Wall clock time and date at job start Wed Apr 1 2020 04:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 N 1.46508 * 109.46743 * 299.99771 * 3 2 1 5 5 C 1.36939 * 119.99541 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00243 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99747 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99891 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00019 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46957 * 90.00688 * 9 7 5 11 11 H 1.48498 * 109.47156 * 210.00243 * 9 7 5 12 12 H 1.48499 * 109.47344 * 330.00471 * 9 7 5 13 13 N 1.46497 * 109.47221 * 239.99961 * 2 1 3 14 14 C 1.34781 * 120.00173 * 175.32431 * 13 2 1 15 15 O 1.21284 * 119.99875 * 356.06533 * 14 13 2 16 16 C 1.50699 * 120.00012 * 176.05639 * 14 13 2 17 17 N 1.46495 * 109.46998 * 180.02562 * 16 14 13 18 18 C 1.47065 * 126.30534 * 274.69498 * 17 16 14 19 19 C 1.54320 * 109.97316 * 150.90577 * 18 17 16 20 20 C 1.55608 * 104.18881 * 45.50267 * 19 18 17 21 21 S 1.67006 * 126.30188 * 95.00617 * 17 16 14 22 22 O 1.42108 * 105.12860 * 298.89221 * 21 17 16 23 23 O 1.42094 * 105.13405 * 68.56337 * 21 17 16 24 24 C 1.52995 * 109.47201 * 119.99696 * 2 1 3 25 25 C 1.53003 * 117.49692 * 121.84549 * 24 2 1 26 26 C 1.53002 * 117.49687 * 53.18579 * 24 2 1 27 27 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47397 * 300.00457 * 1 2 3 29 29 H 1.09005 * 109.47049 * 60.00460 * 1 2 3 30 30 H 1.08997 * 109.47283 * 60.00085 * 3 2 1 31 31 H 1.09004 * 109.47195 * 180.02562 * 3 2 1 32 32 H 0.96994 * 120.00009 * 0.02562 * 4 3 2 33 33 H 0.97003 * 119.99961 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00091 * 355.60305 * 13 2 1 35 35 H 1.08998 * 109.47556 * 300.00849 * 16 14 13 36 36 H 1.09008 * 109.46762 * 60.00968 * 16 14 13 37 37 H 1.09003 * 109.35802 * 271.18628 * 18 17 16 38 38 H 1.09003 * 109.35963 * 30.82517 * 18 17 16 39 39 H 1.09003 * 110.64499 * 286.77497 * 19 18 17 40 40 H 1.08996 * 110.38652 * 164.11394 * 19 18 17 41 41 H 1.09000 * 111.16271 * 204.05847 * 20 19 18 42 42 H 1.08999 * 111.16382 * 79.80012 * 20 19 18 43 43 H 1.08998 * 115.55280 * 267.51105 * 24 2 1 44 44 H 1.08995 * 117.50243 * 359.97438 * 25 24 2 45 45 H 1.08998 * 117.49595 * 145.02612 * 25 24 2 46 46 H 1.09001 * 117.49522 * 214.98000 * 26 24 2 47 47 H 1.08992 * 117.49958 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1963 5 6 1.8828 3.4440 -1.4132 6 1 2.5037 3.9689 -0.7023 7 6 1.4197 4.0984 -2.5464 8 7 1.7385 5.3582 -2.7552 9 14 0.3453 3.1908 -3.7756 10 1 -1.0823 3.3546 -3.4009 11 1 0.5676 3.7484 -5.1339 12 1 0.6963 1.7479 -3.7693 13 7 2.0183 -0.6906 -1.1961 14 6 3.3398 -0.7320 -1.4581 15 8 4.1186 -0.1376 -0.7433 16 6 3.8495 -1.5170 -2.6392 17 7 5.3087 -1.4055 -2.7066 18 6 6.0705 -0.3245 -3.3499 19 6 7.4281 -0.1413 -2.6393 20 6 7.9659 -1.5910 -2.4645 21 16 6.4132 -2.4862 -2.0732 22 8 6.1627 -2.4957 -0.6744 23 8 6.2812 -3.6586 -2.8652 24 6 2.0400 -0.7212 1.2492 25 6 2.9506 -1.9333 1.0429 26 6 1.5087 -2.1307 1.5176 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 0.9937 1.6618 -1.8345 33 1 1.4152 5.8155 -3.5473 34 1 1.3903 -1.1146 -1.8017 35 1 3.5703 -2.5647 -2.5270 36 1 3.4118 -1.1204 -3.5553 37 1 6.2389 -0.5749 -4.3973 38 1 5.5027 0.6039 -3.2884 39 1 7.2924 0.3345 -1.6681 40 1 8.1058 0.4444 -3.2604 41 1 8.6739 -1.6511 -1.6380 42 1 8.4107 -1.9598 -3.3887 43 1 2.2369 -0.0848 2.1120 44 1 3.1860 -2.2172 0.0172 45 1 3.7462 -2.0945 1.7702 46 1 1.3565 -2.4217 2.5570 47 1 0.7956 -2.5440 0.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269619797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:27 Heat of formation + Delta-G solvation = -31.089708 kcal Electronic energy + Delta-G solvation = -30820.861519 eV Core-core repulsion = 26747.588924 eV Total energy + Delta-G solvation = -4073.272596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.36870 -37.81628 -37.08712 -36.66707 -35.91681 -35.05605 -33.41749 -33.15591 -31.51126 -30.02800 -27.82144 -26.31195 -25.74236 -23.52309 -22.30858 -22.03970 -21.23613 -20.87086 -19.10463 -18.96891 -17.76177 -17.45457 -17.39221 -16.66074 -16.02342 -15.75373 -15.38486 -15.02991 -14.60520 -14.45698 -14.29644 -14.03949 -13.72494 -13.61104 -13.37385 -13.22027 -12.91287 -12.81676 -12.20265 -12.17869 -12.16114 -12.04639 -11.99383 -11.79374 -11.68191 -11.52480 -11.16500 -11.08446 -10.99466 -10.83179 -10.79170 -10.67504 -10.19995 -10.09018 -9.95077 -9.63961 -9.54870 -8.97244 -8.65784 -8.60161 -7.10879 -5.72518 -3.05242 0.07070 2.30140 3.00027 3.31577 3.35431 3.37094 3.42365 3.47818 3.77256 4.05545 4.11587 4.35552 4.59808 4.66961 4.77367 4.82816 4.90318 5.07446 5.11813 5.17715 5.18703 5.23503 5.37040 5.42377 5.51254 5.54580 5.59194 5.66589 5.73499 5.75038 5.80572 5.84801 6.03799 6.12742 6.23248 6.26858 6.33499 6.37665 6.45101 6.57209 6.91207 7.14637 7.85115 8.06644 8.46563 8.63750 9.27182 9.99337 10.21005 11.46677 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004703 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.316933 B = 5952.379672 C = 7569.961250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.198 3.802 3 C 0.145 3.855 4 N -0.750 5.750 5 C -0.229 4.229 6 H 0.088 0.912 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.884 3.116 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.281 1.281 13 N -0.725 5.725 14 C 0.492 3.508 15 O -0.494 6.494 16 C 0.139 3.861 17 N -0.971 5.971 18 C 0.080 3.920 19 C -0.122 4.122 20 C -0.597 4.597 21 S 2.568 3.432 22 O -0.940 6.940 23 O -0.965 6.965 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.186 4.186 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.357 0.643 33 H 0.257 0.743 34 H 0.393 0.607 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -18.379 0.265 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.112 3.888 3 C 0.017 3.983 4 N -0.395 5.395 5 C -0.359 4.359 6 H 0.106 0.894 7 C -0.195 4.195 8 N -0.587 5.587 9 Si 0.715 3.285 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.207 1.207 13 N -0.378 5.378 14 C 0.276 3.724 15 O -0.367 6.367 16 C 0.010 3.990 17 N -0.811 5.811 18 C -0.045 4.045 19 C -0.161 4.161 20 C -0.728 4.728 21 S 2.664 3.336 22 O -0.929 6.929 23 O -0.954 6.954 24 C -0.165 4.165 25 C -0.190 4.190 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.190 0.810 33 H 0.067 0.933 34 H 0.226 0.774 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.697 -18.625 1.297 20.195 hybrid contribution -0.817 -0.020 -1.584 1.782 sum 6.880 -18.646 -0.287 19.877 Atomic orbital electron populations 1.21995 0.93453 1.01473 1.03632 1.20094 0.93428 0.92716 0.82596 1.21150 0.99725 0.87348 0.90043 1.42605 1.62016 1.11016 1.23901 1.19074 1.25638 0.85680 1.05538 0.89402 1.24634 1.00889 0.95834 0.98178 1.69700 1.50223 1.09761 1.29025 0.86563 0.81185 0.78971 0.81814 1.21280 1.21977 1.20704 1.46057 1.07200 1.57924 1.26636 1.20920 0.82693 0.82141 0.86659 1.90689 1.55447 1.42018 1.48518 1.20840 0.78752 1.00805 0.98599 1.56699 1.13019 1.38536 1.72823 1.22127 0.91868 0.94242 0.96312 1.22675 0.95345 0.93585 1.04521 1.30825 1.19128 1.10473 1.12355 1.06521 0.77909 0.74205 0.74961 1.93661 1.82445 1.85932 1.30867 1.93604 1.85157 1.45700 1.70973 1.22519 1.04376 0.90259 0.99299 1.22892 0.92422 1.01448 1.02253 1.22984 0.97879 0.99985 1.01501 0.92616 0.90703 0.91696 0.95488 0.91752 0.81008 0.93267 0.77387 0.88056 0.87363 0.90730 0.88036 0.88043 0.87307 0.84257 0.84391 0.87369 0.89183 0.89220 0.89392 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.18 37.16 0.30 -1.70 16 2 C 0.20 3.06 0.55 -131.82 -0.07 2.98 16 3 C 0.14 2.94 4.83 -4.03 -0.02 2.92 16 4 N -0.75 -17.55 4.98 -59.90 -0.30 -17.85 16 5 C -0.23 -6.50 10.47 -15.06 -0.16 -6.66 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 8 N -0.94 -29.48 13.97 55.49 0.78 -28.71 16 9 Si 0.88 21.70 27.73 -169.99 -4.71 16.99 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 13 N -0.72 -10.21 4.20 -47.61 -0.20 -10.41 16 14 C 0.49 7.57 4.92 -10.98 -0.05 7.51 16 15 O -0.49 -9.27 12.70 5.55 0.07 -9.20 16 16 C 0.14 1.65 6.83 -5.20 -0.04 1.62 16 17 N -0.97 -11.56 2.80 -114.47 -0.32 -11.88 16 18 C 0.08 0.81 6.83 -3.04 -0.02 0.79 16 19 C -0.12 -1.02 6.81 -24.65 -0.17 -1.19 16 20 C -0.60 -4.46 7.51 38.55 0.29 -4.17 16 21 S 2.57 30.10 6.17 -107.50 -0.66 29.44 16 22 O -0.94 -14.48 18.14 -57.41 -1.04 -15.53 16 23 O -0.96 -13.47 18.13 -57.41 -1.04 -14.51 16 24 C -0.14 -2.10 4.86 -90.62 -0.44 -2.54 16 25 C -0.15 -2.23 8.52 -26.69 -0.23 -2.46 16 26 C -0.19 -2.25 9.68 -26.69 -0.26 -2.51 16 27 H 0.05 0.61 6.90 -51.93 -0.36 0.25 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.47 5.72 -51.93 -0.30 1.18 16 32 H 0.36 7.98 4.21 -40.82 -0.17 7.81 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.39 4.37 8.48 -40.82 -0.35 4.03 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.14 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.11 1.60 8.06 -51.93 -0.42 1.19 16 44 H 0.09 1.36 5.17 -51.93 -0.27 1.09 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 0.97 7.18 -51.93 -0.37 0.60 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -38.68 381.71 -9.89 -48.57 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.25 Total: 12.86 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.96 Total: -5.52 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.04 Total: -68.84 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -2.01 Total: -39.24 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: 30.10 SS G_CDS: -0.66 Total: 29.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.68 -9.89 -48.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269619797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.484 kcal (2) G-P(sol) polarization free energy of solvation -38.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds