Wall clock time and date at job start Wed Apr 1 2020 03:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53010 * 109.46933 * 2 1 4 4 H 1.08997 * 109.46789 * 305.00164 * 3 2 1 5 5 S 1.81400 * 109.46739 * 65.00064 * 3 2 1 6 6 C 1.81398 * 102.99801 * 184.99823 * 5 3 2 7 7 C 1.50693 * 109.46933 * 184.99963 * 3 2 1 8 8 O 1.21285 * 120.00527 * 330.00167 * 7 3 2 9 9 N 1.34781 * 119.99642 * 149.99982 * 7 3 2 10 10 C 1.46504 * 119.99640 * 179.97438 * 9 7 3 11 11 H 1.09002 * 110.62954 * 34.30156 * 10 9 7 12 12 C 1.54312 * 110.70639 * 271.19566 * 10 9 7 13 13 N 1.47443 * 107.23612 * 219.16284 * 12 10 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 10 15 15 C 1.50705 * 109.47371 * 169.99402 * 14 13 12 16 16 O 1.21295 * 119.99535 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99878 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99645 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00138 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00186 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99580 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00436 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47017 * 90.00114 * 22 20 18 24 24 H 1.48502 * 109.47374 * 209.99479 * 22 20 18 25 25 H 1.48497 * 109.47080 * 330.00029 * 22 20 18 26 26 C 1.47844 * 108.56494 * 359.01050 * 13 12 10 27 27 C 1.55142 * 110.70134 * 157.40675 * 10 9 7 28 28 H 1.08996 * 110.99420 * 36.12042 * 27 10 9 29 29 O 1.42900 * 110.98837 * 272.29776 * 27 10 9 30 30 H 1.08990 * 109.47283 * 60.00172 * 1 2 3 31 31 H 1.09006 * 109.46534 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46681 * 299.99932 * 1 2 3 33 33 H 1.09000 * 109.47170 * 240.00251 * 2 1 3 34 34 H 1.09004 * 109.47276 * 120.00089 * 2 1 3 35 35 H 1.09004 * 109.47612 * 300.00088 * 6 5 3 36 36 H 1.09006 * 109.46999 * 60.00026 * 6 5 3 37 37 H 1.08995 * 109.47475 * 179.97438 * 6 5 3 38 38 H 0.96991 * 119.99819 * 0.02562 * 9 7 3 39 39 H 1.08997 * 109.89327 * 338.56561 * 12 10 9 40 40 H 1.09001 * 109.89155 * 99.59376 * 12 10 9 41 41 H 1.08999 * 109.47331 * 289.99741 * 14 13 12 42 42 H 1.09000 * 109.47057 * 50.00009 * 14 13 12 43 43 H 0.96992 * 120.00176 * 0.02562 * 17 15 14 44 44 H 0.97007 * 119.99526 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.37744 * 142.93014 * 26 13 12 46 46 H 1.09007 * 110.37325 * 265.15824 * 26 13 12 47 47 H 0.96701 * 113.99616 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 16 1.5601 2.2535 1.5501 6 6 2.1077 3.9649 1.3018 7 6 3.5419 1.4444 -0.1238 8 8 4.1884 0.5207 0.3231 9 7 4.1667 2.4726 -0.7312 10 6 5.6268 2.4747 -0.8511 11 1 6.0023 1.4606 -0.9881 12 6 6.2748 3.1341 0.3844 13 7 7.4140 3.9374 -0.0962 14 6 8.6621 3.5265 0.5605 15 6 9.8309 4.1882 -0.1231 16 8 9.6425 4.9295 -1.0645 17 7 11.0853 3.9570 0.3122 18 6 12.1485 4.5594 -0.3093 19 1 11.9808 5.2195 -1.1476 20 6 13.4417 4.3207 0.1390 21 7 13.6457 3.5179 1.1593 22 14 14.8905 5.1408 -0.7083 23 1 15.1713 6.4454 -0.0567 24 1 16.0862 4.2667 -0.6014 25 1 14.5657 5.3625 -2.1403 26 6 7.5121 3.7845 -1.5634 27 6 6.0799 3.3899 -2.0190 28 1 5.4392 4.2681 -2.0982 29 8 6.1110 2.6685 -3.2522 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.1850 3.9815 1.1364 36 1 1.6004 4.3864 0.4339 37 1 1.8663 4.5555 2.1855 38 1 3.6497 3.2115 -1.0883 39 1 5.5510 3.7786 0.8832 40 1 6.6244 2.3660 1.0742 41 1 8.6370 3.8258 1.6083 42 1 8.7681 2.4437 0.4944 43 1 11.2359 3.3645 1.0652 44 1 14.5487 3.3509 1.4721 45 1 7.8104 4.7262 -2.0241 46 1 8.2226 2.9974 -1.8163 47 1 6.3889 3.1991 -4.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192256250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:34 Heat of formation + Delta-G solvation = -111.751330 kcal Electronic energy + Delta-G solvation = -28566.934499 eV Core-core repulsion = 24490.164153 eV Total energy + Delta-G solvation = -4076.770346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48032 -39.21862 -37.84086 -35.85075 -34.90849 -34.61696 -33.86647 -31.36423 -30.55030 -29.37295 -28.54378 -27.71324 -26.31512 -24.26642 -22.58294 -21.56771 -21.08563 -20.62839 -19.30683 -18.02130 -17.76072 -17.56230 -17.06092 -16.58124 -15.99949 -15.48337 -15.18734 -15.05027 -14.81822 -14.62692 -14.33274 -14.08842 -13.90470 -13.85662 -13.77345 -13.30256 -13.12795 -12.96388 -12.88498 -12.54011 -12.42900 -12.21110 -12.08402 -11.89413 -11.60578 -11.57933 -11.39084 -11.34521 -11.04204 -10.71251 -10.59885 -10.42339 -10.26791 -10.23724 -9.98545 -9.54599 -9.44857 -8.42869 -8.08346 -8.04605 -7.96446 -6.46078 -3.87402 0.97461 1.89598 2.59948 2.76968 3.14493 3.23742 3.28898 3.70771 3.83748 4.09353 4.12636 4.21698 4.29997 4.47511 4.61068 4.72638 4.76529 4.78899 4.89346 4.95381 5.05015 5.07264 5.20025 5.24157 5.29295 5.33425 5.36417 5.59057 5.62007 5.73969 5.75037 5.82318 5.87818 5.93395 6.08433 6.18511 6.21273 6.43496 7.06112 7.09821 7.15347 7.49605 7.50731 7.87342 8.00150 8.55258 9.12308 9.48100 9.98555 10.71352 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.002098 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.658362 B =13342.147219 C =13619.696608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.081 4.081 4 H 0.105 0.895 5 S -0.205 6.205 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.517 6.517 9 N -0.716 5.716 10 C 0.133 3.867 11 H 0.105 0.895 12 C 0.034 3.966 13 N -0.502 5.502 14 C 0.038 3.962 15 C 0.440 3.560 16 O -0.585 6.585 17 N -0.559 5.559 18 C -0.301 4.301 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.899 5.899 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.034 3.966 27 C 0.080 3.920 28 H 0.074 0.926 29 O -0.559 6.559 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.398 0.602 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.393 0.607 44 H 0.272 0.728 45 H 0.111 0.889 46 H 0.056 0.944 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.471 -2.625 -2.487 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.131 4.131 3 C -0.213 4.213 4 H 0.123 0.877 5 S 0.021 5.979 6 C -0.308 4.308 7 C 0.301 3.699 8 O -0.392 6.392 9 N -0.368 5.368 10 C 0.027 3.973 11 H 0.123 0.877 12 C -0.096 4.096 13 N -0.227 5.227 14 C -0.094 4.094 15 C 0.226 3.774 16 O -0.470 6.470 17 N -0.195 5.195 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.094 4.094 27 C 0.019 3.981 28 H 0.092 0.908 29 O -0.364 6.364 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.233 0.767 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.075 0.925 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -25.716 -3.266 -1.295 25.954 hybrid contribution 1.678 0.641 -1.542 2.368 sum -24.037 -2.624 -2.837 24.346 Atomic orbital electron populations 1.21851 0.94345 1.02276 1.02663 1.21209 0.96450 0.91060 1.04376 1.23464 0.95046 1.02976 0.99793 0.87685 1.87083 1.78781 1.07987 1.24044 1.23628 1.04987 0.95566 1.06618 1.20402 0.89375 0.82282 0.77835 1.90737 1.66824 1.35012 1.46657 1.45975 1.07442 1.23494 1.59918 1.22190 0.79404 1.01479 0.94252 0.87716 1.23264 0.94094 0.96028 0.96203 1.63424 1.02475 1.51885 1.04922 1.22188 0.89503 0.98089 0.99599 1.19681 0.83829 0.86712 0.87216 1.90469 1.84531 1.41135 1.30882 1.41852 1.04493 1.42325 1.30819 1.19690 0.84129 1.25057 1.14131 0.87862 1.25291 0.98987 0.97094 0.96559 1.69620 1.22941 1.36131 1.25300 0.85843 0.79993 0.78734 0.79622 1.20352 1.20896 1.19426 1.23772 0.93717 1.03635 0.88260 1.23409 0.97563 0.93007 0.84076 0.90796 1.86472 1.91021 1.41321 1.17594 0.92566 0.92035 0.91380 0.90229 0.89758 0.89867 0.90139 0.87431 0.76746 0.90121 0.91414 0.88917 0.93005 0.77372 0.91772 0.87121 0.92526 0.76802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.74 37.16 0.36 -0.61 16 2 C -0.09 -0.77 4.91 -26.72 -0.13 -0.90 16 3 C -0.08 -0.68 2.62 -27.88 -0.07 -0.75 16 4 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 5 S -0.21 -1.76 20.59 -107.50 -2.21 -3.97 16 6 C -0.14 -0.87 10.54 101.05 1.07 0.19 16 7 C 0.52 5.84 6.55 -10.99 -0.07 5.77 16 8 O -0.52 -7.97 15.96 5.55 0.09 -7.88 16 9 N -0.72 -7.02 4.47 -52.04 -0.23 -7.25 16 10 C 0.13 1.65 2.99 -66.11 -0.20 1.45 16 11 H 0.10 1.59 7.62 -51.93 -0.40 1.19 16 12 C 0.03 0.45 6.62 -2.84 -0.02 0.43 16 13 N -0.50 -8.09 5.21 -232.37 -1.21 -9.30 16 14 C 0.04 0.68 5.32 -4.97 -0.03 0.65 16 15 C 0.44 10.14 7.31 -10.98 -0.08 10.06 16 16 O -0.58 -14.92 13.13 5.54 0.07 -14.84 16 17 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 18 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 22 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.03 0.55 4.71 -2.04 -0.01 0.54 16 27 C 0.08 0.96 4.06 -24.33 -0.10 0.86 16 28 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 29 O -0.56 -6.62 13.48 -35.23 -0.47 -7.10 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.46 7.13 -51.93 -0.37 0.09 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.84 8.02 -51.93 -0.42 0.43 16 35 H 0.08 0.58 7.32 -51.92 -0.38 0.20 16 36 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.40 2.81 8.54 -40.82 -0.35 2.46 16 39 H 0.08 0.97 7.98 -51.93 -0.41 0.55 16 40 H 0.07 0.94 7.50 -51.93 -0.39 0.56 16 41 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.05 0.88 7.96 -51.93 -0.41 0.47 16 43 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.11 1.98 6.71 -51.93 -0.35 1.63 16 46 H 0.06 1.03 7.53 -51.93 -0.39 0.64 16 47 H 0.38 3.07 9.12 45.56 0.42 3.49 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -33.18 396.40 -8.54 -41.72 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -6.66 Total: 14.75 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 0.48 Total: 9.79 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.78 Total: -54.25 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.31 Total: -29.83 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.18 -8.54 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192256250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.032 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds