Wall clock time and date at job start Wed Apr 1 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46783 * 2 1 4 4 H 1.09001 * 109.46641 * 54.42113 * 3 2 1 5 5 S 1.81396 * 109.47297 * 294.41570 * 3 2 1 6 6 C 1.81397 * 102.99933 * 172.83652 * 5 3 2 7 7 C 1.50700 * 109.46936 * 174.41809 * 3 2 1 8 8 O 1.21282 * 120.00194 * 99.99666 * 7 3 2 9 9 N 1.34779 * 119.99958 * 280.00497 * 7 3 2 10 10 C 1.46500 * 119.99812 * 179.97438 * 9 7 3 11 11 H 1.08999 * 110.28890 * 34.29544 * 10 9 7 12 12 C 1.54375 * 110.32300 * 272.16718 * 10 9 7 13 13 N 1.48728 * 104.51683 * 217.32283 * 12 10 9 14 14 C 1.46898 * 111.01198 * 158.96875 * 13 12 10 15 15 C 1.50704 * 109.46531 * 174.61732 * 14 13 12 16 16 O 1.21292 * 120.00250 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99431 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99704 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99738 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99978 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47074 * 60.00066 * 22 20 18 24 24 H 1.48494 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47351 * 300.00352 * 22 20 18 26 26 C 1.48556 * 104.28782 * 39.36558 * 13 12 10 27 27 C 1.54266 * 110.32136 * 156.42412 * 10 9 7 28 28 H 1.09001 * 110.32641 * 359.97438 * 27 10 9 29 29 O 1.42902 * 110.31862 * 237.78934 * 27 10 9 30 30 H 1.08997 * 109.47317 * 295.28576 * 1 2 3 31 31 H 1.09003 * 109.47179 * 55.28429 * 1 2 3 32 32 H 1.09003 * 109.46990 * 175.27877 * 1 2 3 33 33 H 1.09005 * 109.47033 * 240.00228 * 2 1 3 34 34 H 1.08995 * 109.46952 * 119.99871 * 2 1 3 35 35 H 1.09001 * 109.47330 * 295.08958 * 6 5 3 36 36 H 1.09001 * 109.47133 * 55.09064 * 6 5 3 37 37 H 1.09003 * 109.47042 * 175.08620 * 6 5 3 38 38 H 0.96993 * 119.99927 * 359.97438 * 9 7 3 39 39 H 1.08995 * 110.41305 * 336.02973 * 12 10 9 40 40 H 1.08998 * 110.41494 * 98.47453 * 12 10 9 41 41 H 1.08997 * 109.47489 * 294.61452 * 14 13 12 42 42 H 1.08996 * 109.47265 * 54.61905 * 14 13 12 43 43 H 0.96991 * 120.00505 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99991 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.41388 * 201.79619 * 26 13 12 46 46 H 1.09001 * 110.51417 * 79.39857 * 26 13 12 47 47 H 0.96708 * 113.99189 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9843 0.8358 5 16 1.5750 2.2483 -1.5573 6 6 2.0600 3.9747 -1.2841 7 6 3.5406 1.4449 0.1382 8 8 4.2396 1.5945 -0.8416 9 7 4.1059 1.2805 1.3506 10 6 5.5648 1.2821 1.4848 11 1 6.0095 1.9723 0.7680 12 6 6.1240 -0.1416 1.2763 13 7 7.2428 -0.2490 2.2504 14 6 7.5566 -1.6548 2.5391 15 6 8.7752 -1.7260 3.4229 16 8 9.3280 -0.7061 3.7770 17 7 9.2506 -2.9231 3.8199 18 6 10.3595 -2.9880 4.6235 19 1 10.8523 -2.0799 4.9381 20 6 10.8500 -4.2220 5.0323 21 7 10.2508 -5.3269 4.6490 22 14 12.3605 -4.3104 6.1278 23 1 12.0924 -3.5918 7.3994 24 1 12.6774 -5.7314 6.4202 25 1 13.5120 -3.6782 5.4353 26 6 6.7399 0.4443 3.4642 27 6 5.9700 1.6679 2.9224 28 1 5.0836 1.8565 3.5281 29 8 6.8159 2.8196 2.9074 30 1 -0.3634 0.4389 0.9292 31 1 -0.3634 0.5853 -0.8447 32 1 -0.3633 -1.0242 -0.0846 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.4544 4.4001 -0.4838 36 1 3.1127 4.0165 -1.0045 37 1 1.9045 4.5451 -2.1999 38 1 3.5469 1.1611 2.1342 39 1 5.3584 -0.8863 1.4937 40 1 6.4923 -0.2599 0.2573 41 1 6.7115 -2.1188 3.0474 42 1 7.7534 -2.1822 1.6057 43 1 8.8088 -3.7387 3.5364 44 1 10.5934 -6.1885 4.9341 45 1 7.5720 0.7656 4.0906 46 1 6.0710 -0.2070 4.0267 47 1 7.1022 3.1087 3.7847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192256252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:38 Heat of formation + Delta-G solvation = -109.257915 kcal Electronic energy + Delta-G solvation = -28344.297235 eV Core-core repulsion = 24267.635012 eV Total energy + Delta-G solvation = -4076.662223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49720 -39.11162 -37.84293 -35.69771 -35.16250 -34.56563 -33.81645 -31.29656 -30.42140 -29.40527 -28.53153 -27.79746 -26.32217 -24.26699 -22.64776 -21.62865 -21.14805 -20.81361 -19.23450 -17.94662 -17.85750 -17.31308 -16.86562 -16.10428 -16.00820 -15.69811 -15.44231 -15.05902 -14.98692 -14.56016 -14.35103 -14.11965 -13.94909 -13.87335 -13.70213 -13.31153 -13.15754 -12.96160 -12.78515 -12.59213 -12.46756 -12.17169 -11.97683 -11.90622 -11.64532 -11.52292 -11.46969 -11.26569 -10.95808 -10.87333 -10.45773 -10.38934 -10.24051 -10.19660 -9.97220 -9.50441 -9.45216 -8.56022 -8.07753 -7.97055 -7.92505 -6.43247 -3.84206 1.17839 2.04190 2.29526 2.75612 3.18584 3.24532 3.28758 3.87244 3.95560 4.04263 4.17676 4.24953 4.25603 4.46751 4.50512 4.70769 4.80551 4.82568 4.84889 4.87553 4.95252 5.11499 5.17711 5.23126 5.24025 5.34121 5.42865 5.50676 5.55188 5.61419 5.67838 5.74523 5.82667 5.84295 5.91701 6.11576 6.21607 6.24342 6.96611 7.06474 7.10515 7.53326 7.59874 7.85556 8.03915 8.59866 9.16262 9.52306 10.04118 10.74446 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002046 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.139325 B =13682.422357 C =14458.479912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.099 4.099 3 C -0.087 4.087 4 H 0.106 0.894 5 S -0.193 6.193 6 C -0.132 4.132 7 C 0.511 3.489 8 O -0.507 6.507 9 N -0.719 5.719 10 C 0.148 3.852 11 H 0.113 0.887 12 C 0.024 3.976 13 N -0.475 5.475 14 C 0.034 3.966 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.007 3.993 27 C 0.099 3.901 28 H 0.063 0.937 29 O -0.551 6.551 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.109 0.891 46 H 0.046 0.954 47 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 12.366 -5.975 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.219 4.219 4 H 0.125 0.875 5 S 0.034 5.966 6 C -0.300 4.300 7 C 0.293 3.707 8 O -0.380 6.380 9 N -0.372 5.372 10 C 0.043 3.957 11 H 0.131 0.869 12 C -0.105 4.105 13 N -0.199 5.199 14 C -0.098 4.098 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.121 4.121 27 C 0.038 3.962 28 H 0.081 0.919 29 O -0.357 6.357 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.064 0.936 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -21.605 12.719 -8.181 26.372 hybrid contribution 0.172 -0.661 2.855 2.936 sum -21.433 12.058 -5.326 25.162 Atomic orbital electron populations 1.21859 0.93918 1.02558 1.02846 1.21297 0.97431 0.91126 1.03899 1.23627 0.95139 1.02476 1.00669 0.87550 1.86713 1.79700 1.06922 1.23290 1.23481 1.04966 0.95475 1.06099 1.20524 0.90131 0.76662 0.83397 1.90794 1.63298 1.47007 1.36944 1.46006 1.07268 1.74556 1.09406 1.21569 0.78905 0.97839 0.97434 0.86909 1.23575 0.92937 0.94964 0.99030 1.65164 1.33912 1.12727 1.08078 1.22094 0.97703 0.89419 1.00553 1.19657 0.87241 0.84628 0.85512 1.90504 1.61365 1.34234 1.59981 1.41854 1.27117 1.06366 1.44782 1.19641 1.04286 0.94162 1.24757 0.87971 1.25261 0.99433 0.94754 0.98513 1.69601 1.41099 0.97865 1.45787 0.85914 0.81208 0.77006 0.80070 1.19953 1.20984 1.19850 1.23911 0.99441 0.94902 0.93854 1.22652 0.92187 0.86425 0.94927 0.91917 1.86517 1.69171 1.45362 1.34659 0.92431 0.91103 0.91941 0.90167 0.90164 0.90637 0.90062 0.87865 0.76659 0.93435 0.89014 0.93245 0.89041 0.77511 0.91814 0.87302 0.93601 0.76878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.82 37.16 0.36 -0.48 16 2 C -0.10 -0.66 5.38 -26.73 -0.14 -0.80 16 3 C -0.09 -0.67 2.60 -27.88 -0.07 -0.74 16 4 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16 5 S -0.19 -1.79 19.79 -107.50 -2.13 -3.92 16 6 C -0.13 -1.01 10.61 101.05 1.07 0.07 16 7 C 0.51 5.36 6.66 -10.98 -0.07 5.29 16 8 O -0.51 -7.45 15.53 5.56 0.09 -7.36 16 9 N -0.72 -6.47 5.08 -52.46 -0.27 -6.74 16 10 C 0.15 1.80 3.19 -66.55 -0.21 1.58 16 11 H 0.11 1.69 7.44 -51.93 -0.39 1.31 16 12 C 0.02 0.33 6.22 -2.09 -0.01 0.32 16 13 N -0.47 -7.94 5.06 -231.27 -1.17 -9.11 16 14 C 0.03 0.61 5.30 -4.97 -0.03 0.58 16 15 C 0.44 10.41 7.58 -10.98 -0.08 10.33 16 16 O -0.58 -15.40 14.42 5.55 0.08 -15.32 16 17 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 22 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.01 0.11 5.54 -2.18 -0.01 0.10 16 27 C 0.10 1.14 4.19 -25.34 -0.11 1.03 16 28 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 29 O -0.55 -7.05 13.26 -35.23 -0.47 -7.52 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.44 7.01 -51.93 -0.36 0.08 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.08 0.75 7.77 -51.92 -0.40 0.35 16 37 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.40 2.37 8.33 -40.82 -0.34 2.03 16 39 H 0.05 0.57 7.91 -51.93 -0.41 0.16 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 42 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 43 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.11 1.90 6.85 -51.93 -0.36 1.55 16 46 H 0.05 0.61 7.83 -51.93 -0.41 0.21 16 47 H 0.38 3.42 9.12 45.56 0.42 3.83 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -34.72 399.04 -8.45 -43.17 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -6.70 Total: 13.48 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.45 Total: 9.33 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.77 Total: -53.81 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.30 Total: -30.20 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.13 Total: -3.92 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.72 -8.45 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192256252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.087 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds