Wall clock time and date at job start Wed Apr 1 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46890 * 2 1 4 4 H 1.09000 * 109.47088 * 54.99969 * 3 2 1 5 5 C 1.50703 * 109.47076 * 175.00044 * 3 2 1 6 6 H 1.07993 * 119.99884 * 119.99743 * 5 3 2 7 7 C 1.37877 * 119.99642 * 300.00121 * 5 3 2 8 8 N 1.31510 * 120.00189 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99626 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47091 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 119.99916 * 9 7 5 12 12 H 1.48503 * 109.46892 * 239.99594 * 9 7 5 13 13 N 1.46501 * 109.46926 * 294.99736 * 3 2 1 14 14 C 1.34783 * 119.99675 * 85.27707 * 13 3 2 15 15 O 1.21586 * 120.00095 * 359.72473 * 14 13 3 16 16 N 1.34773 * 119.99528 * 179.71826 * 14 13 3 17 17 C 1.40072 * 119.99897 * 175.75455 * 16 14 13 18 18 C 1.38866 * 120.00611 * 214.92780 * 17 16 14 19 19 C 1.38052 * 119.99287 * 179.67753 * 18 17 16 20 20 C 1.38822 * 120.00676 * 0.60969 * 19 18 17 21 21 N 1.40328 * 120.00149 * 179.70378 * 20 19 18 22 22 C 1.33877 * 122.76196 * 123.86247 * 21 20 19 23 23 O 1.21231 * 125.39829 * 359.97438 * 22 21 20 24 24 C 1.51317 * 109.20218 * 179.84839 * 22 21 20 25 25 C 1.54233 * 103.55513 * 0.38425 * 24 22 21 26 26 C 1.33875 * 122.75781 * 304.15887 * 21 20 19 27 27 O 1.21227 * 125.39858 * 359.97250 * 26 21 20 28 28 C 1.38838 * 120.00485 * 359.68194 * 20 19 18 29 29 C 1.38047 * 120.00620 * 359.97438 * 28 20 19 30 30 H 1.09005 * 109.47305 * 300.00331 * 1 2 3 31 31 H 1.08997 * 109.47184 * 60.00113 * 1 2 3 32 32 H 1.09001 * 109.47071 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47062 * 240.00152 * 2 1 3 34 34 H 1.08997 * 109.47184 * 119.99887 * 2 1 3 35 35 H 0.97003 * 119.99861 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00057 * 265.00182 * 13 3 2 37 37 H 0.96994 * 120.00732 * 355.76337 * 16 14 13 38 38 H 1.08002 * 119.99969 * 359.96998 * 18 17 16 39 39 H 1.08002 * 119.99741 * 180.33990 * 19 18 17 40 40 H 1.08996 * 110.79387 * 241.77883 * 24 22 21 41 41 H 1.08998 * 110.55206 * 118.87364 * 24 22 21 42 42 H 1.09000 * 110.60219 * 241.25936 * 25 24 22 43 43 H 1.08997 * 110.60288 * 118.30031 * 25 24 22 44 44 H 1.08006 * 119.99427 * 180.02562 * 28 20 19 45 45 H 1.08000 * 119.99963 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3990 1.6169 2.6102 12 1 6.4970 -0.5173 1.4630 13 7 1.6524 2.0975 -1.2519 14 6 0.4371 2.6692 -1.3651 15 8 -0.3394 2.6370 -0.4300 16 7 0.0827 3.2766 -2.5148 17 6 -1.2109 3.7926 -2.6645 18 6 -1.8374 3.7478 -3.9030 19 6 -3.1149 4.2504 -4.0486 20 6 -3.7684 4.8119 -2.9601 21 7 -5.0646 5.3283 -3.1098 22 6 -6.0982 4.9186 -2.3642 23 8 -6.0460 4.0763 -1.4938 24 6 -7.3413 5.6758 -2.7778 25 6 -6.8435 6.5967 -3.9105 26 6 -5.3704 6.2671 -4.0139 27 8 -4.5905 6.7733 -4.7919 28 6 -3.1397 4.8622 -1.7233 29 6 -1.8650 4.3534 -1.5755 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0609 2.9499 36 1 2.2718 2.1231 -1.9978 37 1 0.7234 3.3564 -3.2387 38 1 -1.3271 3.3156 -4.7510 39 1 -3.6044 4.2106 -5.0106 40 1 -7.7298 6.2650 -1.9472 41 1 -8.1022 4.9889 -3.1484 42 1 -6.9845 7.6440 -3.6432 43 1 -7.3548 6.3660 -4.8450 44 1 -3.6485 5.2988 -0.8764 45 1 -1.3763 4.3922 -0.6132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220407641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:59 Heat of formation + Delta-G solvation = -55.081029 kcal Electronic energy + Delta-G solvation = -29624.675716 eV Core-core repulsion = 25414.918827 eV Total energy + Delta-G solvation = -4209.756889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.45572 -40.22082 -38.88255 -38.46690 -36.23284 -35.52176 -34.44968 -33.11610 -32.29814 -31.02302 -30.82904 -28.49280 -26.80000 -26.60330 -23.66799 -23.37043 -22.76508 -22.24694 -20.83495 -19.96267 -19.54506 -18.29485 -18.10321 -17.51264 -17.35040 -16.64354 -16.02843 -15.60082 -15.35546 -15.10167 -14.69372 -14.57410 -14.31291 -14.28176 -14.14317 -13.98953 -13.56748 -13.50705 -13.21174 -12.92486 -12.73599 -12.61378 -12.19346 -11.85747 -11.66159 -11.51463 -11.27356 -10.98563 -10.96498 -10.88135 -10.64517 -10.33462 -10.25086 -10.20328 -9.90130 -9.59650 -9.40929 -9.05800 -8.93288 -8.53176 -8.05771 -7.73510 -6.14705 -4.24155 1.10240 1.15612 1.38292 2.17328 2.37559 3.11471 3.22246 3.30669 3.33267 3.48235 3.74156 3.77211 3.94286 3.99525 4.30202 4.35585 4.79254 4.86122 4.91968 4.94865 5.01990 5.07983 5.12517 5.17159 5.29593 5.46095 5.64161 5.95659 6.11203 6.27238 6.36415 6.41488 6.48584 6.54580 6.60705 6.67585 6.96956 6.99660 7.05413 7.13679 7.33046 7.36366 7.43403 7.50811 7.62714 7.84203 7.95096 8.16679 8.70212 8.80982 9.20474 9.44025 10.90647 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026372 B = 0.002125 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.475541 B =13175.784586 C =13679.450183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.692 3.308 15 O -0.573 6.573 16 N -0.697 5.697 17 C 0.195 3.805 18 C -0.145 4.145 19 C -0.080 4.080 20 C 0.072 3.928 21 N -0.522 5.522 22 C 0.520 3.480 23 O -0.464 6.464 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.523 3.477 27 O -0.472 6.472 28 C -0.079 4.079 29 C -0.109 4.109 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.021 0.979 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.386 0.614 37 H 0.404 0.596 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.301 11.434 -14.366 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.345 5.345 17 C 0.098 3.902 18 C -0.167 4.167 19 C -0.100 4.100 20 C -0.017 4.017 21 N -0.262 5.262 22 C 0.309 3.691 23 O -0.334 6.334 24 C -0.194 4.194 25 C -0.194 4.194 26 C 0.312 3.688 27 O -0.343 6.343 28 C -0.099 4.099 29 C -0.130 4.130 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.218 0.782 37 H 0.239 0.761 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.425 11.027 -13.173 25.931 hybrid contribution 1.618 -0.111 -0.632 1.740 sum -17.807 10.916 -13.805 25.036 Atomic orbital electron populations 1.21811 0.98205 0.97968 1.01288 1.21955 0.92719 0.99805 1.02239 1.18751 0.94055 0.88943 0.79860 0.93144 1.21250 0.90610 1.39084 1.06333 0.92033 1.24881 0.98638 0.94798 0.95370 1.69905 1.35052 1.37529 1.09322 0.86391 0.84793 0.77774 0.78111 1.19778 1.20871 1.20874 1.45850 1.13312 1.58227 1.19387 1.16121 0.83745 0.78728 0.82166 1.90901 1.51640 1.64682 1.37818 1.42942 1.12216 1.60834 1.18491 1.17638 0.85138 0.93511 0.93960 1.20707 0.94833 1.04064 0.97104 1.20639 0.94749 0.97031 0.97601 1.17565 0.84529 1.04010 0.95623 1.44349 1.09294 1.37196 1.35340 1.20974 0.85670 0.81989 0.80486 1.90845 1.84657 1.29524 1.28328 1.22469 0.96757 0.99676 1.00514 1.22469 0.92047 1.03210 1.01676 1.20942 0.91530 0.77435 0.78852 1.90796 1.56004 1.51341 1.36122 1.20886 0.94499 0.98920 0.95601 1.21312 0.94652 0.96764 1.00275 0.93103 0.94351 0.95963 0.95091 0.88238 0.92561 0.78177 0.76125 0.85029 0.85684 0.85906 0.85984 0.85953 0.85989 0.85617 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.05 2.24 -69.08 -0.15 6.90 16 4 H 0.05 1.45 7.57 -51.93 -0.39 1.05 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.72 -14.39 5.02 -59.81 -0.30 -14.69 16 14 C 0.69 13.49 6.98 -86.92 -0.61 12.88 16 15 O -0.57 -13.12 10.94 5.29 0.06 -13.06 16 16 N -0.70 -10.44 5.35 -14.19 -0.08 -10.51 16 17 C 0.19 2.92 6.30 -83.63 -0.53 2.40 16 18 C -0.15 -1.83 9.96 -39.42 -0.39 -2.22 16 19 C -0.08 -1.01 9.25 -39.43 -0.36 -1.37 16 20 C 0.07 0.96 5.34 -83.53 -0.45 0.52 16 21 N -0.52 -5.58 2.67 -59.37 -0.16 -5.74 16 22 C 0.52 5.07 7.88 -11.08 -0.09 4.98 16 23 O -0.46 -6.52 17.25 5.60 0.10 -6.42 16 24 C -0.15 -0.58 7.03 -26.94 -0.19 -0.77 16 25 C -0.15 -0.53 7.03 -26.94 -0.19 -0.71 16 26 C 0.52 4.70 7.88 -11.09 -0.09 4.61 16 27 O -0.47 -5.85 17.24 5.60 0.10 -5.75 16 28 C -0.08 -1.15 9.26 -39.43 -0.37 -1.52 16 29 C -0.11 -1.76 8.68 -39.42 -0.34 -2.11 16 30 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 31 H 0.04 0.86 5.66 -51.93 -0.29 0.57 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.39 6.62 8.56 -40.82 -0.35 6.27 16 37 H 0.40 4.61 8.84 -40.82 -0.36 4.25 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 45 H 0.15 2.78 6.24 -52.49 -0.33 2.46 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -34.63 376.17 -8.77 -43.40 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.79 Total: 10.44 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.98 Total: 5.10 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.09 Total: -54.75 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.25 Total: -25.23 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.63 -8.77 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220407641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.679 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds