Wall clock time and date at job start Wed Apr 1 2020 04:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47535 * 2 1 4 4 N 1.46494 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99635 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99925 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99961 * 180.02562 * 5 4 3 8 8 N 1.46895 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.48567 * 110.99876 * 170.00288 * 8 7 5 10 10 C 1.54379 * 104.59665 * 159.03808 * 9 8 7 11 11 H 1.08996 * 110.32640 * 95.13724 * 10 9 8 12 12 N 1.46495 * 110.32458 * 217.24954 * 10 9 8 13 13 C 1.34780 * 119.99962 * 273.54459 * 12 10 9 14 14 O 1.21275 * 119.99751 * 359.97438 * 13 12 10 15 15 C 1.50698 * 119.99975 * 179.97438 * 13 12 10 16 16 S 1.80998 * 109.47108 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00272 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99538 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00003 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46868 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47319 * 120.00158 * 21 19 17 24 24 H 1.48505 * 109.47022 * 240.00203 * 21 19 17 25 25 C 1.54272 * 105.05694 * 336.14270 * 10 9 8 26 26 H 1.09002 * 110.32129 * 118.90038 * 25 10 9 27 27 O 1.42894 * 110.32063 * 241.00137 * 25 10 9 28 28 C 1.48559 * 110.99824 * 285.41260 * 8 7 5 29 29 H 1.09005 * 109.46889 * 299.99675 * 1 2 3 30 30 H 1.09004 * 109.47073 * 59.99170 * 1 2 3 31 31 H 1.08996 * 109.47774 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46889 * 240.00325 * 2 1 3 33 33 H 1.08996 * 109.47223 * 120.01104 * 2 1 3 34 34 H 1.09005 * 109.46767 * 60.00250 * 3 2 1 35 35 H 1.09002 * 109.47113 * 300.00590 * 3 2 1 36 36 H 0.96995 * 120.00292 * 0.27801 * 4 3 2 37 37 H 1.09004 * 109.46932 * 300.00223 * 7 5 4 38 38 H 1.08997 * 109.47392 * 59.99562 * 7 5 4 39 39 H 1.08999 * 110.40799 * 277.81216 * 9 8 7 40 40 H 1.08997 * 110.41379 * 40.25343 * 9 8 7 41 41 H 0.97005 * 119.99817 * 93.54083 * 12 10 9 42 42 H 1.09000 * 109.47438 * 299.99811 * 15 13 12 43 43 H 1.08998 * 109.47014 * 60.00010 * 15 13 12 44 44 H 0.97005 * 120.00062 * 179.97438 * 20 19 17 45 45 H 0.96703 * 113.99872 * 179.97438 * 27 25 10 46 46 H 1.09009 * 110.41424 * 319.74545 * 28 8 7 47 47 H 1.09001 * 110.40835 * 82.18463 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5726 3.6599 0.0002 7 6 5.6860 2.6095 -0.0014 8 7 6.1757 3.9945 -0.0001 9 6 7.6411 4.0407 0.2396 10 6 8.0819 5.4148 -0.3091 11 1 8.1138 6.1507 0.4942 12 7 9.3934 5.3086 -0.9532 13 6 10.5168 5.4287 -0.2183 14 8 10.4419 5.6251 0.9761 15 6 11.8659 5.3189 -0.8807 16 16 13.1664 5.5215 0.3617 17 6 14.5931 5.3537 -0.6585 18 1 14.4815 5.1807 -1.7187 19 6 15.8604 5.4450 -0.0998 20 7 15.9964 5.6574 1.1920 21 14 17.3730 5.2679 -1.1816 22 1 16.9522 5.0373 -2.5869 23 1 18.1847 6.5089 -1.1047 24 1 18.1845 4.1157 -0.7131 25 6 7.0051 5.7964 -1.3459 26 1 6.5069 6.7202 -1.0517 27 8 7.5920 5.9408 -2.6407 28 6 6.0045 4.6209 -1.3362 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8898 34 1 1.6768 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9900 0.6023 -0.0050 37 1 6.0500 2.0949 0.8879 38 1 6.0486 2.0964 -0.8920 39 1 7.8542 3.9713 1.3063 40 1 8.1405 3.2372 -0.3018 41 1 9.4532 5.1518 -1.9086 42 1 11.9617 4.3397 -1.3500 43 1 11.9627 6.0961 -1.6387 44 1 16.8821 5.7208 1.5825 45 1 6.9616 6.1801 -3.3338 46 1 6.2477 3.9082 -2.1243 47 1 4.9853 4.9883 -1.4560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219216431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:49 Heat of formation + Delta-G solvation = -146.456874 kcal Electronic energy + Delta-G solvation = -27314.503753 eV Core-core repulsion = 23236.228462 eV Total energy + Delta-G solvation = -4078.275291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43130 -40.62588 -39.48077 -37.07693 -36.56776 -35.27273 -34.57439 -33.62421 -32.11164 -30.53123 -29.00225 -28.05859 -27.59185 -26.02737 -22.93023 -22.51816 -22.23509 -21.52724 -21.23988 -19.86581 -18.65798 -18.07466 -17.94003 -17.34914 -16.99908 -16.87314 -16.83930 -16.57869 -16.27903 -16.02110 -15.88629 -15.32160 -15.08479 -14.92766 -14.61273 -14.30668 -14.18677 -14.01989 -13.79906 -13.59784 -13.45908 -13.18538 -13.13892 -12.92134 -12.90643 -12.63559 -12.58947 -12.54919 -12.06572 -12.03233 -11.75314 -11.68564 -11.14910 -11.06335 -10.96302 -10.90182 -10.26149 -10.14454 -10.09780 -9.59506 -8.65187 -8.33767 -6.11532 1.27000 1.42098 1.46931 1.58429 1.60448 1.63253 1.96839 2.24275 2.28981 2.93287 3.00501 3.18911 3.35453 3.43929 3.57040 3.85716 3.96007 4.00107 4.03281 4.06817 4.15663 4.21314 4.31004 4.34092 4.35910 4.41736 4.52187 4.58606 4.66387 4.75650 4.84202 4.85511 4.86226 4.91388 5.15028 5.23944 5.33712 5.34116 5.43308 5.49216 5.65510 5.72145 6.21192 6.54258 6.57094 6.81174 7.07743 7.27497 7.28219 8.75722 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.001684 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.625722 B =16627.603127 C =17099.591776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.119 3.881 4 N -0.722 5.722 5 C 0.513 3.487 6 O -0.566 6.566 7 C 0.025 3.975 8 N -0.503 5.503 9 C 0.031 3.969 10 C 0.145 3.855 11 H 0.082 0.918 12 N -0.694 5.694 13 C 0.535 3.465 14 O -0.563 6.563 15 C -0.128 4.128 16 S -0.147 6.147 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.108 3.892 26 H 0.083 0.917 27 O -0.567 6.567 28 C 0.013 3.987 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.416 0.584 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.420 0.580 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.404 0.596 46 H 0.067 0.933 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.245 -12.548 -10.226 34.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.005 4.005 4 N -0.376 5.376 5 C 0.300 3.700 6 O -0.444 6.444 7 C -0.106 4.106 8 N -0.228 5.228 9 C -0.098 4.098 10 C 0.038 3.962 11 H 0.101 0.899 12 N -0.349 5.349 13 C 0.320 3.680 14 O -0.441 6.441 15 C -0.279 4.279 16 S 0.080 5.920 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.199 1.199 25 C 0.048 3.952 26 H 0.101 0.899 27 O -0.376 6.376 28 C -0.115 4.115 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.258 0.742 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.256 0.744 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -30.508 -11.323 -7.401 33.372 hybrid contribution 1.138 -0.815 -2.623 2.973 sum -29.370 -12.137 -10.024 33.322 Atomic orbital electron populations 1.21701 0.94407 1.02729 1.02138 1.21683 0.97050 0.94050 1.03670 1.21404 0.79207 0.98610 1.01258 1.45923 1.07620 1.08726 1.75329 1.20776 0.90302 0.83640 0.75329 1.90690 1.70883 1.32799 1.50042 1.22251 0.91682 0.91111 1.05589 1.65053 1.12931 1.16393 1.28426 1.23471 0.87565 0.96696 1.02059 1.21708 0.81804 0.97464 0.95210 0.89948 1.45527 1.03451 1.73274 1.12673 1.20097 0.85888 0.75273 0.86697 1.90689 1.87490 1.49294 1.16617 1.23348 0.94737 1.06577 1.03266 1.85546 0.97727 1.94853 1.13893 1.23245 0.92474 1.57112 0.96621 0.89988 1.26109 1.02277 0.93805 0.96844 1.70187 1.24794 1.47121 1.12670 0.84909 0.76608 0.78089 0.78352 1.18068 1.19975 1.19853 1.22583 0.91167 0.97924 0.83571 0.89907 1.86303 1.40384 1.92975 1.17910 1.23872 1.00607 0.96789 0.90274 0.92716 0.92527 0.91215 0.90205 0.90445 0.92975 0.92601 0.74727 0.86028 0.88902 0.90143 0.91898 0.74155 0.87246 0.87580 0.91992 0.74364 0.91481 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.13 -0.65 6.05 30.59 0.19 -0.47 16 3 C 0.12 1.28 5.67 86.38 0.49 1.77 16 4 N -0.72 -7.50 5.56 -463.05 -2.57 -10.07 16 5 C 0.51 8.76 7.68 87.66 0.67 9.43 16 6 O -0.57 -14.80 15.22 -3.03 -0.05 -14.85 16 7 C 0.02 0.34 5.32 85.56 0.45 0.80 16 8 N -0.50 -9.87 4.98 -886.04 -4.41 -14.28 16 9 C 0.03 0.69 6.17 86.45 0.53 1.22 16 10 C 0.14 3.60 3.36 45.89 0.15 3.75 16 11 H 0.08 2.48 7.64 -2.39 -0.02 2.46 16 12 N -0.69 -19.08 4.90 -438.30 -2.15 -21.23 16 13 C 0.53 20.29 7.84 87.66 0.69 20.98 16 14 O -0.56 -26.32 15.56 -3.01 -0.05 -26.37 16 15 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 16 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 17 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 21 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.11 1.94 4.42 31.49 0.14 2.08 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 O -0.57 -8.41 11.50 -148.98 -1.71 -10.13 16 28 C 0.01 0.21 5.66 86.45 0.49 0.70 16 29 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.42 1.64 8.47 -92.71 -0.79 0.86 16 37 H 0.12 1.35 8.08 -2.38 -0.02 1.33 16 38 H 0.09 0.85 7.77 -2.39 -0.02 0.83 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 1.29 7.91 -2.39 -0.02 1.28 16 41 H 0.42 9.68 7.18 -92.70 -0.67 9.01 16 42 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 43 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 45 H 0.40 2.38 9.12 -74.06 -0.68 1.70 16 46 H 0.07 0.93 7.69 -2.38 -0.02 0.91 16 47 H 0.09 1.67 7.23 -2.39 -0.02 1.65 16 Total: -1.00 -84.06 402.38 -4.84 -88.90 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -1.12 Total: 21.68 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.07 Total: 5.88 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -8.84 Total: -101.48 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.81 Total: -51.34 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -84.06 -4.84 -88.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.558 kcal (2) G-P(sol) polarization free energy of solvation -84.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds