Wall clock time and date at job start Wed Apr 1 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53010 * 109.46933 * 2 1 4 4 H 1.08997 * 109.46789 * 305.00164 * 3 2 1 5 5 S 1.81400 * 109.46739 * 65.00064 * 3 2 1 6 6 C 1.81398 * 102.99801 * 184.99823 * 5 3 2 7 7 C 1.50693 * 109.46933 * 184.99963 * 3 2 1 8 8 O 1.21285 * 120.00527 * 330.00167 * 7 3 2 9 9 N 1.34781 * 119.99642 * 149.99982 * 7 3 2 10 10 C 1.46504 * 119.99640 * 179.97438 * 9 7 3 11 11 H 1.09002 * 110.62954 * 34.30156 * 10 9 7 12 12 C 1.54312 * 110.70639 * 271.19566 * 10 9 7 13 13 N 1.47443 * 107.23612 * 219.16284 * 12 10 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 10 15 15 C 1.50705 * 109.47371 * 169.99402 * 14 13 12 16 16 O 1.21295 * 119.99535 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99878 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99645 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00138 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00186 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99580 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00436 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47017 * 90.00114 * 22 20 18 24 24 H 1.48502 * 109.47374 * 209.99479 * 22 20 18 25 25 H 1.48497 * 109.47080 * 330.00029 * 22 20 18 26 26 C 1.47844 * 108.56494 * 359.01050 * 13 12 10 27 27 C 1.55142 * 110.70134 * 157.40675 * 10 9 7 28 28 H 1.08996 * 110.99420 * 36.12042 * 27 10 9 29 29 O 1.42900 * 110.98837 * 272.29776 * 27 10 9 30 30 H 1.08990 * 109.47283 * 60.00172 * 1 2 3 31 31 H 1.09006 * 109.46534 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46681 * 299.99932 * 1 2 3 33 33 H 1.09000 * 109.47170 * 240.00251 * 2 1 3 34 34 H 1.09004 * 109.47276 * 120.00089 * 2 1 3 35 35 H 1.09004 * 109.47612 * 300.00088 * 6 5 3 36 36 H 1.09006 * 109.46999 * 60.00026 * 6 5 3 37 37 H 1.08995 * 109.47475 * 179.97438 * 6 5 3 38 38 H 0.96991 * 119.99819 * 0.02562 * 9 7 3 39 39 H 1.08997 * 109.89327 * 338.56561 * 12 10 9 40 40 H 1.09001 * 109.89155 * 99.59376 * 12 10 9 41 41 H 1.08999 * 109.47331 * 289.99741 * 14 13 12 42 42 H 1.09000 * 109.47057 * 50.00009 * 14 13 12 43 43 H 0.96992 * 120.00176 * 0.02562 * 17 15 14 44 44 H 0.97007 * 119.99526 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.37744 * 142.93014 * 26 13 12 46 46 H 1.09007 * 110.37325 * 265.15824 * 26 13 12 47 47 H 0.96701 * 113.99616 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 16 1.5601 2.2535 1.5501 6 6 2.1077 3.9649 1.3018 7 6 3.5419 1.4444 -0.1238 8 8 4.1884 0.5207 0.3231 9 7 4.1667 2.4726 -0.7312 10 6 5.6268 2.4747 -0.8511 11 1 6.0023 1.4606 -0.9881 12 6 6.2748 3.1341 0.3844 13 7 7.4140 3.9374 -0.0962 14 6 8.6621 3.5265 0.5605 15 6 9.8309 4.1882 -0.1231 16 8 9.6425 4.9295 -1.0645 17 7 11.0853 3.9570 0.3122 18 6 12.1485 4.5594 -0.3093 19 1 11.9808 5.2195 -1.1476 20 6 13.4417 4.3207 0.1390 21 7 13.6457 3.5179 1.1593 22 14 14.8905 5.1408 -0.7083 23 1 15.1713 6.4454 -0.0567 24 1 16.0862 4.2667 -0.6014 25 1 14.5657 5.3625 -2.1403 26 6 7.5121 3.7845 -1.5634 27 6 6.0799 3.3899 -2.0190 28 1 5.4392 4.2681 -2.0982 29 8 6.1110 2.6685 -3.2522 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.1850 3.9815 1.1364 36 1 1.6004 4.3864 0.4339 37 1 1.8663 4.5555 2.1855 38 1 3.6497 3.2115 -1.0883 39 1 5.5510 3.7786 0.8832 40 1 6.6244 2.3660 1.0742 41 1 8.6370 3.8258 1.6083 42 1 8.7681 2.4437 0.4944 43 1 11.2359 3.3645 1.0652 44 1 14.5487 3.3509 1.4721 45 1 7.8104 4.7262 -2.0241 46 1 8.2226 2.9974 -1.8163 47 1 6.3889 3.1991 -4.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192256250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:33 Heat of formation + Delta-G solvation = -139.930025 kcal Electronic energy + Delta-G solvation = -28568.156419 eV Core-core repulsion = 24490.164153 eV Total energy + Delta-G solvation = -4077.992266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53131 -40.56008 -39.35501 -36.97402 -36.06270 -35.54414 -35.47196 -33.34621 -31.70476 -30.07307 -29.42026 -28.70966 -27.74992 -25.99443 -23.34497 -22.73929 -22.02269 -21.62978 -21.09019 -19.90547 -18.80956 -18.47222 -17.96656 -17.71971 -17.37318 -16.74508 -16.29259 -16.27367 -16.12813 -15.90938 -15.65767 -15.33538 -15.11196 -14.65375 -14.46842 -14.37165 -14.28161 -14.16041 -13.80197 -13.78253 -13.52609 -13.41074 -13.13199 -13.09330 -12.98179 -12.79910 -12.62962 -12.43977 -12.17422 -12.13819 -11.97924 -11.81720 -11.52117 -11.41892 -11.13573 -10.83082 -10.44877 -10.20625 -10.03745 -9.35946 -8.72827 -8.48846 -5.97970 0.31981 1.28808 1.36490 1.40678 1.53447 1.75197 1.95237 1.99610 2.26061 2.58906 3.05365 3.17341 3.20733 3.39243 3.52341 3.60072 3.78837 3.88733 4.01807 4.15132 4.20975 4.25216 4.30764 4.34190 4.37038 4.38091 4.45596 4.48791 4.58637 4.75341 4.79492 4.81602 4.94234 5.06770 5.09442 5.16812 5.27034 5.38854 5.41564 5.70562 5.84600 6.00405 6.31714 6.55765 6.72368 7.04152 7.08960 7.51115 8.04997 8.68536 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.002098 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.658362 B =13342.147219 C =13619.696608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.070 4.070 4 H 0.136 0.864 5 S -0.238 6.238 6 C -0.133 4.133 7 C 0.517 3.483 8 O -0.565 6.565 9 N -0.699 5.699 10 C 0.139 3.861 11 H 0.076 0.924 12 C 0.038 3.962 13 N -0.507 5.507 14 C 0.047 3.953 15 C 0.440 3.560 16 O -0.611 6.611 17 N -0.572 5.572 18 C -0.331 4.331 19 H 0.083 0.917 20 C -0.016 4.016 21 N -0.921 5.921 22 Si 0.995 3.005 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.271 1.271 26 C 0.036 3.964 27 C 0.100 3.900 28 H 0.107 0.893 29 O -0.570 6.570 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.089 0.911 46 H 0.026 0.974 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.282 -1.604 -3.023 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.202 4.202 4 H 0.154 0.846 5 S -0.012 6.012 6 C -0.301 4.301 7 C 0.301 3.699 8 O -0.443 6.443 9 N -0.353 5.353 10 C 0.032 3.968 11 H 0.094 0.906 12 C -0.090 4.090 13 N -0.232 5.232 14 C -0.084 4.084 15 C 0.227 3.773 16 O -0.497 6.497 17 N -0.209 5.209 18 C -0.461 4.461 19 H 0.101 0.899 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.198 1.198 25 H -0.195 1.195 26 C -0.093 4.093 27 C 0.039 3.961 28 H 0.125 0.875 29 O -0.378 6.378 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.254 0.746 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -27.567 -2.219 -1.844 27.718 hybrid contribution 2.189 0.330 -1.384 2.611 sum -25.378 -1.890 -3.228 25.652 Atomic orbital electron populations 1.21797 0.92594 1.02830 1.03167 1.21200 0.97880 0.90973 1.03115 1.23441 0.92578 1.03385 1.00757 0.84567 1.87279 1.78713 1.10321 1.24847 1.23703 1.04711 0.93546 1.08137 1.20966 0.90571 0.81555 0.76792 1.90724 1.68066 1.36832 1.48651 1.45776 1.06288 1.23833 1.59354 1.21883 0.80906 0.99853 0.94117 0.90629 1.23287 0.93335 0.95956 0.96464 1.63429 1.02249 1.52626 1.04938 1.22089 0.88293 0.98007 1.00011 1.20558 0.84449 0.85735 0.86535 1.90455 1.85128 1.42150 1.31986 1.41934 1.04916 1.42834 1.31180 1.19678 0.85611 1.26161 1.14623 0.89894 1.26100 1.01001 0.97385 0.97035 1.69689 1.23797 1.36691 1.26015 0.84894 0.76808 0.78062 0.78376 1.19559 1.19755 1.19546 1.23620 0.95877 1.01440 0.88331 1.23238 0.95101 0.93746 0.83983 0.87535 1.86446 1.90925 1.42284 1.18100 0.91030 0.91547 0.91778 0.90478 0.92144 0.90441 0.87706 0.86694 0.74614 0.88008 0.92142 0.86994 0.92063 0.77141 0.91302 0.89326 0.95593 0.74805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.74 71.98 0.70 -0.90 16 2 C -0.09 -1.46 4.91 30.60 0.15 -1.31 16 3 C -0.07 -1.03 2.62 29.85 0.08 -0.96 16 4 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 5 S -0.24 -3.65 20.59 -56.49 -1.16 -4.81 16 6 C -0.13 -1.25 10.54 113.37 1.20 -0.06 16 7 C 0.52 10.95 6.55 87.65 0.57 11.52 16 8 O -0.56 -17.47 15.96 -3.05 -0.05 -17.52 16 9 N -0.70 -12.09 4.47 -436.95 -1.95 -14.05 16 10 C 0.14 3.29 2.99 46.17 0.14 3.43 16 11 H 0.08 2.30 7.62 -2.39 -0.02 2.28 16 12 C 0.04 0.97 6.62 86.64 0.57 1.54 16 13 N -0.51 -15.98 5.21 -889.10 -4.63 -20.61 16 14 C 0.05 1.69 5.32 85.56 0.45 2.15 16 15 C 0.44 20.72 7.31 87.66 0.64 21.36 16 16 O -0.61 -32.00 13.13 -3.08 -0.04 -32.04 16 17 N -0.57 -29.42 5.29 -306.98 -1.62 -31.05 16 18 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 19 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 20 C -0.02 -0.83 5.50 84.92 0.47 -0.36 16 21 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 22 Si 1.00 42.74 29.55 68.60 2.03 44.77 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.04 1.14 4.71 86.94 0.41 1.55 16 27 C 0.10 2.22 4.06 32.15 0.13 2.35 16 28 H 0.11 1.75 8.01 -2.39 -0.02 1.73 16 29 O -0.57 -12.60 13.48 -148.98 -2.01 -14.60 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.77 7.13 -2.39 -0.02 0.75 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.23 8.02 -2.38 -0.02 1.21 16 35 H 0.08 0.84 7.32 -2.39 -0.02 0.82 16 36 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.42 4.30 8.54 -92.71 -0.79 3.51 16 39 H 0.10 2.17 7.98 -2.39 -0.02 2.15 16 40 H 0.06 1.64 7.50 -2.39 -0.02 1.62 16 41 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.06 2.09 7.96 -2.39 -0.02 2.07 16 43 H 0.39 19.60 7.90 -92.71 -0.73 18.87 16 44 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 45 H 0.09 3.22 6.71 -2.39 -0.02 3.20 16 46 H 0.03 0.97 7.53 -2.38 -0.02 0.95 16 47 H 0.40 5.72 9.12 -74.06 -0.68 5.05 16 Total: -1.00 -74.10 396.40 -4.02 -78.12 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -1.19 Total: 39.11 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.33 Total: 22.49 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -7.92 Total: -115.50 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -2.10 Total: -64.17 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.16 Total: -4.81 kcal Total: -74.10 -4.02 -78.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192256250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.813 kcal (2) G-P(sol) polarization free energy of solvation -74.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds