Wall clock time and date at job start Wed Apr 1 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46890 * 2 1 4 4 H 1.09000 * 109.47088 * 54.99969 * 3 2 1 5 5 C 1.50703 * 109.47076 * 175.00044 * 3 2 1 6 6 H 1.07993 * 119.99884 * 119.99743 * 5 3 2 7 7 C 1.37877 * 119.99642 * 300.00121 * 5 3 2 8 8 N 1.31510 * 120.00189 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99626 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47091 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 119.99916 * 9 7 5 12 12 H 1.48503 * 109.46892 * 239.99594 * 9 7 5 13 13 N 1.46501 * 109.46926 * 294.99736 * 3 2 1 14 14 C 1.34783 * 119.99675 * 85.27707 * 13 3 2 15 15 O 1.21586 * 120.00095 * 359.72473 * 14 13 3 16 16 N 1.34773 * 119.99528 * 179.71826 * 14 13 3 17 17 C 1.40072 * 119.99897 * 175.75455 * 16 14 13 18 18 C 1.38866 * 120.00611 * 214.92780 * 17 16 14 19 19 C 1.38052 * 119.99287 * 179.67753 * 18 17 16 20 20 C 1.38822 * 120.00676 * 0.60969 * 19 18 17 21 21 N 1.40328 * 120.00149 * 179.70378 * 20 19 18 22 22 C 1.33877 * 122.76196 * 123.86247 * 21 20 19 23 23 O 1.21231 * 125.39829 * 359.97438 * 22 21 20 24 24 C 1.51317 * 109.20218 * 179.84839 * 22 21 20 25 25 C 1.54233 * 103.55513 * 0.38425 * 24 22 21 26 26 C 1.33875 * 122.75781 * 304.15887 * 21 20 19 27 27 O 1.21227 * 125.39858 * 359.97250 * 26 21 20 28 28 C 1.38838 * 120.00485 * 359.68194 * 20 19 18 29 29 C 1.38047 * 120.00620 * 359.97438 * 28 20 19 30 30 H 1.09005 * 109.47305 * 300.00331 * 1 2 3 31 31 H 1.08997 * 109.47184 * 60.00113 * 1 2 3 32 32 H 1.09001 * 109.47071 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47062 * 240.00152 * 2 1 3 34 34 H 1.08997 * 109.47184 * 119.99887 * 2 1 3 35 35 H 0.97003 * 119.99861 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00057 * 265.00182 * 13 3 2 37 37 H 0.96994 * 120.00732 * 355.76337 * 16 14 13 38 38 H 1.08002 * 119.99969 * 359.96998 * 18 17 16 39 39 H 1.08002 * 119.99741 * 180.33990 * 19 18 17 40 40 H 1.08996 * 110.79387 * 241.77883 * 24 22 21 41 41 H 1.08998 * 110.55206 * 118.87364 * 24 22 21 42 42 H 1.09000 * 110.60219 * 241.25936 * 25 24 22 43 43 H 1.08997 * 110.60288 * 118.30031 * 25 24 22 44 44 H 1.08006 * 119.99427 * 180.02562 * 28 20 19 45 45 H 1.08000 * 119.99963 * 180.02562 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3990 1.6169 2.6102 12 1 6.4970 -0.5173 1.4630 13 7 1.6524 2.0975 -1.2519 14 6 0.4371 2.6692 -1.3651 15 8 -0.3394 2.6370 -0.4300 16 7 0.0827 3.2766 -2.5148 17 6 -1.2109 3.7926 -2.6645 18 6 -1.8374 3.7478 -3.9030 19 6 -3.1149 4.2504 -4.0486 20 6 -3.7684 4.8119 -2.9601 21 7 -5.0646 5.3283 -3.1098 22 6 -6.0982 4.9186 -2.3642 23 8 -6.0460 4.0763 -1.4938 24 6 -7.3413 5.6758 -2.7778 25 6 -6.8435 6.5967 -3.9105 26 6 -5.3704 6.2671 -4.0139 27 8 -4.5905 6.7733 -4.7919 28 6 -3.1397 4.8622 -1.7233 29 6 -1.8650 4.3534 -1.5755 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0609 2.9499 36 1 2.2718 2.1231 -1.9978 37 1 0.7234 3.3564 -3.2387 38 1 -1.3271 3.3156 -4.7510 39 1 -3.6044 4.2106 -5.0106 40 1 -7.7298 6.2650 -1.9472 41 1 -8.1022 4.9889 -3.1484 42 1 -6.9845 7.6440 -3.6432 43 1 -7.3548 6.3660 -4.8450 44 1 -3.6485 5.2988 -0.8764 45 1 -1.3763 4.3922 -0.6132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220407641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:58 Heat of formation + Delta-G solvation = -79.495204 kcal Electronic energy + Delta-G solvation = -29625.734394 eV Core-core repulsion = 25414.918827 eV Total energy + Delta-G solvation = -4210.815567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.20735 -41.63214 -39.73969 -39.70033 -37.36861 -36.89587 -35.80473 -34.43951 -33.74638 -32.58218 -32.13873 -29.73639 -28.59309 -27.14367 -25.23097 -24.48085 -24.12595 -23.01557 -22.34264 -21.37943 -20.86930 -19.83490 -19.02355 -18.81914 -18.08926 -17.84405 -17.36708 -17.01176 -16.68728 -16.31710 -16.06648 -15.85995 -15.40518 -15.23485 -15.06920 -14.95061 -14.63472 -14.60301 -14.45435 -14.34834 -14.13070 -13.73496 -13.52665 -13.37383 -13.19194 -12.86959 -12.73733 -12.71278 -12.16674 -12.08678 -12.07498 -11.78913 -11.70656 -11.56938 -11.15513 -11.07625 -11.02896 -10.91568 -10.55484 -10.07766 -9.73319 -9.03440 -8.16643 -6.33703 -0.00806 0.26562 0.46009 1.43619 1.44113 1.45553 1.56569 1.65835 1.74633 2.15132 2.41574 2.66089 3.13122 3.23785 3.30220 3.42042 3.63163 3.77341 3.81417 4.04814 4.19485 4.21906 4.34679 4.48264 4.51817 4.55806 4.74089 4.78057 4.85838 4.92139 4.93543 5.04302 5.09860 5.17193 5.19212 5.27158 5.37949 5.43259 5.53008 5.60650 5.74091 5.79368 5.84620 5.89164 6.15757 6.24825 6.29429 6.73770 6.74566 7.22540 7.34603 7.68647 8.89064 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026372 B = 0.002125 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.475541 B =13175.784586 C =13679.450183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.713 5.713 14 C 0.692 3.308 15 O -0.611 6.611 16 N -0.677 5.677 17 C 0.172 3.828 18 C -0.128 4.128 19 C -0.083 4.083 20 C 0.069 3.931 21 N -0.532 5.532 22 C 0.511 3.489 23 O -0.520 6.520 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.517 3.483 27 O -0.512 6.512 28 C -0.093 4.093 29 C -0.129 4.129 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.403 0.597 37 H 0.423 0.577 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.687 12.352 -17.560 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.192 3.808 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.491 6.491 16 N -0.326 5.326 17 C 0.076 3.924 18 C -0.149 4.149 19 C -0.103 4.103 20 C -0.021 4.021 21 N -0.271 5.271 22 C 0.304 3.696 23 O -0.393 6.393 24 C -0.175 4.175 25 C -0.173 4.173 26 C 0.310 3.690 27 O -0.385 6.385 28 C -0.113 4.113 29 C -0.150 4.150 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.262 0.738 38 H 0.184 0.816 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.833 11.992 -16.454 29.130 hybrid contribution 1.930 -0.315 0.334 1.984 sum -18.903 11.677 -16.119 27.450 Atomic orbital electron populations 1.21634 0.97211 0.98827 1.00057 1.21799 0.93458 0.99317 1.01359 1.18294 0.93541 0.88796 0.80164 0.98245 1.21584 0.91215 1.38862 1.06714 0.90864 1.25767 1.03295 0.94425 0.95039 1.70058 1.36996 1.38361 1.09885 0.85311 0.79118 0.77785 0.78174 1.18396 1.21150 1.20494 1.45434 1.14080 1.58390 1.18593 1.16194 0.83058 0.78643 0.82851 1.90894 1.52671 1.65916 1.39647 1.42533 1.12830 1.59742 1.17504 1.17769 0.85216 0.94705 0.94715 1.21011 0.94625 1.02469 0.96777 1.20968 0.94801 0.96307 0.98204 1.17819 0.86122 1.03024 0.95136 1.44772 1.08376 1.37763 1.36209 1.22156 0.87149 0.81246 0.79064 1.90820 1.85589 1.32193 1.30668 1.22625 0.93893 0.99536 1.01420 1.22626 0.87154 1.04541 1.02980 1.22009 0.93737 0.75995 0.77280 1.90777 1.57691 1.52446 1.37550 1.20874 0.94218 0.99616 0.96561 1.21141 0.95626 0.98553 0.99673 0.95699 0.94172 0.93880 0.93934 0.90891 0.92594 0.76209 0.73808 0.81591 0.83474 0.83311 0.83118 0.83175 0.82778 0.85951 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.52 71.98 0.61 -5.01 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.81 16 3 C 0.30 15.12 2.24 44.25 0.10 15.22 16 4 H 0.00 -0.02 7.57 -2.39 -0.02 -0.04 16 5 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.80 5.29 84.66 0.45 1.24 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.71 -29.04 5.02 -461.39 -2.32 -31.36 16 14 C 0.69 27.80 6.98 179.05 1.25 29.05 16 15 O -0.61 -29.75 10.94 -3.99 -0.04 -29.80 16 16 N -0.68 -20.21 5.35 -317.08 -1.70 -21.91 16 17 C 0.17 5.23 6.30 38.12 0.24 5.47 16 18 C -0.13 -3.02 9.96 22.38 0.22 -2.80 16 19 C -0.08 -1.99 9.25 22.37 0.21 -1.78 16 20 C 0.07 1.86 5.34 38.06 0.20 2.06 16 21 N -0.53 -10.83 2.67 -579.59 -1.55 -12.38 16 22 C 0.51 9.37 7.88 87.99 0.69 10.07 16 23 O -0.52 -14.90 17.25 -2.88 -0.05 -14.95 16 24 C -0.14 -0.46 7.03 30.46 0.21 -0.25 16 25 C -0.13 -0.29 7.03 30.46 0.21 -0.08 16 26 C 0.52 8.13 7.88 87.99 0.69 8.82 16 27 O -0.51 -11.86 17.24 -2.86 -0.05 -11.91 16 28 C -0.09 -2.88 9.26 22.37 0.21 -2.68 16 29 C -0.13 -4.47 8.68 22.37 0.19 -4.27 16 30 H 0.02 1.25 7.85 -2.38 -0.02 1.23 16 31 H 0.04 1.84 5.66 -2.39 -0.01 1.82 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 4.06 5.95 -2.39 -0.01 4.04 16 35 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.40 13.54 8.56 -92.71 -0.79 12.74 16 37 H 0.42 9.07 8.84 -92.71 -0.82 8.25 16 38 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.15 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 45 H 0.12 4.94 6.24 -2.91 -0.02 4.92 16 Total: -1.00 -82.27 376.17 1.90 -80.37 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.55 Total: 29.10 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 5.89 Total: 20.95 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.32 Total: -117.73 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.14 Total: -56.66 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -82.27 1.90 -80.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220407641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.878 kcal (2) G-P(sol) polarization free energy of solvation -82.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds