Wall clock time and date at job start Wed Apr 1 2020 04:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47250 * 2 1 4 4 N 1.46506 * 109.46988 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99640 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99634 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00037 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99907 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47222 * 119.99883 * 9 7 5 12 12 H 1.48505 * 109.47129 * 240.00246 * 9 7 5 13 13 N 1.46503 * 109.46878 * 120.00336 * 2 1 3 14 14 C 1.34785 * 119.99708 * 296.18636 * 13 2 1 15 15 O 1.21597 * 119.99734 * 4.62225 * 14 13 2 16 16 C 1.47523 * 119.99786 * 184.62512 * 14 13 2 17 17 C 1.40090 * 119.93203 * 359.97438 * 16 14 13 18 18 C 1.36290 * 120.37958 * 179.97438 * 17 16 14 19 19 C 1.39859 * 120.04736 * 359.97438 * 18 17 16 20 20 N 1.35808 * 133.51227 * 180.02562 * 19 18 17 21 21 C 1.30780 * 108.79257 * 180.02562 * 20 19 18 22 22 O 1.35101 * 124.92428 * 180.02562 * 21 20 19 23 23 O 1.34330 * 110.15930 * 359.97438 * 21 20 19 24 24 C 1.35305 * 108.12511 * 0.02562 * 23 21 20 25 25 C 1.38113 * 133.76725 * 180.33436 * 24 23 21 26 26 C 1.52999 * 109.47327 * 239.99788 * 2 1 3 27 27 C 1.53002 * 117.49561 * 12.52266 * 26 2 1 28 28 C 1.52999 * 117.49944 * 303.86417 * 26 2 1 29 29 H 1.09000 * 109.47180 * 299.99880 * 1 2 3 30 30 H 1.09001 * 109.47187 * 60.00102 * 1 2 3 31 31 H 1.08996 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47396 * 299.99991 * 3 2 1 33 33 H 1.09000 * 109.46931 * 59.99967 * 3 2 1 34 34 H 0.96998 * 119.99856 * 0.02562 * 4 3 2 35 35 H 0.97005 * 120.00158 * 179.97438 * 8 7 5 36 36 H 0.96991 * 120.00280 * 115.90981 * 13 2 1 37 37 H 1.07998 * 119.80723 * 359.97438 * 17 16 14 38 38 H 1.08007 * 119.97711 * 180.02562 * 18 17 16 39 39 H 0.96703 * 113.99553 * 359.97185 * 22 21 20 40 40 H 1.07995 * 120.18204 * 359.94108 * 25 24 23 41 41 H 1.08992 * 115.55097 * 158.19178 * 26 2 1 42 42 H 1.08994 * 117.50226 * 0.02562 * 27 26 2 43 43 H 1.09008 * 117.49739 * 145.02104 * 27 26 2 44 44 H 1.08996 * 117.49684 * 214.97596 * 28 26 2 45 45 H 1.08997 * 117.50236 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1897 2.6283 0.0013 6 1 3.6497 3.5636 0.0009 7 6 5.5779 2.6282 0.0013 8 7 6.2359 1.4884 0.0012 9 14 6.5120 4.2460 0.0015 10 1 5.5470 5.3747 0.0009 11 1 7.3656 4.3245 1.2140 12 1 7.3657 4.3247 -1.2111 13 7 2.0183 -0.6907 1.1962 14 6 1.7572 -0.1871 2.4189 15 8 1.0463 0.7927 2.5337 16 6 2.3340 -0.8247 3.6177 17 6 3.1524 -1.9537 3.4836 18 6 3.6904 -2.5497 4.5850 19 6 3.4277 -2.0349 5.8585 20 7 3.8086 -2.3977 7.1106 21 6 3.2759 -1.5682 7.9700 22 8 3.4430 -1.6289 9.3092 23 8 2.5394 -0.6462 7.3281 24 6 2.6073 -0.9025 6.0012 25 6 2.0682 -0.2979 4.8826 26 6 2.0401 -0.7213 -1.2492 27 6 1.0264 -1.0203 -2.3556 28 6 1.5626 -2.1563 -1.4808 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6023 0.0006 35 1 7.2060 1.4884 0.0009 36 1 2.5260 -1.5125 1.1084 37 1 3.3581 -2.3542 2.5020 38 1 4.3209 -3.4196 4.4741 39 1 4.0064 -2.3581 9.6026 40 1 1.4415 0.5755 4.9864 41 1 3.0575 -0.4744 -1.5521 42 1 -0.0036 -0.7028 -2.1937 43 1 1.3772 -0.9705 -3.3865 44 1 2.2659 -2.8533 -1.9365 45 1 0.8848 -2.5864 -0.7435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267865449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:53 Heat of formation + Delta-G solvation = 21.882946 kcal Electronic energy + Delta-G solvation = -30366.482738 eV Core-core repulsion = 26160.063258 eV Total energy + Delta-G solvation = -4206.419480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -43.51099 -40.31791 -38.82914 -38.19884 -37.15330 -34.78748 -34.61381 -33.53461 -31.45233 -30.90110 -30.05294 -28.97553 -25.88085 -24.55623 -23.88593 -23.34064 -22.37799 -22.17269 -22.05863 -20.72533 -19.29914 -18.86210 -18.43429 -17.90499 -17.46311 -17.13333 -16.53134 -15.54456 -15.45455 -14.96056 -14.69835 -14.67458 -14.42293 -14.12405 -14.02311 -13.94956 -13.52838 -13.20873 -12.96811 -12.70728 -12.56852 -12.33536 -12.09386 -11.92794 -11.73072 -11.44680 -11.16994 -11.03722 -10.86472 -10.80358 -10.75386 -10.72596 -10.19516 -10.04107 -9.82754 -9.65132 -9.45787 -9.05282 -8.78224 -8.66045 -8.38358 -6.81290 -5.71511 -2.97249 0.32620 1.03457 1.29364 2.01857 2.99782 3.14018 3.38627 3.46866 3.53286 3.55055 3.81366 4.06531 4.17697 4.51760 4.64665 4.73544 4.77539 4.89862 4.98968 5.07847 5.11359 5.18233 5.35323 5.38724 5.45907 5.64425 5.67253 5.76551 5.79210 5.83736 5.96749 6.04137 6.04950 6.07601 6.21462 6.25050 6.27754 6.28574 6.44574 6.55581 6.60211 6.69849 6.90891 7.11749 7.31599 7.77842 7.85164 8.48161 8.52896 9.59961 10.17686 10.53663 11.51736 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008665 B = 0.003625 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.618946 B = 7721.810285 C = 9777.988654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.203 3.797 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.702 5.702 14 C 0.571 3.429 15 O -0.527 6.527 16 C -0.105 4.105 17 C -0.072 4.072 18 C -0.076 4.076 19 C 0.070 3.930 20 N -0.525 5.525 21 C 0.452 3.548 22 O -0.414 6.414 23 O -0.197 6.197 24 C -0.009 4.009 25 C -0.017 4.017 26 C -0.150 4.150 27 C -0.172 4.172 28 C -0.184 4.184 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.049 0.951 34 H 0.382 0.618 35 H 0.252 0.748 36 H 0.397 0.603 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.441 0.559 40 H 0.151 0.849 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 -13.715 8.890 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.118 3.882 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.353 5.353 14 C 0.358 3.642 15 O -0.405 6.405 16 C -0.109 4.109 17 C -0.092 4.092 18 C -0.095 4.095 19 C -0.042 4.042 20 N -0.276 5.276 21 C 0.204 3.796 22 O -0.216 6.216 23 O -0.091 6.091 24 C -0.057 4.057 25 C -0.037 4.037 26 C -0.169 4.169 27 C -0.209 4.209 28 C -0.221 4.221 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.216 0.784 35 H 0.062 0.938 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.301 0.699 40 H 0.169 0.831 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.014 -12.746 9.273 18.675 hybrid contribution 1.228 0.383 0.180 1.298 sum -8.787 -12.364 9.454 17.873 Atomic orbital electron populations 1.22290 0.94716 1.01640 1.03493 1.20058 0.93048 0.93275 0.81836 1.21094 0.86511 0.91549 0.99521 1.42241 0.99152 1.06199 1.89421 1.19277 0.89003 0.86240 1.41501 0.91315 1.24656 0.96290 0.96620 1.03491 1.69647 1.06536 1.23696 1.58625 0.86163 0.79951 0.83370 0.77060 1.20618 1.22047 1.22013 1.45790 1.56587 1.27977 1.04953 1.17663 0.80441 0.83412 0.82695 1.90729 1.37650 1.25777 1.86322 1.19752 1.00989 0.97324 0.92840 1.20946 0.94937 0.94169 0.99161 1.19878 1.00826 1.01065 0.87767 1.19605 0.97521 0.94663 0.92444 1.71132 1.28995 1.27935 0.99571 1.22295 0.87411 0.83821 0.86115 1.84644 1.70268 1.56026 1.10653 1.84379 1.59440 1.47332 1.17953 1.19773 1.05131 1.00077 0.80763 1.19828 0.98079 0.99218 0.86578 1.22579 1.00862 0.96900 0.96547 1.23059 0.99256 1.02717 0.95898 1.22968 1.04036 0.91555 1.03578 0.90401 0.91525 0.92875 0.95735 0.93320 0.78405 0.93795 0.76798 0.83961 0.83938 0.69866 0.83128 0.85889 0.88226 0.88877 0.88875 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 7.10 37.16 0.26 -2.00 16 2 C 0.20 3.22 0.54 -131.82 -0.07 3.14 16 3 C 0.14 2.95 4.91 -4.04 -0.02 2.93 16 4 N -0.73 -18.08 5.04 -59.91 -0.30 -18.38 16 5 C -0.23 -6.48 9.99 -15.06 -0.15 -6.63 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -27.93 13.06 55.49 0.72 -27.21 16 9 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 N -0.70 -10.52 4.68 -48.64 -0.23 -10.75 16 14 C 0.57 9.54 7.17 -12.47 -0.09 9.45 16 15 O -0.53 -10.28 12.55 5.28 0.07 -10.21 16 16 C -0.11 -1.55 5.88 -104.92 -0.62 -2.16 16 17 C -0.07 -0.88 9.46 -39.59 -0.37 -1.25 16 18 C -0.08 -0.91 10.03 -39.68 -0.40 -1.31 16 19 C 0.07 0.96 7.23 -84.62 -0.61 0.34 16 20 N -0.53 -6.63 11.36 -12.72 -0.14 -6.77 16 21 C 0.45 5.23 9.54 52.31 0.50 5.72 16 22 O -0.41 -3.08 13.62 -40.31 -0.55 -3.63 16 23 O -0.20 -2.73 10.79 -20.51 -0.22 -2.95 16 24 C -0.01 -0.13 7.41 -38.75 -0.29 -0.41 16 25 C -0.02 -0.26 9.60 -39.13 -0.38 -0.63 16 26 C -0.15 -2.17 4.87 -90.62 -0.44 -2.61 16 27 C -0.17 -2.04 9.63 -26.69 -0.26 -2.30 16 28 C -0.18 -2.04 9.71 -26.69 -0.26 -2.30 16 29 H 0.08 1.22 6.29 -51.93 -0.33 0.90 16 30 H 0.07 0.86 6.79 -51.93 -0.35 0.50 16 31 H 0.05 0.64 6.99 -51.93 -0.36 0.27 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 1.13 6.05 -51.93 -0.31 0.82 16 34 H 0.38 9.71 6.63 -40.82 -0.27 9.43 16 35 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.40 5.00 6.38 -40.82 -0.26 4.74 16 37 H 0.14 1.38 6.38 -52.49 -0.33 1.05 16 38 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 39 H 0.44 0.79 9.06 45.56 0.41 1.20 16 40 H 0.15 2.19 7.64 -52.49 -0.40 1.79 16 41 H 0.12 2.16 7.09 -51.93 -0.37 1.79 16 42 H 0.10 1.09 5.88 -51.93 -0.31 0.79 16 43 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.93 7.36 -51.93 -0.38 0.55 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -35.24 371.67 -7.86 -43.10 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -4.50 Total: 13.88 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -3.29 Total: -0.55 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.05 Total: -63.11 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.70 Total: -16.79 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.24 -7.86 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267865449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.983 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds