Wall clock time and date at job start Wed Apr 1 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47334 * 2 1 4 4 H 1.09001 * 109.47031 * 303.35355 * 3 2 1 5 5 C 1.50705 * 109.47105 * 183.35776 * 3 2 1 6 6 H 1.07997 * 119.99722 * 243.86155 * 5 3 2 7 7 C 1.37872 * 119.99819 * 63.86113 * 5 3 2 8 8 N 1.31512 * 120.00202 * 4.02574 * 7 5 3 9 9 Si 1.86803 * 119.99629 * 184.02643 * 7 5 3 10 10 H 1.48498 * 109.47143 * 84.96707 * 9 7 5 11 11 H 1.48503 * 109.46981 * 204.96753 * 9 7 5 12 12 H 1.48496 * 109.47284 * 324.96499 * 9 7 5 13 13 N 1.46502 * 109.46998 * 63.35644 * 3 2 1 14 14 C 1.34775 * 119.99795 * 274.99883 * 13 3 2 15 15 O 1.21589 * 120.00118 * 0.02562 * 14 13 3 16 16 N 1.34782 * 119.99684 * 180.02562 * 14 13 3 17 17 C 1.40067 * 119.99911 * 184.24460 * 16 14 13 18 18 C 1.38867 * 120.00345 * 324.21082 * 17 16 14 19 19 C 1.38051 * 119.99508 * 179.67397 * 18 17 16 20 20 C 1.38830 * 120.00056 * 0.62247 * 19 18 17 21 21 N 1.40330 * 119.99426 * 179.69927 * 20 19 18 22 22 C 1.33872 * 122.76300 * 95.44766 * 21 20 19 23 23 O 1.21239 * 125.39521 * 359.97438 * 22 21 20 24 24 C 1.51313 * 109.20871 * 179.84094 * 22 21 20 25 25 C 1.54229 * 103.55192 * 0.38556 * 24 22 21 26 26 C 1.33877 * 122.76108 * 275.73063 * 21 20 19 27 27 O 1.21226 * 125.39634 * 359.97438 * 26 21 20 28 28 C 1.38839 * 120.01196 * 359.67367 * 20 19 18 29 29 C 1.38044 * 120.00025 * 0.02562 * 28 20 19 30 30 H 1.09002 * 109.47053 * 300.00268 * 1 2 3 31 31 H 1.09003 * 109.46710 * 59.99715 * 1 2 3 32 32 H 1.08995 * 109.47544 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47053 * 239.99732 * 2 1 3 34 34 H 1.09004 * 109.47184 * 120.00051 * 2 1 3 35 35 H 0.97003 * 119.99662 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99714 * 95.00775 * 13 3 2 37 37 H 0.97004 * 119.99820 * 4.24312 * 16 14 13 38 38 H 1.08001 * 120.00721 * 359.97438 * 18 17 16 39 39 H 1.07998 * 120.00162 * 180.34219 * 19 18 17 40 40 H 1.08999 * 110.80049 * 241.77745 * 24 22 21 41 41 H 1.09004 * 110.54740 * 118.87137 * 24 22 21 42 42 H 1.09000 * 110.60144 * 241.26031 * 25 24 22 43 43 H 1.09004 * 110.60618 * 118.29797 * 25 24 22 44 44 H 1.07996 * 119.99977 * 180.02562 * 28 20 19 45 45 H 1.08003 * 120.00196 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6285 1.9734 -0.8584 5 6 3.5448 1.4432 -0.0832 6 1 4.1305 1.8391 0.7332 7 6 4.1736 0.9386 -1.2016 8 7 3.4609 0.5296 -2.2284 9 14 6.0379 0.8357 -1.2584 10 1 6.4840 -0.4249 -0.6127 11 1 6.4919 0.8554 -2.6722 12 1 6.6198 1.9950 -0.5355 13 7 1.6189 2.1093 1.2346 14 6 0.3990 2.6772 1.3113 15 8 -0.3521 2.6356 0.3560 16 7 0.0117 3.2912 2.4469 17 6 -1.2872 3.8032 2.5583 18 6 -1.9091 4.3659 1.4514 19 6 -3.1919 4.8644 1.5597 20 6 -3.8553 4.8150 2.7783 21 7 -5.1569 5.3275 2.8897 22 6 -6.2491 4.5609 2.7821 23 8 -6.2508 3.3653 2.5807 24 6 -7.4810 5.4223 2.9548 25 6 -6.9054 6.8364 3.1734 26 6 -5.4087 6.6243 3.1069 27 8 -4.5704 7.4912 3.2311 28 6 -3.2314 4.2581 3.8865 29 6 -1.9510 3.7538 3.7771 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9033 0.1749 -3.0154 36 1 2.2180 2.1423 1.9967 37 1 0.6326 3.3784 3.1871 38 1 -1.3911 4.4091 0.5047 39 1 -3.6777 5.2970 0.6976 40 1 -8.0571 5.1041 3.8237 41 1 -8.0970 5.3936 2.0560 42 1 -7.1952 7.2215 4.1511 43 1 -7.2330 7.5105 2.3819 44 1 -3.7478 4.2193 4.8342 45 1 -1.4658 3.3202 4.6391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220407640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:55 Heat of formation + Delta-G solvation = -80.834674 kcal Electronic energy + Delta-G solvation = -29601.757923 eV Core-core repulsion = 25390.884272 eV Total energy + Delta-G solvation = -4210.873651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.15521 -41.64122 -39.75428 -39.67224 -37.37241 -36.87712 -35.79532 -34.42412 -33.75138 -32.61318 -32.14684 -29.73999 -28.60284 -27.12122 -25.22888 -24.36635 -24.02033 -23.25527 -22.38847 -21.39838 -20.85753 -19.86844 -19.03008 -18.81280 -18.08113 -17.81460 -17.35795 -17.02640 -16.69782 -16.29934 -16.08259 -15.89690 -15.35167 -15.31348 -15.08710 -14.94006 -14.61175 -14.56553 -14.51655 -14.32882 -14.10563 -13.72879 -13.48188 -13.37028 -13.24650 -12.90882 -12.64443 -12.63303 -12.20335 -12.09734 -12.08236 -11.75990 -11.70215 -11.53732 -11.19092 -11.09447 -11.06602 -10.86682 -10.56105 -10.08861 -9.76237 -9.13065 -8.18484 -6.33651 -0.01057 0.25874 0.47626 1.44401 1.45603 1.46551 1.54985 1.66084 1.72871 2.12324 2.41583 2.62762 3.13289 3.25220 3.34829 3.41095 3.64170 3.76638 3.80995 4.07438 4.19801 4.21406 4.37514 4.46473 4.50977 4.52933 4.71506 4.78686 4.84247 4.92726 4.94124 5.03068 5.10788 5.16323 5.23959 5.26828 5.36645 5.41701 5.50386 5.59782 5.71622 5.74998 5.83401 5.88493 6.08372 6.24154 6.31678 6.74946 6.76137 7.21972 7.34377 7.68059 8.89254 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025937 B = 0.002117 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.269981 B =13224.763443 C =13580.250974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C 0.295 3.705 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.712 5.712 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.677 5.677 17 C 0.176 3.824 18 C -0.131 4.131 19 C -0.093 4.093 20 C 0.066 3.934 21 N -0.535 5.535 22 C 0.515 3.485 23 O -0.521 6.521 24 C -0.135 4.135 25 C -0.135 4.135 26 C 0.517 3.483 27 O -0.518 6.518 28 C -0.082 4.082 29 C -0.130 4.130 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.403 0.597 37 H 0.424 0.576 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 11.871 17.189 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.154 4.154 3 C 0.192 3.808 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.491 6.491 16 N -0.327 5.327 17 C 0.080 3.920 18 C -0.152 4.152 19 C -0.113 4.113 20 C -0.024 4.024 21 N -0.275 5.275 22 C 0.308 3.692 23 O -0.394 6.394 24 C -0.174 4.174 25 C -0.173 4.173 26 C 0.310 3.690 27 O -0.391 6.391 28 C -0.101 4.101 29 C -0.151 4.151 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.262 0.738 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.287 11.517 16.062 29.047 hybrid contribution 1.986 -0.334 -0.278 2.033 sum -19.301 11.183 15.784 27.326 Atomic orbital electron populations 1.21638 0.97002 0.98963 1.00170 1.21734 0.93645 0.99242 1.00766 1.18285 0.93254 0.88574 0.80724 0.97976 1.21535 0.91080 1.41899 1.04000 0.90813 1.25771 1.03377 0.94631 0.94688 1.70102 1.37401 1.42209 1.05758 0.85389 0.79104 0.78965 0.77052 1.19539 1.21467 1.18912 1.45423 1.14287 1.58171 1.18592 1.16186 0.82921 0.78642 0.82965 1.90894 1.54481 1.65946 1.37809 1.42548 1.12926 1.59591 1.17608 1.17802 0.85020 0.94272 0.94914 1.21149 0.95801 0.98665 0.99586 1.21052 0.94438 0.98931 0.96842 1.17761 0.86006 1.03917 0.94668 1.44725 1.06151 1.11854 1.64799 1.22112 0.86983 0.87349 0.72774 1.90803 1.87149 1.15706 1.45730 1.22621 0.93816 0.91454 1.09518 1.22625 0.85843 0.98991 1.09874 1.22058 0.94740 0.79700 0.72492 1.90781 1.55137 1.46294 1.46922 1.21143 0.94512 0.96447 0.98037 1.21046 0.94318 1.02506 0.97271 0.94078 0.95578 0.93746 0.92155 0.93522 0.92616 0.76196 0.73776 0.86071 0.85550 0.82810 0.83511 0.82782 0.83376 0.82989 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.48 71.98 0.61 -4.95 16 2 C -0.11 -5.64 5.47 30.59 0.17 -5.47 16 3 C 0.30 15.04 2.16 44.25 0.10 15.14 16 4 H 0.00 0.14 7.58 -2.39 -0.02 0.12 16 5 C -0.55 -28.57 8.69 25.60 0.22 -28.35 16 6 H 0.07 3.58 7.72 -2.91 -0.02 3.55 16 7 C 0.02 0.84 5.25 84.65 0.44 1.29 16 8 N -0.92 -52.86 11.78 21.44 0.25 -52.61 16 9 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 13 N -0.71 -28.89 5.01 -461.39 -2.31 -31.20 16 14 C 0.69 27.70 6.90 179.05 1.23 28.93 16 15 O -0.61 -29.61 10.96 -4.00 -0.04 -29.65 16 16 N -0.68 -20.13 5.35 -317.07 -1.69 -21.83 16 17 C 0.18 5.32 6.29 38.13 0.24 5.56 16 18 C -0.13 -4.51 8.68 22.38 0.19 -4.32 16 19 C -0.09 -2.86 9.96 22.37 0.22 -2.63 16 20 C 0.07 1.77 4.79 38.07 0.18 1.95 16 21 N -0.53 -10.91 2.59 -579.58 -1.50 -12.42 16 22 C 0.52 9.15 8.04 87.99 0.71 9.86 16 23 O -0.52 -14.41 17.65 -2.90 -0.05 -14.46 16 24 C -0.14 -0.43 7.03 30.46 0.21 -0.21 16 25 C -0.13 -0.36 7.03 30.46 0.21 -0.15 16 26 C 0.52 8.70 8.04 87.99 0.71 9.40 16 27 O -0.52 -13.28 17.65 -2.86 -0.05 -13.33 16 28 C -0.08 -1.92 9.96 22.37 0.22 -1.70 16 29 C -0.13 -3.04 9.96 22.37 0.22 -2.82 16 30 H 0.04 1.85 5.68 -2.39 -0.01 1.84 16 31 H 0.02 1.30 7.74 -2.39 -0.02 1.28 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 3.31 6.47 -2.39 -0.02 3.29 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.40 13.43 8.55 -92.71 -0.79 12.64 16 37 H 0.42 8.99 8.84 -92.71 -0.82 8.17 16 38 H 0.12 4.89 6.28 -2.91 -0.02 4.87 16 39 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 40 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.15 -0.11 8.14 -2.38 -0.02 -0.13 16 42 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.15 -0.22 8.14 -2.38 -0.02 -0.24 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -83.46 378.78 1.98 -81.49 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.55 Total: 28.49 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 5.90 Total: 21.54 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -5.25 Total: -118.05 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.15 Total: -57.44 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -83.46 1.98 -81.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220407640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.653 kcal (2) G-P(sol) polarization free energy of solvation -83.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds