Wall clock time and date at job start Wed Apr 1 2020 04:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 N 1.46504 * 109.47191 * 300.00032 * 3 2 1 5 5 C 1.36933 * 119.99874 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00365 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99743 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00234 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47334 * 90.00135 * 9 7 5 11 11 H 1.48501 * 109.47066 * 210.00302 * 9 7 5 12 12 H 1.48500 * 109.46781 * 330.00198 * 9 7 5 13 13 N 1.46494 * 109.46867 * 239.99987 * 2 1 3 14 14 C 1.34779 * 119.99544 * 173.96740 * 13 2 1 15 15 O 1.21613 * 120.00725 * 5.27376 * 14 13 2 16 16 C 1.47335 * 119.99831 * 185.28039 * 14 13 2 17 17 C 1.39499 * 120.30501 * 359.71713 * 16 14 13 18 18 C 1.38050 * 120.21596 * 179.77744 * 17 16 14 19 19 C 1.38377 * 120.67459 * 0.46768 * 18 17 16 20 20 C 1.38389 * 120.25078 * 359.79270 * 19 18 17 21 21 O 1.35324 * 133.76561 * 179.97438 * 20 19 18 22 22 C 1.34320 * 108.11153 * 180.02562 * 21 20 19 23 23 O 1.35098 * 124.95866 * 179.97438 * 22 21 20 24 24 N 1.30854 * 110.07917 * 0.02562 * 22 21 20 25 25 C 1.35532 * 108.78214 * 359.97438 * 24 22 21 26 26 C 1.53002 * 109.46914 * 119.99728 * 2 1 3 27 27 C 1.52997 * 117.50018 * 54.46013 * 26 2 1 28 28 C 1.53004 * 117.49578 * 123.08478 * 26 2 1 29 29 H 1.08998 * 109.46914 * 299.99951 * 1 2 3 30 30 H 1.08997 * 109.47188 * 60.00045 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47628 * 59.99968 * 3 2 1 33 33 H 1.08996 * 109.47254 * 180.02562 * 3 2 1 34 34 H 0.96998 * 119.99416 * 359.97438 * 4 3 2 35 35 H 0.96996 * 119.99803 * 179.97438 * 8 7 5 36 36 H 0.96995 * 120.00303 * 353.96035 * 13 2 1 37 37 H 1.07999 * 119.89225 * 359.97438 * 17 16 14 38 38 H 1.07995 * 119.66302 * 180.26249 * 18 17 16 39 39 H 1.07995 * 119.87046 * 179.77759 * 19 18 17 40 40 H 0.96703 * 113.99882 * 0.02562 * 23 22 21 41 41 H 1.09002 * 115.56297 * 268.76572 * 26 2 1 42 42 H 1.09004 * 117.49816 * 359.97438 * 27 26 2 43 43 H 1.08994 * 117.50040 * 214.97546 * 27 26 2 44 44 H 1.09000 * 117.49495 * 145.02096 * 28 26 2 45 45 H 1.09001 * 117.49579 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8828 3.4440 -1.4131 6 1 2.5037 3.9688 -0.7023 7 6 1.4196 4.0985 -2.5463 8 7 1.7376 5.3586 -2.7545 9 14 0.3451 3.1908 -3.7755 10 1 -1.0824 3.3544 -3.4008 11 1 0.5674 3.7485 -5.1338 12 1 0.6963 1.7480 -3.7693 13 7 2.0183 -0.6906 -1.1961 14 6 3.3373 -0.7085 -1.4726 15 8 4.1310 -0.2356 -0.6818 16 6 3.8178 -1.3011 -2.7331 17 6 2.9136 -1.8506 -3.6422 18 6 3.3654 -2.4012 -4.8248 19 6 4.7168 -2.4254 -5.1213 20 6 5.6349 -1.8917 -4.2340 21 8 6.9827 -1.7707 -4.2415 22 6 7.3536 -1.1615 -3.1033 23 8 8.6277 -0.8709 -2.7605 24 7 6.3008 -0.8916 -2.3745 25 6 5.1951 -1.3239 -3.0283 26 6 2.0400 -0.7212 1.2493 27 6 1.5317 -2.1420 1.5018 28 6 2.9739 -1.9156 1.0437 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 0.9943 1.6615 -1.8348 35 1 1.4142 5.8158 -3.5465 36 1 1.3924 -1.1350 -1.7891 37 1 1.8564 -1.8424 -3.4216 38 1 2.6572 -2.8204 -5.5241 39 1 5.0562 -2.8626 -6.0486 40 1 9.2833 -1.1420 -3.4175 41 1 2.2167 -0.0880 2.1187 42 1 0.8337 -2.5629 0.7780 43 1 1.3740 -2.4436 2.5372 44 1 3.7650 -2.0681 1.7780 45 1 3.2247 -2.1877 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269626472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:06 Heat of formation + Delta-G solvation = 0.774895 kcal Electronic energy + Delta-G solvation = -31382.112823 eV Core-core repulsion = 27174.778029 eV Total energy + Delta-G solvation = -4207.334794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.42534 -41.70600 -39.66915 -38.77760 -37.91317 -36.73495 -35.85083 -34.96623 -33.59296 -32.25503 -30.89421 -30.46011 -27.89715 -25.57912 -25.15542 -24.32978 -23.96060 -23.09280 -22.80811 -21.72194 -20.86221 -20.43848 -19.69803 -19.11619 -18.40122 -18.37052 -17.36952 -17.17763 -16.77550 -16.49078 -16.19308 -15.72005 -15.61383 -15.29370 -15.07533 -14.99398 -14.84502 -14.76585 -14.66093 -13.79273 -13.61596 -13.40873 -13.31480 -13.22657 -13.15329 -12.94731 -12.80410 -12.35918 -12.29140 -12.16276 -12.09254 -11.94608 -11.80808 -11.59987 -11.23378 -11.05883 -10.95891 -10.41450 -10.02004 -9.86658 -9.35307 -9.23876 -8.02029 -5.35094 -0.65523 0.01563 0.80048 1.31576 1.33261 1.41443 1.47976 1.87468 2.06922 2.15694 2.49067 2.77059 2.95886 3.27754 3.37077 3.54543 3.64429 3.82537 3.93495 3.95961 3.97574 4.00562 4.05954 4.26438 4.29172 4.36640 4.55653 4.61295 4.75361 4.82500 4.86909 4.92154 4.97342 4.99678 5.09912 5.11842 5.18272 5.21410 5.29929 5.32468 5.35455 5.52820 5.68697 5.75675 5.82577 6.20481 6.67737 6.73752 7.08069 7.43857 7.81361 8.08085 9.20615 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.004786 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.148094 B = 5848.815940 C = 7189.872693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.208 3.792 3 C 0.145 3.855 4 N -0.740 5.740 5 C -0.234 4.234 6 H 0.038 0.962 7 C -0.071 4.071 8 N -0.990 5.990 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.297 1.297 12 H -0.242 1.242 13 N -0.707 5.707 14 C 0.554 3.446 15 O -0.537 6.537 16 C -0.122 4.122 17 C -0.068 4.068 18 C -0.096 4.096 19 C -0.048 4.048 20 C -0.024 4.024 21 O -0.234 6.234 22 C 0.442 3.558 23 O -0.384 6.384 24 N -0.511 5.511 25 C 0.063 3.937 26 C -0.163 4.163 27 C -0.142 4.142 28 C -0.171 4.171 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.409 0.591 37 H 0.170 0.830 38 H 0.199 0.801 39 H 0.179 0.821 40 H 0.450 0.550 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -27.696 -5.866 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.122 3.878 3 C 0.018 3.982 4 N -0.387 5.387 5 C -0.365 4.365 6 H 0.056 0.944 7 C -0.262 4.262 8 N -0.640 5.640 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.224 1.224 12 H -0.166 1.166 13 N -0.362 5.362 14 C 0.342 3.658 15 O -0.413 6.413 16 C -0.127 4.127 17 C -0.087 4.087 18 C -0.114 4.114 19 C -0.066 4.066 20 C -0.073 4.073 21 O -0.131 6.131 22 C 0.193 3.807 23 O -0.189 6.189 24 N -0.258 5.258 25 C -0.050 4.050 26 C -0.182 4.182 27 C -0.178 4.178 28 C -0.208 4.208 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.247 0.753 37 H 0.188 0.812 38 H 0.216 0.784 39 H 0.197 0.803 40 H 0.313 0.687 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.022 -26.620 -4.165 27.020 hybrid contribution 0.734 0.318 -1.569 1.761 sum 2.757 -26.303 -5.734 27.061 Atomic orbital electron populations 1.21996 0.90493 1.04108 1.03443 1.19907 0.95253 0.89034 0.83581 1.21097 0.97220 0.91239 0.88686 1.42393 1.61961 1.09267 1.25058 1.18973 1.24834 0.87720 1.04969 0.94421 1.25650 1.03024 0.96896 1.00607 1.69936 1.52053 1.12152 1.29909 0.85306 0.78969 0.79429 0.77559 1.19295 1.22368 1.16636 1.45798 1.06759 1.56434 1.27175 1.18081 0.82897 0.79021 0.85822 1.90836 1.55698 1.45512 1.49292 1.19477 0.90240 1.05386 0.97593 1.21762 1.00162 0.93951 0.92824 1.21515 0.94371 0.98624 0.96846 1.20623 0.90331 0.97329 0.98353 1.20313 0.80258 1.07417 0.99304 1.84472 1.22736 1.66203 1.39654 1.23348 0.88793 0.88634 0.79926 1.85213 1.08692 1.77678 1.47332 1.70953 0.96536 1.27686 1.30622 1.19668 0.93223 0.99466 0.92635 1.22395 1.06060 0.91456 0.98326 1.23083 0.95764 0.95817 1.03165 1.22818 0.93874 1.02642 1.01515 0.90391 0.92489 0.88419 0.95810 0.96306 0.79695 0.93411 0.75288 0.81219 0.78424 0.80347 0.68699 0.88533 0.86858 0.87443 0.90698 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.20 71.98 0.59 -2.85 16 2 C 0.21 6.55 0.55 3.61 0.00 6.55 16 3 C 0.14 6.49 4.83 86.38 0.42 6.90 16 4 N -0.74 -37.17 4.98 -343.45 -1.71 -38.88 16 5 C -0.23 -14.60 10.47 84.04 0.88 -13.72 16 6 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 7 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 8 N -0.99 -66.94 13.97 21.65 0.30 -66.64 16 9 Si 0.96 45.80 27.74 68.60 1.90 47.71 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.24 -9.95 6.52 99.48 0.65 -9.30 16 13 N -0.71 -20.61 4.13 -426.24 -1.76 -22.37 16 14 C 0.55 20.34 5.02 86.64 0.44 20.78 16 15 O -0.54 -25.04 11.98 -4.07 -0.05 -25.08 16 16 C -0.12 -3.84 5.90 -19.93 -0.12 -3.96 16 17 C -0.07 -1.30 9.53 22.53 0.21 -1.09 16 18 C -0.10 -1.23 10.01 22.26 0.22 -1.00 16 19 C -0.05 -0.75 10.04 22.34 0.22 -0.53 16 20 C -0.02 -0.61 7.41 22.82 0.17 -0.44 16 21 O -0.23 -5.67 10.79 9.23 0.10 -5.57 16 22 C 0.44 12.64 9.54 130.39 1.24 13.88 16 23 O -0.38 -7.67 13.62 -61.46 -0.84 -8.50 16 24 N -0.51 -19.93 10.65 -421.87 -4.49 -24.42 16 25 C 0.06 2.18 6.83 39.73 0.27 2.46 16 26 C -0.16 -4.72 4.82 -10.79 -0.05 -4.77 16 27 C -0.14 -2.90 9.68 30.60 0.30 -2.60 16 28 C -0.17 -4.95 8.30 30.60 0.25 -4.69 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.49 6.86 -2.39 -0.02 1.48 16 31 H 0.10 1.56 6.96 -2.39 -0.02 1.54 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.02 1.02 5.92 -2.39 -0.01 1.00 16 34 H 0.37 16.65 4.21 -92.71 -0.39 16.26 16 35 H 0.26 16.41 8.31 -92.71 -0.77 15.63 16 36 H 0.41 8.40 6.53 -92.71 -0.61 7.79 16 37 H 0.17 2.04 6.41 -2.91 -0.02 2.03 16 38 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.45 1.83 9.06 -74.06 -0.67 1.16 16 41 H 0.10 2.99 8.07 -2.39 -0.02 2.97 16 42 H 0.11 1.80 7.25 -2.38 -0.02 1.78 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.08 2.53 5.09 -2.39 -0.01 2.52 16 Total: -1.00 -99.68 366.63 -1.66 -101.34 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.64 Total: 31.47 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.52 Total: 10.95 kcal Atomic # 7 Polarization: -144.65 SS G_CDS: -7.66 Total: -152.31 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.79 Total: -39.15 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.71 kcal Total: -99.68 -1.66 -101.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.116 kcal (2) G-P(sol) polarization free energy of solvation -99.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds