Wall clock time and date at job start Wed Apr 1 2020 04:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47499 * 2 1 4 4 N 1.46498 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99679 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00326 * 359.97438 * 5 4 3 7 7 C 1.38815 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31621 * 119.99571 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00252 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47039 * 59.99704 * 9 7 5 11 11 H 1.48500 * 109.47112 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46809 * 299.99463 * 9 7 5 13 13 N 1.46495 * 109.47237 * 120.00509 * 2 1 3 14 14 C 1.34780 * 119.99816 * 298.22661 * 13 2 1 15 15 O 1.21615 * 120.00075 * 5.13080 * 14 13 2 16 16 C 1.47327 * 120.00298 * 185.13178 * 14 13 2 17 17 C 1.39505 * 120.30691 * 0.02562 * 16 14 13 18 18 C 1.38047 * 120.21995 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.67503 * 359.97438 * 18 17 16 20 20 C 1.38394 * 120.25234 * 0.02562 * 19 18 17 21 21 O 1.35325 * 133.75947 * 180.02562 * 20 19 18 22 22 C 1.34327 * 108.10338 * 179.21792 * 21 20 19 23 23 O 1.35103 * 124.96025 * 180.12494 * 22 21 20 24 24 N 1.30855 * 110.08014 * 0.65776 * 22 21 20 25 25 C 1.35541 * 108.77954 * 359.42606 * 24 22 21 26 26 C 1.53006 * 109.46797 * 239.99991 * 2 1 3 27 27 C 1.52995 * 117.50121 * 12.10872 * 26 2 1 28 28 C 1.52998 * 117.50047 * 303.44757 * 26 2 1 29 29 H 1.08996 * 109.47638 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46947 * 299.99836 * 1 2 3 31 31 H 1.09008 * 109.47243 * 59.99898 * 1 2 3 32 32 H 1.08997 * 109.47195 * 300.00655 * 3 2 1 33 33 H 1.09003 * 109.46887 * 60.00127 * 3 2 1 34 34 H 0.96998 * 120.00663 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99844 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00766 * 118.21909 * 13 2 1 37 37 H 1.08001 * 119.88853 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.65920 * 180.02562 * 18 17 16 39 39 H 1.08006 * 119.87166 * 180.02562 * 19 18 17 40 40 H 0.96705 * 113.99580 * 270.61569 * 23 22 21 41 41 H 1.09001 * 115.54629 * 157.77983 * 26 2 1 42 42 H 1.09007 * 117.49840 * 359.97438 * 27 26 2 43 43 H 1.08999 * 117.50160 * 145.01918 * 27 26 2 44 44 H 1.08996 * 117.49464 * 214.97930 * 28 26 2 45 45 H 1.08993 * 117.49725 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1897 2.6282 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5779 2.6282 0.0013 8 7 6.2359 1.4883 0.0012 9 14 6.5119 4.2459 0.0029 10 1 6.1531 5.0235 1.2161 11 1 7.9719 3.9745 0.0033 12 1 6.1533 5.0257 -1.2090 13 7 2.0183 -0.6907 1.1961 14 6 1.7225 -0.2098 2.4199 15 8 0.9740 0.7419 2.5347 16 6 2.3057 -0.8370 3.6186 17 6 3.1654 -1.9286 3.4944 18 6 3.7105 -2.5152 4.6189 19 6 3.4146 -2.0318 5.8811 20 6 2.5647 -0.9501 6.0318 21 8 2.0983 -0.2685 7.1039 22 6 1.3038 0.7184 6.6576 23 8 0.6604 1.6094 7.4434 24 7 1.2348 0.6838 5.3514 25 6 2.0054 -0.3361 4.9006 26 6 2.0399 -0.7213 -1.2493 27 6 1.0243 -1.0289 -2.3515 28 6 1.5701 -2.1596 -1.4759 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9901 0.6023 0.0006 35 1 7.2059 1.4883 0.0017 36 1 2.5545 -1.4942 1.1073 37 1 3.4053 -2.3160 2.5153 38 1 4.3753 -3.3596 4.5122 39 1 3.8487 -2.5005 6.7520 40 1 -0.2199 1.3233 7.7232 41 1 3.0549 -0.4691 -1.5563 42 1 -0.0073 -0.7178 -2.1864 43 1 1.3713 -0.9795 -3.3836 44 1 2.2759 -2.8535 -1.9323 45 1 0.8982 -2.5922 -0.7347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269626471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:01 Heat of formation + Delta-G solvation = -5.530383 kcal Electronic energy + Delta-G solvation = -30904.187836 eV Core-core repulsion = 26696.579625 eV Total energy + Delta-G solvation = -4207.608211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.39953 -41.45804 -39.62678 -38.92797 -38.17009 -36.36176 -35.82029 -34.95842 -33.33891 -32.13148 -30.67679 -30.43297 -27.58523 -25.71879 -24.97074 -24.27410 -24.01210 -23.68435 -23.07637 -21.32582 -20.56791 -20.14274 -19.27850 -19.21048 -18.77415 -18.29963 -17.39521 -16.98902 -16.78177 -16.25404 -16.17660 -15.84986 -15.56806 -15.48285 -15.23281 -15.10715 -14.94110 -14.23285 -13.85693 -13.81876 -13.67665 -13.41823 -13.17334 -13.09807 -13.03515 -12.82893 -12.79551 -12.46996 -12.45992 -12.24625 -12.04422 -12.00145 -11.76233 -11.63541 -11.20426 -11.05220 -10.90620 -10.51378 -10.04427 -9.87978 -9.51863 -8.93844 -7.95515 -5.20753 -0.78280 -0.01351 0.78085 1.18120 1.41656 1.44945 1.50667 1.82896 2.11524 2.36715 2.54078 2.74059 3.03972 3.34534 3.38380 3.63820 3.69772 3.80206 3.91289 3.96859 3.99352 4.07412 4.20367 4.26854 4.29767 4.48473 4.58583 4.62145 4.76192 4.82555 4.87577 4.90124 4.94267 5.00415 5.06262 5.11555 5.15004 5.17254 5.32633 5.36917 5.45149 5.50065 5.53092 5.70010 6.16613 6.27675 6.40293 6.70064 7.34907 7.37985 8.08998 8.39725 9.27209 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.004270 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.708907 B = 6556.392340 C = 8182.137293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.213 3.787 3 C 0.145 3.855 4 N -0.726 5.726 5 C -0.247 4.247 6 H 0.058 0.942 7 C -0.065 4.065 8 N -0.959 5.959 9 Si 0.964 3.036 10 H -0.291 1.291 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.696 5.696 14 C 0.552 3.448 15 O -0.550 6.550 16 C -0.109 4.109 17 C -0.068 4.068 18 C -0.084 4.084 19 C -0.055 4.055 20 C -0.008 4.008 21 O -0.224 6.224 22 C 0.420 3.580 23 O -0.404 6.404 24 N -0.487 5.487 25 C 0.046 3.954 26 C -0.175 4.175 27 C -0.165 4.165 28 C -0.152 4.152 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.019 0.981 33 H 0.011 0.989 34 H 0.379 0.621 35 H 0.252 0.748 36 H 0.407 0.593 37 H 0.166 0.834 38 H 0.199 0.801 39 H 0.181 0.819 40 H 0.445 0.555 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 -17.125 9.429 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 C 0.017 3.983 4 N -0.369 5.369 5 C -0.379 4.379 6 H 0.076 0.924 7 C -0.257 4.257 8 N -0.609 5.609 9 Si 0.794 3.206 10 H -0.218 1.218 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.348 5.348 14 C 0.340 3.660 15 O -0.428 6.428 16 C -0.113 4.113 17 C -0.087 4.087 18 C -0.101 4.101 19 C -0.073 4.073 20 C -0.058 4.058 21 O -0.119 6.119 22 C 0.170 3.830 23 O -0.217 6.217 24 N -0.229 5.229 25 C -0.068 4.068 26 C -0.194 4.194 27 C -0.202 4.202 28 C -0.189 4.189 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.213 0.787 35 H 0.061 0.939 36 H 0.245 0.755 37 H 0.183 0.817 38 H 0.216 0.784 39 H 0.198 0.802 40 H 0.310 0.690 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.795 -15.470 9.160 20.970 hybrid contribution 0.867 0.685 0.693 1.305 sum -9.927 -14.784 9.854 20.353 Atomic orbital electron populations 1.22199 0.93146 1.03013 1.02746 1.19813 0.94066 0.90180 0.83192 1.21064 0.84476 0.95535 0.97199 1.42229 1.00560 1.05042 1.89078 1.19473 0.89775 0.87120 1.41526 0.92425 1.25353 0.96877 0.99824 1.03693 1.69753 1.06594 1.25279 1.59311 0.85358 0.77654 0.79855 0.77773 1.21754 1.21172 1.20340 1.45731 1.54908 1.30046 1.04151 1.18216 0.80893 0.83138 0.83756 1.90752 1.37008 1.28258 1.86808 1.19454 1.02599 0.99358 0.89890 1.21756 0.92556 0.92219 1.02211 1.21548 0.98860 1.00835 0.88891 1.20636 0.94185 0.91472 1.01015 1.20424 1.03381 0.98867 0.83138 1.84472 1.54391 1.37902 1.35097 1.22794 0.90541 0.84588 0.85072 1.84880 1.36440 1.34003 1.66330 1.71131 1.23246 1.21311 1.07250 1.19580 0.98145 0.93978 0.95060 1.22230 0.99963 1.00279 0.96946 1.23188 0.98888 1.02524 0.95593 1.23061 1.03338 0.89792 1.02707 0.90255 0.92935 0.90527 0.96321 0.97091 0.78727 0.93898 0.75538 0.81664 0.78402 0.80214 0.68974 0.89293 0.87173 0.88196 0.87311 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 7.06 71.98 0.51 -4.10 16 2 C 0.21 7.34 0.54 3.60 0.00 7.35 16 3 C 0.14 6.76 4.94 86.38 0.43 7.19 16 4 N -0.73 -39.06 5.03 -343.46 -1.73 -40.79 16 5 C -0.25 -14.91 9.99 84.03 0.84 -14.07 16 6 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 7 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 8 N -0.96 -58.62 13.06 21.65 0.28 -58.34 16 9 Si 0.96 48.65 29.55 68.60 2.03 50.67 16 10 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 13 N -0.70 -22.85 4.67 -426.25 -1.99 -24.85 16 14 C 0.55 21.52 7.16 86.63 0.62 22.14 16 15 O -0.55 -25.99 12.30 -4.08 -0.05 -26.04 16 16 C -0.11 -3.63 5.90 -19.94 -0.12 -3.75 16 17 C -0.07 -1.52 9.53 22.53 0.21 -1.30 16 18 C -0.08 -1.29 10.00 22.25 0.22 -1.07 16 19 C -0.05 -0.97 10.04 22.34 0.22 -0.75 16 20 C -0.01 -0.23 7.41 22.82 0.17 -0.06 16 21 O -0.22 -6.14 10.79 9.16 0.10 -6.04 16 22 C 0.42 12.40 9.54 130.39 1.24 13.64 16 23 O -0.40 -8.54 13.62 -61.51 -0.84 -9.38 16 24 N -0.49 -18.55 10.65 -421.86 -4.49 -23.05 16 25 C 0.05 1.64 6.83 39.73 0.27 1.91 16 26 C -0.18 -5.18 4.86 -10.79 -0.05 -5.23 16 27 C -0.16 -3.73 9.63 30.62 0.29 -3.43 16 28 C -0.15 -3.06 9.72 30.62 0.30 -2.77 16 29 H 0.08 1.93 7.00 -2.39 -0.02 1.92 16 30 H 0.05 1.91 6.12 -2.39 -0.01 1.90 16 31 H 0.08 2.09 6.81 -2.38 -0.02 2.07 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.01 0.60 6.22 -2.39 -0.01 0.59 16 34 H 0.38 20.51 6.63 -92.71 -0.61 19.90 16 35 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.41 10.72 6.43 -92.71 -0.60 10.13 16 37 H 0.17 2.79 6.41 -2.91 -0.02 2.77 16 38 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.44 3.26 9.06 -74.05 -0.67 2.59 16 41 H 0.09 3.29 7.09 -2.39 -0.02 3.27 16 42 H 0.11 2.27 5.88 -2.38 -0.01 2.26 16 43 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.11 1.87 7.39 -2.39 -0.02 1.86 16 Total: -1.00 -89.28 371.36 -1.85 -91.12 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.79 Total: 34.39 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.63 Total: 12.30 kcal Atomic # 7 Polarization: -139.10 SS G_CDS: -7.93 Total: -147.02 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.79 Total: -41.46 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -89.28 -1.85 -91.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.593 kcal (2) G-P(sol) polarization free energy of solvation -89.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds