Wall clock time and date at job start Wed Apr 1 2020 04:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47499 * 2 1 4 4 N 1.46498 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99679 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00326 * 359.97438 * 5 4 3 7 7 C 1.38815 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99571 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00252 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47039 * 59.99704 * 9 7 5 11 11 H 1.48500 * 109.47112 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46809 * 299.99463 * 9 7 5 13 13 N 1.46495 * 109.47237 * 120.00509 * 2 1 3 14 14 C 1.34780 * 119.99816 * 298.22661 * 13 2 1 15 15 O 1.21615 * 120.00075 * 5.13080 * 14 13 2 16 16 C 1.47327 * 120.00298 * 185.13178 * 14 13 2 17 17 C 1.39505 * 120.30691 * 0.02562 * 16 14 13 18 18 C 1.38047 * 120.21995 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.67503 * 359.97438 * 18 17 16 20 20 C 1.38394 * 120.25234 * 0.02562 * 19 18 17 21 21 O 1.35325 * 133.75947 * 180.02562 * 20 19 18 22 22 C 1.34327 * 108.10338 * 179.21792 * 21 20 19 23 23 O 1.35103 * 124.96025 * 180.12494 * 22 21 20 24 24 N 1.30855 * 110.08014 * 0.65776 * 22 21 20 25 25 C 1.35541 * 108.77954 * 359.42606 * 24 22 21 26 26 C 1.53006 * 109.46797 * 239.99991 * 2 1 3 27 27 C 1.52995 * 117.50121 * 12.10872 * 26 2 1 28 28 C 1.52998 * 117.50047 * 303.44757 * 26 2 1 29 29 H 1.08996 * 109.47638 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46947 * 299.99836 * 1 2 3 31 31 H 1.09008 * 109.47243 * 59.99898 * 1 2 3 32 32 H 1.08997 * 109.47195 * 300.00655 * 3 2 1 33 33 H 1.09003 * 109.46887 * 60.00127 * 3 2 1 34 34 H 0.96998 * 120.00663 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99844 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00766 * 118.21909 * 13 2 1 37 37 H 1.08001 * 119.88853 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.65920 * 180.02562 * 18 17 16 39 39 H 1.08006 * 119.87166 * 180.02562 * 19 18 17 40 40 H 0.96705 * 113.99580 * 270.61569 * 23 22 21 41 41 H 1.09001 * 115.54629 * 157.77983 * 26 2 1 42 42 H 1.09007 * 117.49840 * 359.97438 * 27 26 2 43 43 H 1.08999 * 117.50160 * 145.01918 * 27 26 2 44 44 H 1.08996 * 117.49464 * 214.97930 * 28 26 2 45 45 H 1.08993 * 117.49725 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1897 2.6282 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5779 2.6282 0.0013 8 7 6.2359 1.4883 0.0012 9 14 6.5119 4.2459 0.0029 10 1 6.1531 5.0235 1.2161 11 1 7.9719 3.9745 0.0033 12 1 6.1533 5.0257 -1.2090 13 7 2.0183 -0.6907 1.1961 14 6 1.7225 -0.2098 2.4199 15 8 0.9740 0.7419 2.5347 16 6 2.3057 -0.8370 3.6186 17 6 3.1654 -1.9286 3.4944 18 6 3.7105 -2.5152 4.6189 19 6 3.4146 -2.0318 5.8811 20 6 2.5647 -0.9501 6.0318 21 8 2.0983 -0.2685 7.1039 22 6 1.3038 0.7184 6.6576 23 8 0.6604 1.6094 7.4434 24 7 1.2348 0.6838 5.3514 25 6 2.0054 -0.3361 4.9006 26 6 2.0399 -0.7213 -1.2493 27 6 1.0243 -1.0289 -2.3515 28 6 1.5701 -2.1596 -1.4759 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9901 0.6023 0.0006 35 1 7.2059 1.4883 0.0017 36 1 2.5545 -1.4942 1.1073 37 1 3.4053 -2.3160 2.5153 38 1 4.3753 -3.3596 4.5122 39 1 3.8487 -2.5005 6.7520 40 1 -0.2199 1.3233 7.7232 41 1 3.0549 -0.4691 -1.5563 42 1 -0.0073 -0.7178 -2.1864 43 1 1.3713 -0.9795 -3.3836 44 1 2.2759 -2.8535 -1.9323 45 1 0.8982 -2.5922 -0.7347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269626471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:02 Heat of formation + Delta-G solvation = 26.807302 kcal Electronic energy + Delta-G solvation = -30902.785569 eV Core-core repulsion = 26696.579625 eV Total energy + Delta-G solvation = -4206.205944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -43.36376 -40.14241 -38.61409 -37.88542 -37.07897 -34.81746 -34.50040 -33.41148 -31.79753 -30.50067 -29.49209 -29.28622 -25.82128 -24.47005 -23.68905 -23.05238 -22.69817 -22.24922 -22.01692 -20.15829 -19.60459 -18.81469 -18.16735 -17.69603 -17.24627 -17.08769 -16.32620 -15.78867 -15.23523 -15.14477 -14.65659 -14.47838 -14.40263 -14.21769 -14.11362 -13.63179 -13.16088 -12.94964 -12.68089 -12.45033 -12.24412 -12.16845 -11.98916 -11.88917 -11.83342 -11.44616 -11.32428 -11.02019 -10.79046 -10.74416 -10.68841 -10.53219 -10.14242 -10.06513 -9.78290 -9.59700 -9.23669 -8.99174 -8.72250 -8.58589 -8.43686 -6.77242 -5.67733 -2.92973 0.21943 0.95432 1.74539 2.22023 2.98566 3.30785 3.32945 3.51079 3.54307 3.56839 3.90011 4.09215 4.38593 4.58600 4.68544 4.78218 4.83042 4.89387 4.97015 5.11688 5.14338 5.23436 5.40342 5.47894 5.52006 5.65791 5.68675 5.76009 5.82254 5.86950 5.99528 6.00464 6.06752 6.11033 6.26584 6.29896 6.33884 6.36578 6.52310 6.63114 6.76144 6.86381 6.98883 7.19270 7.45413 7.81010 7.96341 8.52369 8.68896 9.63839 10.21898 10.58175 11.55607 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.004270 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.708907 B = 6556.392340 C = 8182.137293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.204 3.796 3 C 0.142 3.858 4 N -0.725 5.725 5 C -0.228 4.228 6 H 0.067 0.933 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.706 5.706 14 C 0.561 3.439 15 O -0.502 6.502 16 C -0.064 4.064 17 C -0.079 4.079 18 C -0.096 4.096 19 C -0.071 4.071 20 C 0.008 3.992 21 O -0.228 6.228 22 C 0.410 3.590 23 O -0.405 6.405 24 N -0.428 5.428 25 C 0.081 3.919 26 C -0.149 4.149 27 C -0.172 4.172 28 C -0.184 4.184 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.382 0.618 35 H 0.253 0.747 36 H 0.394 0.606 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.418 0.582 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 -14.271 9.175 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.119 3.881 3 C 0.014 3.986 4 N -0.369 5.369 5 C -0.359 4.359 6 H 0.085 0.915 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.735 3.265 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.358 5.358 14 C 0.346 3.654 15 O -0.377 6.377 16 C -0.068 4.068 17 C -0.099 4.099 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.042 4.042 21 O -0.122 6.122 22 C 0.160 3.840 23 O -0.213 6.213 24 N -0.170 5.170 25 C -0.033 4.033 26 C -0.168 4.168 27 C -0.210 4.210 28 C -0.221 4.221 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.216 0.784 35 H 0.062 0.938 36 H 0.229 0.771 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.278 0.722 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.553 -12.578 8.910 19.263 hybrid contribution 1.125 -0.204 0.708 1.345 sum -10.427 -12.782 9.618 19.095 Atomic orbital electron populations 1.22297 0.94746 1.01544 1.03570 1.20019 0.93072 0.93145 0.81861 1.21068 0.86455 0.91677 0.99370 1.42215 0.99172 1.06136 1.89396 1.19200 0.89013 0.86239 1.41458 0.91453 1.24645 0.96258 0.96624 1.03564 1.69633 1.06594 1.23767 1.58726 0.86303 0.78888 0.83450 0.77834 1.21453 1.21806 1.21370 1.45812 1.55196 1.29948 1.04878 1.17679 0.81506 0.83628 0.82553 1.90788 1.34765 1.26095 1.86031 1.19394 0.99579 0.96768 0.91032 1.21360 0.94494 0.94014 0.99998 1.20950 0.99648 1.00478 0.90378 1.19989 0.96469 0.93486 0.99056 1.19929 1.02382 0.97765 0.84160 1.84478 1.54457 1.38053 1.35253 1.22751 0.91091 0.84899 0.85260 1.84919 1.34683 1.34596 1.67074 1.71225 1.20988 1.19356 1.05395 1.19245 0.97082 0.93268 0.93741 1.22579 1.00828 0.96773 0.96607 1.23055 0.99232 1.02783 0.95889 1.22954 1.04045 0.91590 1.03537 0.93022 0.90144 0.91674 0.95754 0.93577 0.78435 0.93758 0.77073 0.83818 0.83361 0.84241 0.72200 0.85931 0.88245 0.88908 0.88931 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 7.06 37.16 0.26 -2.19 16 2 C 0.20 3.44 0.54 -131.82 -0.07 3.37 16 3 C 0.14 3.13 4.94 -4.04 -0.02 3.11 16 4 N -0.72 -18.69 5.03 -59.91 -0.30 -18.99 16 5 C -0.23 -6.64 9.99 -15.06 -0.15 -6.79 16 6 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -28.39 13.06 55.49 0.72 -27.67 16 9 Si 0.90 23.37 29.55 -169.99 -5.02 18.35 16 10 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 N -0.71 -11.37 4.67 -48.70 -0.23 -11.59 16 14 C 0.56 10.36 7.16 -12.56 -0.09 10.27 16 15 O -0.50 -10.94 12.30 5.26 0.06 -10.88 16 16 C -0.06 -1.03 5.90 -104.73 -0.62 -1.65 16 17 C -0.08 -0.95 9.53 -39.18 -0.37 -1.32 16 18 C -0.10 -0.93 10.00 -39.61 -0.40 -1.33 16 19 C -0.07 -0.75 10.04 -39.48 -0.40 -1.15 16 20 C 0.01 0.11 7.41 -38.74 -0.29 -0.18 16 21 O -0.23 -3.14 10.79 -20.56 -0.22 -3.36 16 22 C 0.41 5.84 9.54 52.35 0.50 6.34 16 23 O -0.41 -4.22 13.62 -40.31 -0.55 -4.77 16 24 N -0.43 -7.66 10.65 -12.57 -0.13 -7.79 16 25 C 0.08 1.38 6.83 -84.44 -0.58 0.80 16 26 C -0.15 -2.25 4.86 -90.62 -0.44 -2.69 16 27 C -0.17 -2.14 9.63 -26.70 -0.26 -2.40 16 28 C -0.18 -2.13 9.72 -26.70 -0.26 -2.39 16 29 H 0.05 0.67 7.00 -51.93 -0.36 0.31 16 30 H 0.08 1.39 6.12 -51.93 -0.32 1.08 16 31 H 0.06 0.90 6.81 -51.92 -0.35 0.55 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 1.15 6.22 -51.93 -0.32 0.83 16 34 H 0.38 9.97 6.63 -40.82 -0.27 9.70 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.39 5.31 6.43 -40.82 -0.26 5.04 16 37 H 0.14 1.39 6.41 -52.49 -0.34 1.06 16 38 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.42 1.57 9.06 45.56 0.41 1.99 16 41 H 0.12 2.22 7.09 -51.93 -0.37 1.85 16 42 H 0.10 1.16 5.88 -51.93 -0.31 0.85 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 0.98 7.39 -51.93 -0.38 0.60 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -38.12 371.36 -7.87 -46.00 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -4.53 Total: 13.87 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.27 Total: 1.26 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: 0.06 Total: -66.05 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.71 Total: -19.01 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.12 -7.87 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.803 kcal (2) G-P(sol) polarization free energy of solvation -38.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds