Wall clock time and date at job start Wed Apr 1 2020 04:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 N 1.46504 * 109.47191 * 300.00032 * 3 2 1 5 5 C 1.36933 * 119.99874 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00365 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99743 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00234 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47334 * 90.00135 * 9 7 5 11 11 H 1.48501 * 109.47066 * 210.00302 * 9 7 5 12 12 H 1.48500 * 109.46781 * 330.00198 * 9 7 5 13 13 N 1.46494 * 109.46867 * 239.99987 * 2 1 3 14 14 C 1.34779 * 119.99544 * 173.96740 * 13 2 1 15 15 O 1.21613 * 120.00725 * 5.27376 * 14 13 2 16 16 C 1.47335 * 119.99831 * 185.28039 * 14 13 2 17 17 C 1.39499 * 120.30501 * 359.71713 * 16 14 13 18 18 C 1.38050 * 120.21596 * 179.77744 * 17 16 14 19 19 C 1.38377 * 120.67459 * 0.46768 * 18 17 16 20 20 C 1.38389 * 120.25078 * 359.79270 * 19 18 17 21 21 O 1.35324 * 133.76561 * 179.97438 * 20 19 18 22 22 C 1.34320 * 108.11153 * 180.02562 * 21 20 19 23 23 O 1.35098 * 124.95866 * 179.97438 * 22 21 20 24 24 N 1.30854 * 110.07917 * 0.02562 * 22 21 20 25 25 C 1.35532 * 108.78214 * 359.97438 * 24 22 21 26 26 C 1.53002 * 109.46914 * 119.99728 * 2 1 3 27 27 C 1.52997 * 117.50018 * 54.46013 * 26 2 1 28 28 C 1.53004 * 117.49578 * 123.08478 * 26 2 1 29 29 H 1.08998 * 109.46914 * 299.99951 * 1 2 3 30 30 H 1.08997 * 109.47188 * 60.00045 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47628 * 59.99968 * 3 2 1 33 33 H 1.08996 * 109.47254 * 180.02562 * 3 2 1 34 34 H 0.96998 * 119.99416 * 359.97438 * 4 3 2 35 35 H 0.96996 * 119.99803 * 179.97438 * 8 7 5 36 36 H 0.96995 * 120.00303 * 353.96035 * 13 2 1 37 37 H 1.07999 * 119.89225 * 359.97438 * 17 16 14 38 38 H 1.07995 * 119.66302 * 180.26249 * 18 17 16 39 39 H 1.07995 * 119.87046 * 179.77759 * 19 18 17 40 40 H 0.96703 * 113.99882 * 0.02562 * 23 22 21 41 41 H 1.09002 * 115.56297 * 268.76572 * 26 2 1 42 42 H 1.09004 * 117.49816 * 359.97438 * 27 26 2 43 43 H 1.08994 * 117.50040 * 214.97546 * 27 26 2 44 44 H 1.09000 * 117.49495 * 145.02096 * 28 26 2 45 45 H 1.09001 * 117.49579 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8828 3.4440 -1.4131 6 1 2.5037 3.9688 -0.7023 7 6 1.4196 4.0985 -2.5463 8 7 1.7376 5.3586 -2.7545 9 14 0.3451 3.1908 -3.7755 10 1 -1.0824 3.3544 -3.4008 11 1 0.5674 3.7485 -5.1338 12 1 0.6963 1.7480 -3.7693 13 7 2.0183 -0.6906 -1.1961 14 6 3.3373 -0.7085 -1.4726 15 8 4.1310 -0.2356 -0.6818 16 6 3.8178 -1.3011 -2.7331 17 6 2.9136 -1.8506 -3.6422 18 6 3.3654 -2.4012 -4.8248 19 6 4.7168 -2.4254 -5.1213 20 6 5.6349 -1.8917 -4.2340 21 8 6.9827 -1.7707 -4.2415 22 6 7.3536 -1.1615 -3.1033 23 8 8.6277 -0.8709 -2.7605 24 7 6.3008 -0.8916 -2.3745 25 6 5.1951 -1.3239 -3.0283 26 6 2.0400 -0.7212 1.2493 27 6 1.5317 -2.1420 1.5018 28 6 2.9739 -1.9156 1.0437 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 0.9943 1.6615 -1.8348 35 1 1.4142 5.8158 -3.5465 36 1 1.3924 -1.1350 -1.7891 37 1 1.8564 -1.8424 -3.4216 38 1 2.6572 -2.8204 -5.5241 39 1 5.0562 -2.8626 -6.0486 40 1 9.2833 -1.1420 -3.4175 41 1 2.2167 -0.0880 2.1187 42 1 0.8337 -2.5629 0.7780 43 1 1.3740 -2.4436 2.5372 44 1 3.7650 -2.0681 1.7780 45 1 3.2247 -2.1877 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269626472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:07 Heat of formation + Delta-G solvation = 36.450329 kcal Electronic energy + Delta-G solvation = -31380.565820 eV Core-core repulsion = 27174.778029 eV Total energy + Delta-G solvation = -4205.787791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.46582 -40.46178 -38.76814 -37.82319 -36.75196 -35.08012 -34.79395 -33.41507 -31.89016 -30.71582 -29.63135 -29.53679 -26.29199 -24.46069 -23.61221 -23.30921 -22.87440 -22.05196 -21.11310 -20.59848 -19.97387 -19.04715 -18.09365 -17.72257 -17.40796 -17.36819 -16.31035 -15.98162 -15.44547 -15.26846 -14.83057 -14.44025 -14.39929 -14.01397 -13.94342 -13.76407 -13.65505 -13.49849 -12.78924 -12.53815 -12.40130 -12.20512 -12.13699 -12.04593 -11.90389 -11.50080 -11.23301 -11.08825 -10.96619 -10.80466 -10.77396 -10.51524 -10.14171 -10.11079 -9.84211 -9.49499 -9.23867 -9.03818 -8.73532 -8.59576 -8.39113 -7.06269 -5.65807 -2.98713 0.28706 0.90161 1.72526 2.32371 2.85258 2.95357 3.30370 3.37867 3.39699 3.46948 3.85641 4.04933 4.31265 4.46569 4.66202 4.67420 4.75202 4.83007 4.88839 5.02997 5.12788 5.18967 5.36702 5.38272 5.51110 5.63498 5.65675 5.68949 5.76435 5.79000 5.84391 5.91107 5.98660 6.03042 6.14575 6.20280 6.30757 6.31274 6.37926 6.46293 6.51881 6.58487 6.93234 7.15106 7.60369 7.84755 8.13056 8.53094 8.64760 9.33324 10.05200 10.26322 11.53463 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.004786 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.148094 B = 5848.815940 C = 7189.872693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.199 3.801 3 C 0.145 3.855 4 N -0.749 5.749 5 C -0.229 4.229 6 H 0.089 0.911 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.279 1.279 13 N -0.719 5.719 14 C 0.559 3.441 15 O -0.482 6.482 16 C -0.076 4.076 17 C -0.079 4.079 18 C -0.109 4.109 19 C -0.063 4.063 20 C -0.007 4.007 21 O -0.247 6.247 22 C 0.433 3.567 23 O -0.385 6.385 24 N -0.440 5.440 25 C 0.103 3.897 26 C -0.143 4.143 27 C -0.186 4.186 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.357 0.643 35 H 0.257 0.743 36 H 0.391 0.609 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.423 0.577 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -23.387 -2.895 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.113 3.887 3 C 0.017 3.983 4 N -0.395 5.395 5 C -0.359 4.359 6 H 0.107 0.893 7 C -0.195 4.195 8 N -0.587 5.587 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.220 1.220 12 H -0.205 1.205 13 N -0.373 5.373 14 C 0.345 3.655 15 O -0.355 6.355 16 C -0.081 4.081 17 C -0.099 4.099 18 C -0.128 4.128 19 C -0.082 4.082 20 C -0.056 4.056 21 O -0.144 6.144 22 C 0.184 3.816 23 O -0.185 6.185 24 N -0.184 5.184 25 C -0.011 4.011 26 C -0.162 4.162 27 C -0.223 4.223 28 C -0.192 4.192 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.190 0.810 35 H 0.067 0.933 36 H 0.225 0.775 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.280 0.720 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.111 -22.239 -1.183 22.850 hybrid contribution -0.410 -1.075 -2.525 2.775 sum 4.701 -23.314 -3.709 24.071 Atomic orbital electron populations 1.21995 0.93251 1.01514 1.03802 1.20112 0.93520 0.92672 0.82404 1.21095 0.99510 0.87358 0.90313 1.42602 1.62023 1.11045 1.23842 1.19086 1.25608 0.85584 1.05661 0.89304 1.24639 1.00933 0.95853 0.98101 1.69703 1.50248 1.09749 1.28980 0.86568 0.81061 0.79183 0.81916 1.21214 1.21953 1.20548 1.45940 1.07125 1.56987 1.27208 1.17576 0.82639 0.79885 0.85392 1.90866 1.54266 1.43026 1.47370 1.19368 0.89565 1.02104 0.97061 1.21300 0.99461 0.95959 0.93205 1.20875 0.93969 1.00566 0.97361 1.19953 0.90543 0.99575 0.98106 1.19781 0.79849 1.06579 0.99402 1.84477 1.22854 1.66517 1.40517 1.23424 0.88275 0.89743 0.80124 1.85217 1.09452 1.77944 1.45902 1.71114 0.94546 1.24930 1.27861 1.19286 0.92934 0.97910 0.90998 1.22497 1.04220 0.90280 0.99229 1.22970 0.98053 0.99772 1.01516 1.22900 0.92247 1.01878 1.02208 0.90517 0.91598 0.92580 0.95006 0.92207 0.80986 0.93303 0.77488 0.84220 0.83562 0.84359 0.72048 0.87237 0.89322 0.89395 0.89518 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.20 37.16 0.30 -1.71 16 2 C 0.20 3.18 0.55 -131.82 -0.07 3.10 16 3 C 0.14 3.08 4.83 -4.04 -0.02 3.06 16 4 N -0.75 -18.45 4.98 -59.91 -0.30 -18.75 16 5 C -0.23 -6.82 10.47 -15.06 -0.16 -6.98 16 6 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 7 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 8 N -0.94 -30.57 13.97 55.49 0.78 -29.80 16 9 Si 0.88 22.48 27.74 -169.99 -4.71 17.77 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 12 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 13 N -0.72 -10.93 4.13 -48.70 -0.20 -11.13 16 14 C 0.56 9.99 5.02 -12.56 -0.06 9.92 16 15 O -0.48 -10.37 11.98 5.27 0.06 -10.30 16 16 C -0.08 -1.21 5.90 -104.73 -0.62 -1.83 16 17 C -0.08 -0.91 9.53 -39.18 -0.37 -1.28 16 18 C -0.11 -1.00 10.01 -39.60 -0.40 -1.39 16 19 C -0.06 -0.63 10.04 -39.47 -0.40 -1.02 16 20 C -0.01 -0.09 7.41 -38.73 -0.29 -0.38 16 21 O -0.25 -3.03 10.79 -20.54 -0.22 -3.25 16 22 C 0.43 5.92 9.54 52.35 0.50 6.42 16 23 O -0.39 -3.70 13.62 -40.29 -0.55 -4.25 16 24 N -0.44 -7.97 10.65 -12.57 -0.13 -8.10 16 25 C 0.10 1.72 6.83 -84.44 -0.58 1.14 16 26 C -0.14 -2.07 4.82 -90.62 -0.44 -2.51 16 27 C -0.19 -2.18 9.68 -26.73 -0.26 -2.44 16 28 C -0.16 -2.22 8.30 -26.73 -0.22 -2.44 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.99 6.86 -51.93 -0.36 0.63 16 31 H 0.06 0.60 6.96 -51.93 -0.36 0.24 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.47 5.92 -51.93 -0.31 1.16 16 34 H 0.36 8.35 4.21 -40.82 -0.17 8.18 16 35 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 36 H 0.39 4.71 6.53 -40.82 -0.27 4.44 16 37 H 0.14 1.22 6.41 -52.49 -0.34 0.88 16 38 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.42 0.95 9.06 45.56 0.41 1.37 16 41 H 0.11 1.61 8.07 -51.93 -0.42 1.20 16 42 H 0.09 0.94 7.25 -51.93 -0.38 0.57 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 1.41 5.09 -51.93 -0.26 1.14 16 LS Contribution 366.63 15.07 5.52 5.52 Total: -1.00 -40.41 366.63 -7.50 -47.91 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -4.58 Total: 12.83 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.17 Total: 1.55 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: 0.14 Total: -67.77 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.71 Total: -17.81 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -40.41 -7.50 -47.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.362 kcal (2) G-P(sol) polarization free energy of solvation -40.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds