Wall clock time and date at job start Wed Apr 1 2020 03:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.38005 * 119.89665 * 263.42471 * 3 2 1 5 5 C 1.40709 * 119.04223 * 180.02562 * 4 3 2 6 6 N 1.34797 * 120.57302 * 180.02562 * 5 4 3 7 7 C 1.32252 * 119.99685 * 185.62586 * 6 5 4 8 8 O 1.21728 * 119.99630 * 55.85473 * 7 6 5 9 9 C 1.50692 * 120.00130 * 235.84758 * 7 6 5 10 10 H 1.09001 * 109.46801 * 60.00363 * 9 7 6 11 11 C 1.50696 * 109.47281 * 300.00461 * 9 7 6 12 12 H 1.08001 * 120.00352 * 294.56819 * 11 9 7 13 13 C 1.37882 * 120.00207 * 114.57157 * 11 9 7 14 14 N 1.31506 * 120.00146 * 184.35866 * 13 11 9 15 15 Si 1.86806 * 119.99692 * 4.35899 * 13 11 9 16 16 H 1.48504 * 109.46934 * 94.19263 * 15 13 11 17 17 H 1.48498 * 109.47094 * 214.18599 * 15 13 11 18 18 H 1.48494 * 109.47080 * 334.19077 * 15 13 11 19 19 N 1.46501 * 109.47088 * 180.02562 * 9 7 6 20 20 C 1.34783 * 119.99724 * 209.58086 * 19 9 7 21 21 O 1.21504 * 120.00202 * 359.97438 * 20 19 9 22 22 O 1.34639 * 119.99510 * 180.02562 * 20 19 9 23 23 C 1.45204 * 116.99510 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.47268 * 60.00160 * 23 22 20 25 25 C 1.53001 * 109.46523 * 180.02562 * 23 22 20 26 26 C 1.52993 * 109.47261 * 299.99618 * 23 22 20 27 27 C 1.41336 * 118.84894 * 0.27774 * 5 4 3 28 28 C 1.35161 * 119.71265 * 359.41546 * 27 5 4 29 29 N 1.35590 * 120.96691 * 0.61989 * 28 27 5 30 30 H 0.96994 * 119.39142 * 179.68388 * 29 28 27 31 31 H 4.50555 * 14.04080 * 0.02562 * 4 2 1 32 32 H 1.07996 * 120.47694 * 0.05028 * 4 3 2 33 33 H 0.97003 * 120.00499 * 180.02562 * 14 13 11 34 34 H 0.96995 * 120.00157 * 29.58179 * 19 9 7 35 35 H 1.09005 * 109.47042 * 59.99761 * 24 23 22 36 36 H 1.08995 * 109.46985 * 179.97438 * 24 23 22 37 37 H 1.08995 * 109.47089 * 300.00002 * 24 23 22 38 38 H 1.08998 * 109.47428 * 60.00390 * 25 23 22 39 39 H 1.09007 * 109.46651 * 180.02562 * 25 23 22 40 40 H 1.08996 * 109.47455 * 299.99731 * 25 23 22 41 41 H 1.09007 * 109.47238 * 60.00037 * 26 23 22 42 42 H 1.09002 * 109.47469 * 180.02562 * 26 23 22 43 43 H 1.09007 * 109.47625 * 300.00324 * 26 23 22 44 44 H 1.07999 * 120.13885 * 179.72919 * 27 5 4 45 45 H 1.07995 * 119.51690 * 180.31957 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2938 0.1379 1.1885 5 6 4.7007 0.1367 1.1676 6 7 5.4035 0.2682 2.3103 7 6 6.7208 0.3775 2.2676 8 8 7.2373 1.2569 1.6031 9 6 7.5823 -0.5867 3.0415 10 1 7.3910 -1.6027 2.6961 11 6 7.2561 -0.4852 4.5092 12 1 7.4670 0.4270 5.0475 13 6 6.6883 -1.5571 5.1650 14 7 6.3248 -1.4405 6.4234 15 14 6.4356 -3.1748 4.2657 16 1 7.5954 -4.0675 4.5175 17 1 5.1944 -3.8255 4.7569 18 1 6.3162 -2.9175 2.8081 19 7 8.9942 -0.2568 2.8316 20 6 9.9280 -1.2274 2.8839 21 8 9.5989 -2.3758 3.1056 22 8 11.2256 -0.9240 2.6915 23 6 12.1761 -2.0195 2.7626 24 6 11.8347 -3.0610 1.6952 25 6 13.5891 -1.4849 2.5209 26 6 12.1061 -2.6664 4.1473 27 6 5.3642 0.0006 -0.0729 28 6 4.6422 -0.1369 -1.2072 29 7 3.2866 -0.1340 -1.1761 30 1 2.7913 -0.2297 -2.0045 31 1 -1.0500 -0.0005 -0.0001 32 1 2.7598 0.2444 2.1212 33 1 5.9257 -2.1946 6.8849 34 1 9.2570 0.6600 2.6550 35 1 11.8846 -2.6001 0.7087 36 1 12.5484 -3.8830 1.7483 37 1 10.8281 -3.4417 1.8678 38 1 13.8321 -0.7431 3.2817 39 1 14.3026 -2.3073 2.5738 40 1 13.6394 -1.0237 1.5346 41 1 11.0993 -3.0471 4.3201 42 1 12.8199 -3.4884 4.2009 43 1 12.3493 -1.9243 4.9079 44 1 6.4434 0.0014 -0.1136 45 1 5.1524 -0.2459 -2.1528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180779518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:55 Heat of formation + Delta-G solvation = -21.011292 kcal Electronic energy + Delta-G solvation = -30200.491396 eV Core-core repulsion = 25992.211882 eV Total energy + Delta-G solvation = -4208.279514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91862 -41.63259 -40.34658 -38.21286 -36.26039 -35.76340 -35.07493 -34.97218 -34.18226 -32.10744 -31.82424 -30.09111 -28.32626 -28.24492 -26.18394 -25.30999 -24.47400 -23.00784 -21.51518 -21.06736 -20.22130 -19.66317 -19.19262 -18.83056 -17.91107 -17.68865 -17.24587 -17.03304 -16.58117 -16.51509 -16.24223 -15.79138 -15.70012 -15.33227 -15.25352 -14.98850 -14.71624 -14.49434 -14.21207 -14.02286 -13.35781 -13.27097 -13.21338 -13.03856 -12.95336 -12.82230 -12.78599 -12.66739 -12.50475 -12.30820 -12.23062 -11.93783 -11.91041 -11.81630 -11.30851 -11.29669 -10.96777 -10.82750 -10.27244 -10.16325 -9.81001 -8.58298 -8.43015 -6.49113 -0.50326 0.09931 1.16821 1.23365 1.27567 1.35804 1.38527 1.44730 1.95773 2.00848 2.08736 2.26607 2.70330 2.92316 3.05941 3.29631 3.66768 3.77114 3.82601 3.85268 3.91082 4.00035 4.08715 4.32879 4.38740 4.47743 4.59675 4.64003 4.78576 4.80050 4.84089 4.85595 4.91405 5.01741 5.11198 5.14620 5.25836 5.34230 5.34689 5.46747 5.54831 5.63485 5.69056 6.07014 6.12980 6.34264 6.44196 6.63276 6.68439 7.17640 7.49250 7.60340 8.72916 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003318 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.843316 B = 8437.018603 C = 9553.280659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.244 4.244 3 C 0.296 3.704 4 C -0.196 4.196 5 C 0.287 3.713 6 N -0.667 5.667 7 C 0.513 3.487 8 O -0.584 6.584 9 C 0.229 3.771 10 H 0.080 0.920 11 C -0.507 4.507 12 H 0.033 0.967 13 C 0.050 3.950 14 N -0.923 5.923 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.274 1.274 18 H -0.263 1.263 19 N -0.690 5.690 20 C 0.649 3.351 21 O -0.595 6.595 22 O -0.374 6.374 23 C 0.117 3.883 24 C -0.176 4.176 25 C -0.129 4.129 26 C -0.181 4.181 27 C -0.293 4.293 28 C 0.196 3.804 29 N -0.552 5.552 30 H 0.448 0.552 31 H 0.278 0.722 32 H 0.144 0.856 33 H 0.272 0.728 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.126 0.874 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -2.367 -23.736 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.245 4.245 3 C 0.183 3.817 4 C -0.222 4.222 5 C 0.135 3.865 6 N -0.407 5.407 7 C 0.302 3.698 8 O -0.467 6.467 9 C 0.125 3.875 10 H 0.097 0.903 11 C -0.545 4.545 12 H 0.051 0.949 13 C -0.152 4.152 14 N -0.561 5.561 15 Si 0.775 3.225 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.188 1.188 19 N -0.348 5.348 20 C 0.402 3.598 21 O -0.487 6.487 22 O -0.289 6.289 23 C 0.081 3.919 24 C -0.233 4.233 25 C -0.186 4.186 26 C -0.238 4.238 27 C -0.320 4.320 28 C 0.064 3.936 29 N -0.157 5.157 30 H 0.290 0.710 31 H 0.293 0.707 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.144 0.856 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.261 -2.531 -22.902 23.877 hybrid contribution 0.288 -0.060 0.167 0.338 sum -5.973 -2.591 -22.735 23.649 Atomic orbital electron populations 1.26154 0.96254 0.91477 0.91885 1.19093 0.90643 1.07167 1.07645 1.15708 0.86606 0.93781 0.85556 1.20914 0.91263 1.11775 0.98277 1.19240 0.93767 0.85364 0.88090 1.68201 1.07319 1.38315 1.26838 1.21590 0.87814 0.84067 0.76300 1.90564 1.77712 1.35962 1.42476 1.19075 0.76962 0.95992 0.95511 0.90306 1.20749 1.41352 1.00280 0.92132 0.94909 1.25622 0.92886 1.01451 0.95198 1.69991 1.41581 1.32874 1.11688 0.85705 0.77414 0.80106 0.79228 1.20009 1.19923 1.18850 1.45274 1.05966 1.10123 1.73443 1.18106 0.81019 0.84357 0.76311 1.90789 1.81908 1.20138 1.55870 1.86303 1.15077 1.42350 1.85164 1.22495 0.88013 0.85025 0.96343 1.22442 1.03646 0.99311 0.97919 1.21851 0.90453 1.03032 1.03254 1.22471 1.03625 1.01851 0.95828 1.21683 1.01740 1.15577 0.93023 1.22370 0.81399 0.88993 1.00862 1.41383 1.06054 1.59022 1.09291 0.70979 0.70666 0.83787 0.91901 0.76547 0.91572 0.88427 0.92781 0.91665 0.87300 0.90876 0.93175 0.88297 0.92749 0.85643 0.74873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.25 19.25 74.32 1.43 1.18 16 2 C -0.24 -3.24 13.36 30.01 0.40 -2.84 16 3 C 0.30 5.52 6.66 39.60 0.26 5.78 16 4 C -0.20 -6.01 9.73 22.82 0.22 -5.79 16 5 C 0.29 11.34 6.54 40.05 0.26 11.61 16 6 N -0.67 -35.06 10.30 -306.58 -3.16 -38.22 16 7 C 0.51 28.43 5.65 88.04 0.50 28.93 16 8 O -0.58 -31.89 15.17 -4.44 -0.07 -31.96 16 9 C 0.23 13.27 2.47 43.50 0.11 13.38 16 10 H 0.08 4.71 3.60 -2.39 -0.01 4.70 16 11 C -0.51 -33.36 9.06 25.60 0.23 -33.13 16 12 H 0.03 2.38 8.06 -2.91 -0.02 2.36 16 13 C 0.05 3.27 5.47 84.66 0.46 3.73 16 14 N -0.92 -61.93 13.96 21.45 0.30 -61.63 16 15 Si 0.95 52.83 26.69 68.60 1.83 54.67 16 16 H -0.27 -15.45 7.11 99.48 0.71 -14.74 16 17 H -0.27 -14.13 7.11 99.48 0.71 -13.42 16 18 H -0.26 -14.26 5.98 99.48 0.59 -13.66 16 19 N -0.69 -36.46 4.86 -577.36 -2.81 -39.26 16 20 C 0.65 32.38 8.05 129.79 1.05 33.42 16 21 O -0.60 -31.92 10.60 19.83 0.21 -31.71 16 22 O -0.37 -15.61 9.94 -55.49 -0.55 -16.16 16 23 C 0.12 3.83 1.13 -10.80 -0.01 3.82 16 24 C -0.18 -5.31 8.37 71.98 0.60 -4.70 16 25 C -0.13 -2.90 8.85 71.98 0.64 -2.27 16 26 C -0.18 -6.19 8.37 71.98 0.60 -5.58 16 27 C -0.29 -8.97 8.90 22.32 0.20 -8.77 16 28 C 0.20 2.78 11.16 83.40 0.93 3.71 16 29 N -0.55 -5.80 5.28 -187.48 -0.99 -6.79 16 30 H 0.45 0.18 8.76 -92.71 -0.81 -0.63 16 31 H 0.28 -1.08 7.80 -4.42 -0.03 -1.11 16 32 H 0.14 4.67 8.06 -2.91 -0.02 4.64 16 33 H 0.27 16.86 8.31 -92.71 -0.77 16.09 16 34 H 0.40 20.07 8.02 -92.71 -0.74 19.32 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.05 5.88 -2.39 -0.01 2.04 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 2.18 5.88 -2.38 -0.01 2.16 16 42 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.13 4.53 6.41 -2.91 -0.02 4.51 16 45 H 0.24 0.50 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -104.79 385.85 2.03 -102.75 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.61 Total: 25.82 kcal Atomic # 6 Polarization: 34.62 SS G_CDS: 7.88 Total: 42.50 kcal Atomic # 7 Polarization: -139.25 SS G_CDS: -6.66 Total: -145.91 kcal Atomic # 8 Polarization: -79.43 SS G_CDS: -0.41 Total: -79.84 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 1.83 Total: 54.67 kcal Total: -104.79 2.03 -102.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180779518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.742 kcal (2) G-P(sol) polarization free energy of solvation -104.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds