Wall clock time and date at job start Wed Apr 1 2020 03:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46783 * 2 1 4 4 H 1.09001 * 109.46641 * 54.42113 * 3 2 1 5 5 S 1.81396 * 109.47297 * 294.41570 * 3 2 1 6 6 C 1.81397 * 102.99933 * 172.83652 * 5 3 2 7 7 C 1.50700 * 109.46936 * 174.41809 * 3 2 1 8 8 O 1.21282 * 120.00194 * 99.99666 * 7 3 2 9 9 N 1.34779 * 119.99958 * 280.00497 * 7 3 2 10 10 C 1.46500 * 119.99812 * 179.97438 * 9 7 3 11 11 H 1.08999 * 110.28890 * 34.29544 * 10 9 7 12 12 C 1.54375 * 110.32300 * 272.16718 * 10 9 7 13 13 N 1.48728 * 104.51683 * 217.32283 * 12 10 9 14 14 C 1.46898 * 111.01198 * 158.96875 * 13 12 10 15 15 C 1.50704 * 109.46531 * 174.61732 * 14 13 12 16 16 O 1.21292 * 120.00250 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99431 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99704 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99738 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99978 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47074 * 60.00066 * 22 20 18 24 24 H 1.48494 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47351 * 300.00352 * 22 20 18 26 26 C 1.48556 * 104.28782 * 39.36558 * 13 12 10 27 27 C 1.54266 * 110.32136 * 156.42412 * 10 9 7 28 28 H 1.09001 * 110.32641 * 359.97438 * 27 10 9 29 29 O 1.42902 * 110.31862 * 237.78934 * 27 10 9 30 30 H 1.08997 * 109.47317 * 295.28576 * 1 2 3 31 31 H 1.09003 * 109.47179 * 55.28429 * 1 2 3 32 32 H 1.09003 * 109.46990 * 175.27877 * 1 2 3 33 33 H 1.09005 * 109.47033 * 240.00228 * 2 1 3 34 34 H 1.08995 * 109.46952 * 119.99871 * 2 1 3 35 35 H 1.09001 * 109.47330 * 295.08958 * 6 5 3 36 36 H 1.09001 * 109.47133 * 55.09064 * 6 5 3 37 37 H 1.09003 * 109.47042 * 175.08620 * 6 5 3 38 38 H 0.96993 * 119.99927 * 359.97438 * 9 7 3 39 39 H 1.08995 * 110.41305 * 336.02973 * 12 10 9 40 40 H 1.08998 * 110.41494 * 98.47453 * 12 10 9 41 41 H 1.08997 * 109.47489 * 294.61452 * 14 13 12 42 42 H 1.08996 * 109.47265 * 54.61905 * 14 13 12 43 43 H 0.96991 * 120.00505 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99991 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.41388 * 201.79619 * 26 13 12 46 46 H 1.09001 * 110.51417 * 79.39857 * 26 13 12 47 47 H 0.96708 * 113.99189 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9843 0.8358 5 16 1.5750 2.2483 -1.5573 6 6 2.0600 3.9747 -1.2841 7 6 3.5406 1.4449 0.1382 8 8 4.2396 1.5945 -0.8416 9 7 4.1059 1.2805 1.3506 10 6 5.5648 1.2821 1.4848 11 1 6.0095 1.9723 0.7680 12 6 6.1240 -0.1416 1.2763 13 7 7.2428 -0.2490 2.2504 14 6 7.5566 -1.6548 2.5391 15 6 8.7752 -1.7260 3.4229 16 8 9.3280 -0.7061 3.7770 17 7 9.2506 -2.9231 3.8199 18 6 10.3595 -2.9880 4.6235 19 1 10.8523 -2.0799 4.9381 20 6 10.8500 -4.2220 5.0323 21 7 10.2508 -5.3269 4.6490 22 14 12.3605 -4.3104 6.1278 23 1 12.0924 -3.5918 7.3994 24 1 12.6774 -5.7314 6.4202 25 1 13.5120 -3.6782 5.4353 26 6 6.7399 0.4443 3.4642 27 6 5.9700 1.6679 2.9224 28 1 5.0836 1.8565 3.5281 29 8 6.8159 2.8196 2.9074 30 1 -0.3634 0.4389 0.9292 31 1 -0.3634 0.5853 -0.8447 32 1 -0.3633 -1.0242 -0.0846 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.4544 4.4001 -0.4838 36 1 3.1127 4.0165 -1.0045 37 1 1.9045 4.5451 -2.1999 38 1 3.5469 1.1611 2.1342 39 1 5.3584 -0.8863 1.4937 40 1 6.4923 -0.2599 0.2573 41 1 6.7115 -2.1188 3.0474 42 1 7.7534 -2.1822 1.6057 43 1 8.8088 -3.7387 3.5364 44 1 10.5934 -6.1885 4.9341 45 1 7.5720 0.7656 4.0906 46 1 6.0710 -0.2070 4.0267 47 1 7.1022 3.1087 3.7847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192256252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:37 Heat of formation + Delta-G solvation = -139.127764 kcal Electronic energy + Delta-G solvation = -28345.592489 eV Core-core repulsion = 24267.635012 eV Total energy + Delta-G solvation = -4077.957477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46260 -40.40421 -39.38917 -36.81782 -35.98859 -35.80036 -35.33012 -33.28980 -31.54402 -30.08854 -29.41448 -28.74232 -27.72127 -25.97797 -23.22809 -22.82179 -22.06941 -21.70121 -21.00696 -19.89669 -18.69599 -18.29309 -17.75871 -17.64271 -17.04039 -16.70712 -16.55167 -16.35320 -15.95325 -15.81395 -15.71852 -15.47221 -15.20854 -14.73354 -14.48952 -14.35375 -14.23546 -14.16252 -13.76218 -13.52473 -13.37336 -13.31983 -13.12088 -13.07670 -12.95781 -12.94292 -12.45992 -12.43464 -12.15267 -12.13039 -11.97797 -11.86254 -11.48535 -11.14110 -11.03475 -10.85653 -10.41643 -10.26837 -10.01531 -9.41796 -8.62337 -8.46718 -5.95395 0.54610 1.36039 1.39241 1.41382 1.51440 1.52796 1.96359 2.04422 2.28222 2.78076 3.12293 3.19822 3.31625 3.46493 3.54132 3.71979 3.77831 3.94466 3.98626 4.16207 4.26060 4.26663 4.29614 4.32173 4.36270 4.41237 4.47333 4.48145 4.59205 4.68600 4.78792 4.83286 4.85106 5.00447 5.09643 5.16742 5.24904 5.40412 5.44370 5.77250 5.82060 6.04064 6.36519 6.60109 6.81723 7.09804 7.12548 7.55688 8.11466 8.70464 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002046 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.139325 B =13682.422357 C =14458.479912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.072 4.072 4 H 0.138 0.862 5 S -0.237 6.237 6 C -0.123 4.123 7 C 0.511 3.489 8 O -0.555 6.555 9 N -0.700 5.700 10 C 0.156 3.844 11 H 0.081 0.919 12 C 0.031 3.969 13 N -0.506 5.506 14 C 0.047 3.953 15 C 0.442 3.558 16 O -0.614 6.614 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.274 1.274 26 C 0.007 3.993 27 C 0.110 3.890 28 H 0.107 0.893 29 O -0.574 6.574 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.419 0.581 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.596 12.262 -4.707 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.204 4.204 4 H 0.156 0.844 5 S -0.010 6.010 6 C -0.291 4.291 7 C 0.294 3.706 8 O -0.431 6.431 9 N -0.355 5.355 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.098 4.098 13 N -0.231 5.231 14 C -0.085 4.085 15 C 0.230 3.770 16 O -0.500 6.500 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.122 4.122 27 C 0.050 3.950 28 H 0.125 0.875 29 O -0.382 6.382 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.257 0.743 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -23.767 12.609 -6.887 27.772 hybrid contribution 0.832 -0.578 2.424 2.627 sum -22.935 12.032 -4.463 26.281 Atomic orbital electron populations 1.21822 0.92819 1.02850 1.03243 1.21335 0.98307 0.90182 1.03768 1.23648 0.92856 1.03415 1.00518 0.84372 1.86885 1.79578 1.08880 1.25652 1.23481 1.04020 0.94292 1.07318 1.21034 0.91163 0.75451 0.82933 1.90786 1.64614 1.49127 1.38614 1.45772 1.06038 1.73733 1.09940 1.21237 0.80488 0.96214 0.97099 0.90101 1.23509 0.92466 0.96516 0.97331 1.65051 1.36301 1.12015 1.09724 1.21935 0.95694 0.90932 0.99905 1.20664 0.88112 0.83419 0.84840 1.90481 1.62891 1.35380 1.61230 1.41922 1.26978 1.07176 1.45104 1.19606 1.05912 0.93906 1.26702 0.90309 1.26032 1.01895 0.94071 0.99335 1.69663 1.42074 0.98226 1.46189 0.84997 0.77578 0.77559 0.78260 1.19504 1.19535 1.19936 1.23894 0.98856 0.96389 0.93018 1.22671 0.92900 0.84789 0.94673 0.87520 1.86481 1.69742 1.45634 1.36351 0.90778 0.92182 0.91487 0.92245 0.88315 0.88391 0.91930 0.87151 0.74257 0.91086 0.90590 0.90383 0.87827 0.77049 0.91312 0.90764 0.91739 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.82 71.98 0.71 -0.55 16 2 C -0.10 -1.07 5.38 30.60 0.16 -0.90 16 3 C -0.07 -0.95 2.60 29.85 0.08 -0.87 16 4 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 5 S -0.24 -4.19 19.79 -56.49 -1.12 -5.31 16 6 C -0.12 -1.74 10.61 113.37 1.20 -0.53 16 7 C 0.51 9.89 6.66 87.66 0.58 10.48 16 8 O -0.55 -16.34 15.53 -3.04 -0.05 -16.39 16 9 N -0.70 -10.69 5.08 -438.29 -2.22 -12.91 16 10 C 0.16 3.57 3.19 45.89 0.15 3.71 16 11 H 0.08 2.44 7.44 -2.39 -0.02 2.43 16 12 C 0.03 0.79 6.22 86.42 0.54 1.32 16 13 N -0.51 -16.54 5.06 -885.62 -4.48 -21.03 16 14 C 0.05 1.62 5.30 85.56 0.45 2.07 16 15 C 0.44 20.96 7.58 87.66 0.66 21.63 16 16 O -0.61 -33.71 14.42 -3.07 -0.04 -33.75 16 17 N -0.57 -29.33 5.29 -306.97 -1.62 -30.95 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 22 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C 0.01 0.19 5.54 86.45 0.48 0.67 16 27 C 0.11 2.30 4.19 31.49 0.13 2.43 16 28 H 0.11 1.34 7.65 -2.39 -0.02 1.32 16 29 O -0.57 -14.14 13.26 -148.98 -1.98 -16.12 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.65 7.01 -2.39 -0.02 0.64 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.13 7.77 -2.39 -0.02 1.11 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.42 3.11 8.33 -92.71 -0.77 2.34 16 39 H 0.07 1.49 7.91 -2.39 -0.02 1.47 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.26 7.88 -2.39 -0.02 2.24 16 42 H 0.10 3.32 8.13 -2.39 -0.02 3.30 16 43 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 45 H 0.07 2.62 6.85 -2.39 -0.02 2.61 16 46 H 0.06 1.54 7.83 -2.39 -0.02 1.53 16 47 H 0.40 6.76 9.12 -74.05 -0.68 6.09 16 Total: -1.00 -78.41 399.04 -3.94 -82.35 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: -1.17 Total: 37.23 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 6.43 Total: 21.26 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -8.05 Total: -114.07 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -2.07 Total: -66.25 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.12 Total: -5.31 kcal Total: -78.41 -3.94 -82.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192256252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.778 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds