Wall clock time and date at job start Wed Apr 1 2020 04:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 N 1.46508 * 109.46743 * 299.99771 * 3 2 1 5 5 C 1.36939 * 119.99541 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00243 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99747 * 180.02562 * 5 4 3 8 8 N 1.31617 * 119.99891 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00019 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46957 * 90.00688 * 9 7 5 11 11 H 1.48498 * 109.47156 * 210.00243 * 9 7 5 12 12 H 1.48499 * 109.47344 * 330.00471 * 9 7 5 13 13 N 1.46497 * 109.47221 * 239.99961 * 2 1 3 14 14 C 1.34781 * 120.00173 * 175.32431 * 13 2 1 15 15 O 1.21284 * 119.99875 * 356.06533 * 14 13 2 16 16 C 1.50699 * 120.00012 * 176.05639 * 14 13 2 17 17 N 1.46495 * 109.46998 * 180.02562 * 16 14 13 18 18 C 1.47065 * 126.30534 * 274.69498 * 17 16 14 19 19 C 1.54320 * 109.97316 * 150.90577 * 18 17 16 20 20 C 1.55608 * 104.18881 * 45.50267 * 19 18 17 21 21 S 1.67006 * 126.30188 * 95.00617 * 17 16 14 22 22 O 1.42108 * 105.12860 * 298.89221 * 21 17 16 23 23 O 1.42094 * 105.13405 * 68.56337 * 21 17 16 24 24 C 1.52995 * 109.47201 * 119.99696 * 2 1 3 25 25 C 1.53003 * 117.49692 * 121.84549 * 24 2 1 26 26 C 1.53002 * 117.49687 * 53.18579 * 24 2 1 27 27 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47397 * 300.00457 * 1 2 3 29 29 H 1.09005 * 109.47049 * 60.00460 * 1 2 3 30 30 H 1.08997 * 109.47283 * 60.00085 * 3 2 1 31 31 H 1.09004 * 109.47195 * 180.02562 * 3 2 1 32 32 H 0.96994 * 120.00009 * 0.02562 * 4 3 2 33 33 H 0.97003 * 119.99961 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00091 * 355.60305 * 13 2 1 35 35 H 1.08998 * 109.47556 * 300.00849 * 16 14 13 36 36 H 1.09008 * 109.46762 * 60.00968 * 16 14 13 37 37 H 1.09003 * 109.35802 * 271.18628 * 18 17 16 38 38 H 1.09003 * 109.35963 * 30.82517 * 18 17 16 39 39 H 1.09003 * 110.64499 * 286.77497 * 19 18 17 40 40 H 1.08996 * 110.38652 * 164.11394 * 19 18 17 41 41 H 1.09000 * 111.16271 * 204.05847 * 20 19 18 42 42 H 1.08999 * 111.16382 * 79.80012 * 20 19 18 43 43 H 1.08998 * 115.55280 * 267.51105 * 24 2 1 44 44 H 1.08995 * 117.50243 * 359.97438 * 25 24 2 45 45 H 1.08998 * 117.49595 * 145.02612 * 25 24 2 46 46 H 1.09001 * 117.49522 * 214.98000 * 26 24 2 47 47 H 1.08992 * 117.49958 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1331 -1.1963 5 6 1.8828 3.4440 -1.4132 6 1 2.5037 3.9689 -0.7023 7 6 1.4197 4.0984 -2.5464 8 7 1.7385 5.3582 -2.7552 9 14 0.3453 3.1908 -3.7756 10 1 -1.0823 3.3546 -3.4009 11 1 0.5676 3.7484 -5.1339 12 1 0.6963 1.7479 -3.7693 13 7 2.0183 -0.6906 -1.1961 14 6 3.3398 -0.7320 -1.4581 15 8 4.1186 -0.1376 -0.7433 16 6 3.8495 -1.5170 -2.6392 17 7 5.3087 -1.4055 -2.7066 18 6 6.0705 -0.3245 -3.3499 19 6 7.4281 -0.1413 -2.6393 20 6 7.9659 -1.5910 -2.4645 21 16 6.4132 -2.4862 -2.0732 22 8 6.1627 -2.4957 -0.6744 23 8 6.2812 -3.6586 -2.8652 24 6 2.0400 -0.7212 1.2492 25 6 2.9506 -1.9333 1.0429 26 6 1.5087 -2.1307 1.5176 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 0.9937 1.6618 -1.8345 33 1 1.4152 5.8155 -3.5473 34 1 1.3903 -1.1146 -1.8017 35 1 3.5703 -2.5647 -2.5270 36 1 3.4118 -1.1204 -3.5553 37 1 6.2389 -0.5749 -4.3973 38 1 5.5027 0.6039 -3.2884 39 1 7.2924 0.3345 -1.6681 40 1 8.1058 0.4444 -3.2604 41 1 8.6739 -1.6511 -1.6380 42 1 8.4107 -1.9598 -3.3887 43 1 2.2369 -0.0848 2.1120 44 1 3.1860 -2.2172 0.0172 45 1 3.7462 -2.0945 1.7702 46 1 1.3565 -2.4217 2.5570 47 1 0.7956 -2.5440 0.8044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269619797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:27 Heat of formation + Delta-G solvation = -62.728865 kcal Electronic energy + Delta-G solvation = -30822.233496 eV Core-core repulsion = 26747.588924 eV Total energy + Delta-G solvation = -4074.644572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57717 -38.85872 -38.06561 -37.65182 -36.90747 -36.70525 -34.88976 -34.12068 -33.29914 -31.56377 -28.69241 -27.85726 -26.60520 -25.23774 -23.13827 -23.09219 -22.81762 -22.04794 -20.47317 -19.91447 -19.67565 -18.43818 -18.32666 -17.59759 -17.21316 -16.76554 -16.73524 -16.38774 -16.03739 -15.47469 -15.42142 -15.16687 -15.05880 -15.00548 -14.68575 -14.24954 -14.06770 -13.93072 -13.65062 -13.45272 -13.37159 -13.18225 -13.16479 -13.00539 -12.83838 -12.67747 -12.42110 -12.36071 -12.27941 -12.09473 -12.03607 -11.91784 -11.78503 -11.45022 -11.25075 -11.13353 -10.94688 -10.66353 -9.87946 -9.83199 -9.18043 -7.99656 -5.31830 -0.76164 1.34413 1.41866 1.44369 1.49043 1.85392 2.30456 2.50006 2.61597 2.94615 3.01373 3.31159 3.39050 3.54948 3.61075 3.85444 3.90133 3.96717 4.00382 4.03349 4.07458 4.27682 4.28515 4.36481 4.47813 4.53505 4.56501 4.70239 4.81341 4.82921 4.89763 4.91757 4.96067 5.02501 5.06075 5.12128 5.22496 5.30050 5.30180 5.34548 5.45176 5.74090 5.80398 6.22854 6.76234 7.10824 7.51638 7.85193 8.10899 9.22761 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004703 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.316933 B = 5952.379672 C = 7569.961250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.207 3.793 3 C 0.146 3.854 4 N -0.741 5.741 5 C -0.228 4.228 6 H 0.041 0.959 7 C -0.067 4.067 8 N -0.988 5.988 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.244 1.244 13 N -0.718 5.718 14 C 0.483 3.517 15 O -0.537 6.537 16 C 0.134 3.866 17 N -0.977 5.977 18 C 0.074 3.926 19 C -0.124 4.124 20 C -0.561 4.561 21 S 2.556 3.444 22 O -0.989 6.989 23 O -0.992 6.992 24 C -0.160 4.160 25 C -0.169 4.169 26 C -0.149 4.149 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.034 0.966 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.411 0.589 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -21.190 -1.711 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.120 3.880 3 C 0.019 3.981 4 N -0.387 5.387 5 C -0.359 4.359 6 H 0.059 0.941 7 C -0.257 4.257 8 N -0.639 5.639 9 Si 0.786 3.214 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.168 1.168 13 N -0.373 5.373 14 C 0.268 3.732 15 O -0.413 6.413 16 C 0.005 3.995 17 N -0.817 5.817 18 C -0.052 4.052 19 C -0.163 4.163 20 C -0.695 4.695 21 S 2.657 3.343 22 O -0.979 6.979 23 O -0.982 6.982 24 C -0.180 4.180 25 C -0.206 4.206 26 C -0.185 4.185 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.202 0.798 33 H 0.065 0.935 34 H 0.247 0.753 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.159 0.841 41 H 0.178 0.822 42 H 0.192 0.808 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.742 -21.518 -0.659 22.559 hybrid contribution -0.380 0.985 -0.882 1.376 sum 6.362 -20.532 -1.541 21.551 Atomic orbital electron populations 1.21982 0.91261 1.03707 1.03125 1.19851 0.94832 0.89483 0.83806 1.21144 0.97993 0.90712 0.88285 1.42412 1.61931 1.09316 1.25019 1.18950 1.24649 0.87640 1.04684 0.94124 1.25532 1.02889 0.96759 1.00561 1.69916 1.52051 1.12055 1.29912 0.85344 0.78793 0.79406 0.77816 1.20343 1.22403 1.16771 1.46006 1.07398 1.57412 1.26497 1.21685 0.82710 0.81692 0.87138 1.90680 1.56543 1.43870 1.50158 1.21047 0.79076 1.01637 0.97736 1.56747 1.13189 1.38988 1.72740 1.22346 0.92002 0.92651 0.98185 1.22748 0.95320 0.94381 1.03894 1.30664 1.15874 1.08119 1.14858 1.06675 0.79537 0.74362 0.73768 1.93607 1.84011 1.86721 1.33543 1.93564 1.86245 1.47488 1.70881 1.22415 1.05805 0.91147 0.98586 1.22817 0.93738 1.02316 1.01748 1.23095 0.95883 0.96579 1.02971 0.88952 0.90810 0.92638 0.96712 0.94812 0.79847 0.93453 0.75257 0.85814 0.85054 0.87459 0.90719 0.90408 0.84070 0.82197 0.80831 0.88680 0.89681 0.90955 0.87718 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.18 71.98 0.59 -2.89 16 2 C 0.21 6.22 0.55 3.60 0.00 6.22 16 3 C 0.15 6.12 4.83 86.38 0.42 6.54 16 4 N -0.74 -34.93 4.98 -343.42 -1.71 -36.64 16 5 C -0.23 -13.42 10.47 84.03 0.88 -12.54 16 6 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 8 N -0.99 -64.01 13.97 21.65 0.30 -63.71 16 9 Si 0.96 44.20 27.73 68.60 1.90 46.11 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.24 -9.61 6.52 99.48 0.65 -8.96 16 13 N -0.72 -19.07 4.20 -422.93 -1.78 -20.85 16 14 C 0.48 14.69 4.92 87.66 0.43 15.12 16 15 O -0.54 -21.04 12.70 -3.04 -0.04 -21.08 16 16 C 0.13 3.01 6.83 85.63 0.59 3.59 16 17 N -0.98 -22.45 2.80 -516.08 -1.45 -23.90 16 18 C 0.07 1.38 6.83 86.72 0.59 1.98 16 19 C -0.12 -1.87 6.81 31.94 0.22 -1.65 16 20 C -0.56 -6.81 7.51 72.88 0.55 -6.26 16 21 S 2.56 58.33 6.17 -56.49 -0.35 57.98 16 22 O -0.99 -31.59 18.14 -127.77 -2.32 -33.91 16 23 O -0.99 -26.76 18.13 -127.77 -2.32 -29.08 16 24 C -0.16 -4.57 4.86 -10.79 -0.05 -4.62 16 25 C -0.17 -4.91 8.52 30.62 0.26 -4.65 16 26 C -0.15 -3.18 9.68 30.62 0.30 -2.88 16 27 H 0.09 1.58 6.90 -2.38 -0.02 1.57 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.47 6.86 -2.38 -0.02 1.45 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.03 1.65 5.72 -2.38 -0.01 1.64 16 32 H 0.37 15.76 4.21 -92.71 -0.39 15.37 16 33 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.41 7.80 8.48 -92.71 -0.79 7.01 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 2.92 8.06 -2.39 -0.02 2.91 16 44 H 0.08 2.56 5.17 -2.39 -0.01 2.55 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.11 1.92 7.18 -2.39 -0.02 1.91 16 Total: -1.00 -90.30 381.71 -2.75 -93.05 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.24 Total: 37.56 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.23 Total: -5.53 kcal Atomic # 7 Polarization: -140.46 SS G_CDS: -4.63 Total: -145.09 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -4.67 Total: -84.07 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.11 kcal Atomic # 16 Polarization: 58.33 SS G_CDS: -0.35 Total: 57.98 kcal Total: -90.30 -2.75 -93.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269619797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.325 kcal (2) G-P(sol) polarization free energy of solvation -90.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds