Wall clock time and date at job start Wed Apr 1 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53002 * 109.47536 * 239.99545 * 2 1 3 5 5 O 1.45202 * 109.47018 * 119.99786 * 2 1 3 6 6 C 1.34229 * 117.00353 * 59.99679 * 5 2 1 7 7 O 1.20829 * 119.99655 * 0.02562 * 6 5 2 8 8 C 1.50694 * 120.00283 * 180.02562 * 6 5 2 9 9 N 1.46505 * 109.47119 * 180.02562 * 8 6 5 10 10 C 1.34736 * 125.87968 * 125.00198 * 9 8 6 11 11 C 1.36543 * 107.60369 * 179.71747 * 10 9 8 12 12 C 1.48319 * 126.24220 * 180.21943 * 11 10 9 13 13 C 1.39444 * 119.65442 * 180.02562 * 12 11 10 14 14 C 1.38187 * 119.14508 * 180.02562 * 13 12 11 15 15 C 1.39454 * 118.46293 * 359.97438 * 14 13 12 16 16 O 1.35740 * 120.38202 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00164 * 354.52393 * 16 15 14 18 18 H 1.08006 * 120.00014 * 5.05057 * 17 16 15 19 19 C 1.38638 * 120.00340 * 185.05724 * 17 16 15 20 20 N 1.31564 * 120.00359 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99679 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47069 * 90.00503 * 21 19 17 23 23 H 1.48502 * 109.46907 * 210.00052 * 21 19 17 24 24 H 1.48496 * 109.47144 * 330.00620 * 21 19 17 25 25 C 1.38863 * 119.23291 * 0.02562 * 15 14 13 26 26 N 1.31736 * 120.79249 * 359.71294 * 25 15 14 27 27 C 1.40921 * 107.51927 * 0.23872 * 11 10 9 28 28 N 1.30640 * 108.07503 * 0.02562 * 27 11 10 29 29 H 1.08995 * 109.47214 * 300.00471 * 1 2 3 30 30 H 1.08997 * 109.46573 * 60.00641 * 1 2 3 31 31 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47580 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46973 * 299.99825 * 3 2 1 34 34 H 1.08998 * 109.47135 * 59.99129 * 3 2 1 35 35 H 1.09003 * 109.46648 * 300.00466 * 4 2 1 36 36 H 1.08994 * 109.46787 * 59.99803 * 4 2 1 37 37 H 1.08997 * 109.47424 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.46958 * 60.00266 * 8 6 5 39 39 H 1.09003 * 109.47282 * 300.00181 * 8 6 5 40 40 H 1.08009 * 126.19939 * 359.97438 * 10 9 8 41 41 H 1.07997 * 120.42447 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.77202 * 180.02562 * 14 13 12 43 43 H 0.97001 * 120.00180 * 179.97438 * 20 19 17 44 44 H 1.08003 * 119.60365 * 179.97438 * 25 15 14 45 45 H 1.07990 * 125.96248 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3381 7 8 0.9566 -2.5027 0.5080 8 6 2.1172 -2.7433 2.5444 9 7 1.5940 -4.1100 2.4777 10 6 2.3260 -5.2396 2.5369 11 6 1.4645 -6.2952 2.4469 12 6 1.8322 -7.7318 2.4739 13 6 0.8351 -8.7012 2.3708 14 6 1.1894 -10.0366 2.3976 15 6 2.5389 -10.3637 2.5269 16 8 2.9304 -11.6630 2.5581 17 6 1.9568 -12.5955 2.5737 18 1 0.9228 -12.2982 2.4792 19 6 2.2828 -13.9359 2.7113 20 7 1.3327 -14.8458 2.7271 21 14 4.0713 -14.4501 2.8743 22 1 4.4529 -14.4661 4.3094 23 1 4.2504 -15.8076 2.2994 24 1 4.9322 -13.4856 2.1439 25 6 3.4773 -9.3448 2.6246 26 7 3.1067 -8.0811 2.5906 27 6 0.1624 -5.7707 2.3234 28 7 0.2473 -4.4671 2.3388 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2076 -2.1391 37 1 3.1301 -0.7217 -1.2489 38 1 1.7530 -2.2581 3.4499 39 1 3.2068 -2.7721 2.5607 40 1 3.3994 -5.2994 2.6411 41 1 -0.2006 -8.4120 2.2713 42 1 0.4388 -10.8091 2.3193 43 1 1.5609 -15.7837 2.8230 44 1 4.5240 -9.5914 2.7254 45 1 -0.7470 -6.3459 2.2320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242787862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:05 Heat of formation + Delta-G solvation = 7.664930 kcal Electronic energy + Delta-G solvation = -28623.343988 eV Core-core repulsion = 24416.307968 eV Total energy + Delta-G solvation = -4207.036020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48707 -40.82303 -39.53220 -37.47151 -37.22290 -34.59080 -33.57724 -32.55052 -31.43650 -31.07498 -29.14387 -27.83769 -27.79704 -27.47395 -25.35335 -23.42359 -22.74499 -22.35359 -20.65382 -20.36506 -19.83640 -18.02358 -17.68139 -17.62822 -17.18692 -16.63308 -16.58610 -15.48063 -15.25871 -15.03054 -14.77396 -14.56395 -14.28119 -14.20381 -13.98397 -13.78884 -13.46796 -13.20000 -12.92725 -12.89054 -12.63168 -12.54656 -12.47588 -12.38105 -12.34690 -12.32549 -12.10465 -11.78358 -11.64454 -11.49218 -10.98485 -10.78791 -10.65303 -10.38251 -10.34497 -9.75244 -9.41940 -9.21566 -9.06941 -8.88277 -8.66130 -7.16841 -6.53509 -4.18618 1.47930 1.83599 1.84946 2.00794 2.20031 2.56672 3.11319 3.18715 3.22762 3.34404 4.11348 4.14655 4.24521 4.29337 4.34134 4.47235 4.61105 4.63025 4.65868 4.86124 4.93720 5.01176 5.05174 5.12003 5.12051 5.26625 5.27069 5.38788 5.42302 5.50050 5.57102 5.58591 5.72538 5.80372 5.85459 5.89143 6.04631 6.12318 6.23595 6.44076 6.62121 6.77949 6.97589 6.98349 7.28189 7.46098 7.62688 7.71394 7.87240 8.66879 8.80441 9.39029 10.53274 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.031882 B = 0.001732 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.015042 B =16166.344206 C =16412.347926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.119 3.881 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.353 6.353 6 C 0.447 3.553 7 O -0.468 6.468 8 C 0.149 3.851 9 N -0.377 5.377 10 C 0.077 3.923 11 C -0.155 4.155 12 C 0.103 3.897 13 C -0.110 4.110 14 C -0.181 4.181 15 C 0.106 3.894 16 O -0.205 6.205 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.066 3.934 20 N -0.872 5.872 21 Si 0.907 3.093 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.258 1.258 25 C 0.035 3.965 26 N -0.446 5.446 27 C 0.064 3.936 28 N -0.277 5.277 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.182 0.818 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.282 0.718 44 H 0.151 0.849 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 29.400 -2.464 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.084 3.916 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.271 6.271 6 C 0.286 3.714 7 O -0.352 6.352 8 C 0.025 3.975 9 N -0.161 5.161 10 C -0.067 4.067 11 C -0.167 4.167 12 C -0.034 4.034 13 C -0.130 4.130 14 C -0.208 4.208 15 C 0.051 3.949 16 O -0.107 6.107 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.508 5.508 21 Si 0.732 3.268 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.182 1.182 25 C -0.127 4.127 26 N -0.156 5.156 27 C -0.125 4.125 28 N -0.096 5.096 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.154 0.846 40 H 0.199 0.801 41 H 0.140 0.860 42 H 0.161 0.839 43 H 0.092 0.908 44 H 0.168 0.832 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.834 30.774 -2.737 30.949 hybrid contribution 0.226 -1.892 -0.122 1.910 sum 2.061 28.881 -2.859 29.095 Atomic orbital electron populations 1.22491 0.93806 1.05009 1.02759 1.22214 0.94552 0.92150 0.82718 1.21856 1.02253 0.92455 1.03162 1.22494 1.01702 1.03246 0.96647 1.86503 1.70042 1.24873 1.45650 1.23529 0.78790 0.81199 0.87857 1.90685 1.33082 1.69546 1.41907 1.20914 1.01211 0.79314 0.96017 1.47753 1.05427 1.04120 1.58774 1.22515 0.98533 0.84480 1.01208 1.18516 0.92153 0.91567 1.14423 1.18374 0.88762 0.90210 1.06029 1.21615 0.99436 0.92443 0.99489 1.21595 0.96553 0.96628 1.05976 1.20246 0.93345 0.85831 0.95472 1.83561 1.36290 1.11123 1.79770 1.20784 0.88573 0.85660 1.51680 0.87550 1.24494 0.99903 0.94180 0.95331 1.69644 1.32846 1.01852 1.46497 0.86160 0.83269 0.78129 0.79277 1.19715 1.20647 1.18152 1.21682 0.98918 0.85829 1.06256 1.67346 1.18350 1.18686 1.11197 1.23978 0.98080 0.91156 0.99243 1.77273 0.94647 1.14620 1.23051 0.91940 0.91002 0.89620 0.91399 0.90252 0.91402 0.89800 0.90928 0.91922 0.85779 0.84614 0.80138 0.86004 0.83936 0.90806 0.83185 0.79765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 2 C 0.12 0.92 1.13 -90.62 -0.10 0.82 16 3 C -0.14 -0.72 8.85 37.16 0.33 -0.39 16 4 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 5 O -0.35 -3.07 9.89 -39.26 -0.39 -3.46 16 6 C 0.45 4.51 7.29 36.00 0.26 4.77 16 7 O -0.47 -6.29 11.20 -18.75 -0.21 -6.50 16 8 C 0.15 1.18 7.09 -5.19 -0.04 1.15 16 9 N -0.38 -4.61 3.39 -62.27 -0.21 -4.82 16 10 C 0.08 1.01 11.15 -16.89 -0.19 0.82 16 11 C -0.15 -2.40 6.06 -105.35 -0.64 -3.04 16 12 C 0.10 1.85 6.76 -82.91 -0.56 1.29 16 13 C -0.11 -1.96 9.61 -39.15 -0.38 -2.34 16 14 C -0.18 -3.75 9.25 -39.15 -0.36 -4.11 16 15 C 0.11 2.36 6.67 -38.90 -0.26 2.10 16 16 O -0.20 -5.15 8.59 0.12 0.00 -5.15 16 17 C -0.39 -10.57 9.95 30.88 0.31 -10.27 16 18 H 0.11 2.92 5.48 -52.48 -0.29 2.63 16 19 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.87 -24.32 13.96 55.48 0.77 -23.54 16 21 Si 0.91 20.83 28.62 -169.99 -4.86 15.96 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.03 0.69 11.14 -17.36 -0.19 0.50 16 26 N -0.45 -8.39 10.05 -9.61 -0.10 -8.49 16 27 C 0.06 0.92 11.41 -17.04 -0.19 0.73 16 28 N -0.28 -4.05 11.59 30.81 0.36 -3.69 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.93 5.89 -51.93 -0.31 0.62 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.90 5.89 -51.93 -0.31 0.60 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.14 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 41 H 0.12 1.79 7.02 -52.49 -0.37 1.42 16 42 H 0.14 3.02 5.75 -52.48 -0.30 2.71 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.15 2.67 8.06 -52.48 -0.42 2.24 16 45 H 0.19 2.17 7.32 -52.49 -0.38 1.79 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -32.73 382.18 -6.10 -38.83 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.74 Total: 3.73 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.49 Total: -8.62 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.82 Total: -40.55 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.60 Total: -15.10 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.86 Total: 15.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.73 -6.10 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242787862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.495 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds