 12 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 13 C 0.10 2.93 5.47 -17.82 -0.10 2.83 16 14 N -0.88 -27.56 13.96 55.43 0.77 -26.78 16 15 Si 0.89 24.04 26.69 -169.99 -4.54 19.50 16 16 H -0.27 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 18 H -0.27 -7.05 5.98 56.52 0.34 -6.71 16 19 N -0.69 -16.71 4.86 -61.02 -0.30 -17.01 16 20 C 0.65 15.24 8.05 54.06 0.44 15.67 16 21 O -0.58 -14.58 10.60 -19.27 -0.20 -14.79 16 22 O -0.37 -7.56 9.94 -40.32 -0.40 -7.96 16 23 C 0.14 2.25 1.13 -90.62 -0.10 2.15 16 24 C -0.18 -2.82 8.37 37.16 0.31 -2.51 16 25 C -0.14 -1.72 8.85 37.16 0.33 -1.39 16 26 C -0.18 -3.12 8.37 37.15 0.31 -2.81 16 27 C -0.24 -3.66 8.90 -39.50 -0.35 -4.01 16 28 C 0.13 1.24 11.16 -16.99 -0.19 1.05 16 29 N -0.59 -4.68 5.28 -10.61 -0.06 -4.74 16 30 H 0.42 1.63 8.76 -40.82 -0.36 1.27 16 31 H 0.23 0.47 7.80 -54.09 -0.42 0.04 16 32 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 34 H 0.40 9.08 8.02 -40.82 -0.33 8.75 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.69 5.88 -51.93 -0.31 1.38 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.95 5.88 -51.93 -0.31 1.64 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.15 2.55 6.41 -52.49 -0.34 2.21 16 45 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -40.02 385.85 -5.95 -45.97 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.67 Total: 11.58 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -1.35 Total: 16.07 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.31 Total: -62.33 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.53 Total: -36.59 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.54 Total: 19.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -40.02 -5.95 -45.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180779518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.473 kcal (2) G-P(sol) polarization free energy of solvation -40.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds