Wall clock time and date at job start Wed Apr 1 2020 04:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47535 * 2 1 4 4 N 1.46494 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99635 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99925 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99961 * 180.02562 * 5 4 3 8 8 N 1.46895 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.48567 * 110.99876 * 170.00288 * 8 7 5 10 10 C 1.54379 * 104.59665 * 159.03808 * 9 8 7 11 11 H 1.08996 * 110.32640 * 95.13724 * 10 9 8 12 12 N 1.46495 * 110.32458 * 217.24954 * 10 9 8 13 13 C 1.34780 * 119.99962 * 273.54459 * 12 10 9 14 14 O 1.21275 * 119.99751 * 359.97438 * 13 12 10 15 15 C 1.50698 * 119.99975 * 179.97438 * 13 12 10 16 16 S 1.80998 * 109.47108 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00272 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99538 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00003 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46868 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47319 * 120.00158 * 21 19 17 24 24 H 1.48505 * 109.47022 * 240.00203 * 21 19 17 25 25 C 1.54272 * 105.05694 * 336.14270 * 10 9 8 26 26 H 1.09002 * 110.32129 * 118.90038 * 25 10 9 27 27 O 1.42894 * 110.32063 * 241.00137 * 25 10 9 28 28 C 1.48559 * 110.99824 * 285.41260 * 8 7 5 29 29 H 1.09005 * 109.46889 * 299.99675 * 1 2 3 30 30 H 1.09004 * 109.47073 * 59.99170 * 1 2 3 31 31 H 1.08996 * 109.47774 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46889 * 240.00325 * 2 1 3 33 33 H 1.08996 * 109.47223 * 120.01104 * 2 1 3 34 34 H 1.09005 * 109.46767 * 60.00250 * 3 2 1 35 35 H 1.09002 * 109.47113 * 300.00590 * 3 2 1 36 36 H 0.96995 * 120.00292 * 0.27801 * 4 3 2 37 37 H 1.09004 * 109.46932 * 300.00223 * 7 5 4 38 38 H 1.08997 * 109.47392 * 59.99562 * 7 5 4 39 39 H 1.08999 * 110.40799 * 277.81216 * 9 8 7 40 40 H 1.08997 * 110.41379 * 40.25343 * 9 8 7 41 41 H 0.97005 * 119.99817 * 93.54083 * 12 10 9 42 42 H 1.09000 * 109.47438 * 299.99811 * 15 13 12 43 43 H 1.08998 * 109.47014 * 60.00010 * 15 13 12 44 44 H 0.97005 * 120.00062 * 179.97438 * 20 19 17 45 45 H 0.96703 * 113.99872 * 179.97438 * 27 25 10 46 46 H 1.09009 * 110.41424 * 319.74545 * 28 8 7 47 47 H 1.09001 * 110.40835 * 82.18463 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5726 3.6599 0.0002 7 6 5.6860 2.6095 -0.0014 8 7 6.1757 3.9945 -0.0001 9 6 7.6411 4.0407 0.2396 10 6 8.0819 5.4148 -0.3091 11 1 8.1138 6.1507 0.4942 12 7 9.3934 5.3086 -0.9532 13 6 10.5168 5.4287 -0.2183 14 8 10.4419 5.6251 0.9761 15 6 11.8659 5.3189 -0.8807 16 16 13.1664 5.5215 0.3617 17 6 14.5931 5.3537 -0.6585 18 1 14.4815 5.1807 -1.7187 19 6 15.8604 5.4450 -0.0998 20 7 15.9964 5.6574 1.1920 21 14 17.3730 5.2679 -1.1816 22 1 16.9522 5.0373 -2.5869 23 1 18.1847 6.5089 -1.1047 24 1 18.1845 4.1157 -0.7131 25 6 7.0051 5.7964 -1.3459 26 1 6.5069 6.7202 -1.0517 27 8 7.5920 5.9408 -2.6407 28 6 6.0045 4.6209 -1.3362 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8898 34 1 1.6768 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9900 0.6023 -0.0050 37 1 6.0500 2.0949 0.8879 38 1 6.0486 2.0964 -0.8920 39 1 7.8542 3.9713 1.3063 40 1 8.1405 3.2372 -0.3018 41 1 9.4532 5.1518 -1.9086 42 1 11.9617 4.3397 -1.3500 43 1 11.9627 6.0961 -1.6387 44 1 16.8821 5.7208 1.5825 45 1 6.9616 6.1801 -3.3338 46 1 6.2477 3.9082 -2.1243 47 1 4.9853 4.9883 -1.4560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219216431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:49 Heat of formation + Delta-G solvation = -113.715490 kcal Electronic energy + Delta-G solvation = -27313.083980 eV Core-core repulsion = 23236.228462 eV Total energy + Delta-G solvation = -4076.855518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53361 -39.64803 -38.30260 -36.45440 -35.91677 -34.01934 -33.12311 -32.40650 -31.04848 -29.29857 -28.10745 -27.21927 -25.54096 -25.31454 -22.30265 -21.92524 -21.15661 -20.63286 -20.23181 -17.95680 -17.70064 -17.32193 -16.93319 -16.37056 -16.29529 -15.88775 -15.51324 -15.46645 -14.95387 -14.78588 -14.55768 -14.37212 -14.12168 -13.73161 -13.53152 -13.47946 -13.19025 -13.06473 -12.83180 -12.61342 -12.58891 -12.40540 -12.00540 -11.79548 -11.70810 -11.56164 -11.44738 -11.18419 -11.05439 -10.99129 -10.72886 -10.32303 -10.14139 -9.77721 -9.50188 -9.37435 -9.05640 -8.94041 -8.75079 -8.19728 -6.46757 -6.19529 -3.89477 2.31822 2.59209 3.00841 3.13248 3.22986 3.27517 3.32493 3.52360 3.90986 3.99923 4.20737 4.22735 4.28311 4.35452 4.39910 4.56924 4.67426 4.78607 4.85100 4.92496 5.05904 5.07263 5.07867 5.13672 5.15775 5.22638 5.32298 5.39285 5.45056 5.54868 5.59515 5.64305 5.66889 5.78456 5.92489 5.96051 6.00093 6.19844 6.33969 6.43770 6.68012 7.08688 7.32586 7.62401 7.85903 7.89304 8.37956 8.68701 9.26034 10.87967 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.001684 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.625722 B =16627.603127 C =17099.591776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.737 5.737 5 C 0.515 3.485 6 O -0.519 6.519 7 C 0.025 3.975 8 N -0.485 5.485 9 C 0.021 3.979 10 C 0.154 3.846 11 H 0.106 0.894 12 N -0.720 5.720 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.095 3.905 26 H 0.080 0.920 27 O -0.559 6.559 28 C 0.002 3.998 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.408 0.592 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.267 0.733 45 H 0.383 0.617 46 H 0.053 0.947 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.775 -10.888 -7.591 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.391 5.391 5 C 0.300 3.700 6 O -0.393 6.393 7 C -0.107 4.107 8 N -0.210 5.210 9 C -0.108 4.108 10 C 0.047 3.953 11 H 0.124 0.876 12 N -0.376 5.376 13 C 0.318 3.682 14 O -0.394 6.394 15 C -0.302 4.302 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.035 3.965 26 H 0.097 0.903 27 O -0.365 6.365 28 C -0.126 4.126 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.244 0.756 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.231 0.769 46 H 0.071 0.929 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -29.983 -9.612 -4.708 31.836 hybrid contribution 1.164 -1.312 -3.408 3.833 sum -28.819 -10.923 -8.117 31.871 Atomic orbital electron populations 1.21681 0.94473 1.02248 1.02407 1.21741 0.97093 0.95794 1.02780 1.21383 0.79431 0.97139 1.02471 1.46021 1.07421 1.08746 1.76957 1.20535 0.89804 0.83625 0.76007 1.90705 1.69990 1.31084 1.47553 1.22166 0.92582 0.92164 1.03771 1.65120 1.14072 1.14472 1.27362 1.23701 0.86527 0.97485 1.03083 1.21573 0.82138 0.96947 0.94604 0.87580 1.45808 1.03988 1.75343 1.12445 1.20359 0.85334 0.75278 0.87235 1.90696 1.87001 1.46873 1.14797 1.23513 0.96440 1.04911 1.05367 1.85375 0.94327 1.94403 1.09266 1.22919 0.92028 1.57029 0.96305 0.90895 1.24983 0.98617 0.94598 0.95369 1.70028 1.23774 1.46056 1.10458 0.86125 0.81455 0.77934 0.80026 1.19627 1.20572 1.20603 1.22796 0.92578 0.97462 0.83697 0.90252 1.86373 1.39303 1.92863 1.17915 1.23968 1.01285 0.96933 0.90455 0.92265 0.92342 0.92115 0.91321 0.91211 0.91420 0.91607 0.76618 0.87385 0.91370 0.88469 0.92644 0.75587 0.89343 0.89179 0.92268 0.76856 0.92901 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.14 -0.47 6.05 -26.73 -0.16 -0.63 16 3 C 0.12 0.69 5.67 -4.04 -0.02 0.67 16 4 N -0.74 -4.42 5.56 -60.29 -0.33 -4.75 16 5 C 0.51 4.70 7.68 -10.98 -0.08 4.61 16 6 O -0.52 -6.83 15.22 5.56 0.08 -6.74 16 7 C 0.03 0.20 5.32 -4.98 -0.03 0.17 16 8 N -0.49 -5.06 4.98 -231.41 -1.15 -6.21 16 9 C 0.02 0.24 6.17 -2.18 -0.01 0.23 16 10 C 0.15 1.97 3.36 -66.54 -0.22 1.75 16 11 H 0.11 1.55 7.64 -51.93 -0.40 1.15 16 12 N -0.72 -10.38 4.90 -52.47 -0.26 -10.64 16 13 C 0.53 10.17 7.84 -10.98 -0.09 10.08 16 14 O -0.52 -11.82 15.56 5.56 0.09 -11.74 16 15 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.11 5.49 -17.44 -0.10 2.01 16 20 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.09 0.93 4.42 -25.35 -0.11 0.82 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 O -0.56 -4.92 11.50 -35.23 -0.41 -5.32 16 28 C 0.00 0.02 5.66 -2.19 -0.01 0.01 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 1.29 8.47 -40.82 -0.35 0.94 16 37 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.07 0.43 7.77 -51.93 -0.40 0.02 16 39 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 41 H 0.41 5.22 7.18 -40.82 -0.29 4.93 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.38 1.72 9.12 45.56 0.42 2.14 16 46 H 0.05 0.45 7.69 -51.92 -0.40 0.05 16 47 H 0.10 0.95 7.23 -51.93 -0.38 0.58 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -37.63 402.38 -9.19 -46.83 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.82 Total: 3.85 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 0.04 Total: 1.59 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -1.01 Total: -47.18 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.23 Total: -23.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.63 -9.19 -46.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.888 kcal (2) G-P(sol) polarization free energy of solvation -37.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds