Wall clock time and date at job start Wed Apr 1 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52994 * 109.47150 * 2 1 4 4 C 1.53006 * 109.46635 * 120.00167 * 2 1 3 5 5 H 1.08994 * 109.47567 * 60.00055 * 4 2 1 6 6 C 1.52995 * 109.47104 * 299.99583 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21532 * 120.00045 * 0.02562 * 8 7 6 10 10 C 1.48011 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.39459 * 119.92350 * 359.97438 * 10 8 7 12 12 C 1.38446 * 120.30736 * 180.02562 * 11 10 8 13 13 C 1.38597 * 119.90008 * 359.97438 * 12 11 10 14 14 C 1.40987 * 120.06601 * 0.02562 * 13 12 11 15 15 C 1.38434 * 119.95082 * 359.76270 * 14 13 12 16 16 C 1.47822 * 105.89349 * 180.02562 * 14 13 12 17 17 O 1.21450 * 125.69597 * 180.02562 * 16 14 13 18 18 N 1.34503 * 108.62059 * 0.02562 * 16 14 13 19 19 C 1.34515 * 111.10806 * 359.97438 * 18 16 14 20 20 O 1.21425 * 125.72515 * 180.02562 * 19 18 16 21 21 N 1.46505 * 109.46692 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.08999 * 109.46647 * 60.00209 * 1 2 3 31 31 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46796 * 299.99865 * 1 2 3 33 33 H 1.08991 * 109.46870 * 239.99631 * 2 1 3 34 34 H 1.08995 * 109.47310 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47190 * 300.00008 * 3 2 1 36 36 H 1.09002 * 109.47089 * 59.99980 * 3 2 1 37 37 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 38 38 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 39 39 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 40 40 H 1.07992 * 119.84878 * 359.97438 * 11 10 8 41 41 H 1.08000 * 120.05255 * 180.02562 * 12 11 10 42 42 H 1.08005 * 120.18650 * 180.22855 * 15 14 13 43 43 H 0.97002 * 124.45134 * 180.02562 * 18 16 14 44 44 H 0.97000 * 119.99792 * 94.99575 * 21 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5301 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6917 8 6 1.8053 -0.1445 4.9152 9 8 1.0418 0.7942 5.0288 10 6 2.3958 -0.7681 6.1206 11 6 3.2713 -1.8456 5.9885 12 6 3.8279 -2.4353 7.1106 13 6 3.5147 -1.9531 8.3717 14 6 2.6303 -0.8641 8.5120 15 6 2.0782 -0.2730 7.3886 16 6 2.5220 -0.6152 9.9651 17 8 1.8470 0.2487 10.4877 18 7 3.2957 -1.5051 10.6121 19 6 3.9142 -2.3287 9.7469 20 8 4.6727 -3.2291 10.0439 21 7 3.5051 -0.7219 1.2490 22 6 4.1892 -1.6937 0.5688 23 1 3.6488 -2.4595 0.0322 24 6 5.5773 -1.6908 0.5638 25 7 6.2359 -0.7573 1.2173 26 14 6.5106 -3.0120 -0.3705 27 1 6.7522 -2.5565 -1.7631 28 1 7.8111 -3.2670 0.2995 29 1 5.7105 -4.2629 -0.3905 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.8185 1.0502 2.4548 38 1 0.4437 -0.0769 2.5444 39 1 2.7232 -1.3671 3.6010 40 1 3.5156 -2.2223 5.0063 41 1 4.5057 -3.2692 7.0035 42 1 1.4032 0.5638 7.4914 43 1 3.3942 -1.5479 11.5762 44 1 3.9904 -0.0338 1.7306 45 1 7.2059 -0.7555 1.2141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271922235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:53 Heat of formation + Delta-G solvation = -50.437451 kcal Electronic energy + Delta-G solvation = -29556.109807 eV Core-core repulsion = 25346.554279 eV Total energy + Delta-G solvation = -4209.555528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55391 -40.06261 -38.98866 -38.24222 -37.31609 -35.97859 -34.07090 -33.33160 -31.74634 -31.47999 -30.43220 -27.72326 -26.69158 -25.65608 -24.92476 -23.73268 -22.98487 -22.44602 -20.79201 -20.52166 -19.00426 -18.32606 -17.92134 -17.54509 -17.18032 -16.76783 -16.29467 -15.87131 -15.52788 -15.31546 -14.98594 -14.66155 -14.37054 -14.35788 -14.30531 -13.84583 -13.58859 -13.42794 -13.24559 -13.05413 -13.02725 -12.59723 -12.16529 -12.08012 -11.52665 -11.23887 -11.06696 -10.98376 -10.95868 -10.80336 -10.78910 -10.70461 -10.43129 -10.26995 -10.00913 -9.81038 -9.76028 -9.61173 -9.56739 -9.03425 -8.78850 -7.13340 -5.91391 -3.21867 -0.45096 0.54765 1.43988 2.18934 2.56611 2.75289 3.05753 3.33504 3.39631 3.41596 3.42383 3.51173 3.89040 4.22000 4.45643 4.53742 4.68863 4.82261 4.93641 5.25499 5.29310 5.40888 5.42555 5.47722 5.54145 5.55746 5.65719 5.69076 5.72761 5.81378 5.88099 6.01701 6.03133 6.09256 6.17749 6.26664 6.31081 6.34735 6.50825 6.64857 6.73308 6.77342 6.94703 6.97823 7.35135 7.57594 7.66240 8.25072 8.27073 9.38344 9.91628 10.27593 11.29979 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.002963 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.152970 B = 9449.060268 C =11596.976098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.109 3.891 7 N -0.701 5.701 8 C 0.551 3.449 9 O -0.539 6.539 10 C -0.101 4.101 11 C -0.054 4.054 12 C -0.045 4.045 13 C -0.126 4.126 14 C -0.155 4.155 15 C 0.012 3.988 16 C 0.582 3.418 17 O -0.461 6.461 18 N -0.680 5.680 19 C 0.579 3.421 20 O -0.460 6.460 21 N -0.720 5.720 22 C -0.245 4.245 23 H 0.071 0.929 24 C -0.007 4.007 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.410 0.590 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.430 0.570 44 H 0.386 0.614 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -1.955 11.699 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.015 4.015 7 N -0.353 5.353 8 C 0.336 3.664 9 O -0.418 6.418 10 C -0.105 4.105 11 C -0.073 4.073 12 C -0.064 4.064 13 C -0.130 4.130 14 C -0.159 4.159 15 C -0.008 4.008 16 C 0.370 3.630 17 O -0.332 6.332 18 N -0.347 5.347 19 C 0.367 3.633 20 O -0.331 6.331 21 N -0.362 5.362 22 C -0.376 4.376 23 H 0.089 0.911 24 C -0.203 4.203 25 N -0.575 5.575 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.272 0.728 44 H 0.220 0.780 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.793 -1.460 11.985 14.936 hybrid contribution 1.235 -0.816 -0.083 1.483 sum -7.557 -2.276 11.902 14.281 Atomic orbital electron populations 1.21934 0.96707 1.01004 1.01090 1.21720 0.93613 0.97189 1.00748 1.21776 1.02635 0.95588 0.99872 1.20525 0.86445 0.96720 0.90437 0.92756 1.21924 0.97471 0.98171 0.83928 1.45940 1.47947 1.36228 1.05138 1.18031 0.81674 0.83443 0.83205 1.90778 1.36260 1.28133 1.86662 1.20287 0.99010 0.97189 0.93998 1.21839 0.92492 0.92959 1.00003 1.20769 0.97574 0.99056 0.88958 1.20643 0.99961 0.98227 0.94137 1.20315 1.02315 0.99609 0.93649 1.20768 0.94667 0.96917 0.88441 1.18236 0.77733 0.79790 0.87221 1.90866 1.37341 1.30681 1.74268 1.44423 1.45106 1.33098 1.12057 1.18358 0.78647 0.80311 0.85975 1.90860 1.31482 1.27688 1.83065 1.42468 0.98679 1.33520 1.61546 1.19198 0.88895 1.04623 1.24870 0.91116 1.24716 0.96417 0.98588 1.00613 1.69653 1.07009 1.34820 1.46063 0.86259 0.79518 0.81247 0.79511 1.21764 1.21812 1.20749 0.93474 0.93192 0.92909 0.90873 0.91324 0.94202 0.93540 0.90936 0.91200 0.75203 0.82815 0.83084 0.82722 0.72781 0.78013 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.84 37.16 0.33 -1.57 16 2 C -0.11 -1.73 2.91 -90.61 -0.26 -1.99 16 3 C -0.14 -2.23 8.69 37.15 0.32 -1.91 16 4 C 0.17 2.80 2.27 -67.93 -0.15 2.65 16 5 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 6 C 0.11 1.64 4.51 -4.04 -0.02 1.62 16 7 N -0.70 -10.07 5.34 -61.20 -0.33 -10.39 16 8 C 0.55 8.01 7.78 -12.26 -0.10 7.91 16 9 O -0.54 -9.34 16.34 5.34 0.09 -9.25 16 10 C -0.10 -1.21 5.88 -104.86 -0.62 -1.82 16 11 C -0.05 -0.55 9.54 -39.05 -0.37 -0.92 16 12 C -0.04 -0.42 10.08 -39.37 -0.40 -0.82 16 13 C -0.13 -1.27 6.41 -104.70 -0.67 -1.94 16 14 C -0.16 -1.65 6.39 -104.86 -0.67 -2.32 16 15 C 0.01 0.13 9.63 -38.93 -0.37 -0.24 16 16 C 0.58 6.08 8.45 -12.46 -0.11 5.97 16 17 O -0.46 -5.95 18.04 5.41 0.10 -5.85 16 18 N -0.68 -5.67 5.76 -13.19 -0.08 -5.75 16 19 C 0.58 5.82 8.47 -12.36 -0.10 5.72 16 20 O -0.46 -5.70 18.04 5.43 0.10 -5.60 16 21 N -0.72 -15.00 3.80 -53.42 -0.20 -15.20 16 22 C -0.24 -5.86 9.93 -15.06 -0.15 -6.01 16 23 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -25.22 13.06 55.49 0.72 -24.50 16 26 Si 0.90 20.51 29.55 -169.99 -5.02 15.48 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.28 7.60 -51.93 -0.39 0.89 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.69 6.32 -51.93 -0.33 0.36 16 37 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 38 H 0.07 0.98 6.71 -51.93 -0.35 0.64 16 39 H 0.41 5.73 6.15 -40.82 -0.25 5.48 16 40 H 0.15 1.46 6.36 -52.49 -0.33 1.13 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.16 1.78 7.65 -52.48 -0.40 1.38 16 43 H 0.43 2.44 8.96 -40.82 -0.37 2.08 16 44 H 0.39 8.82 7.80 -40.82 -0.32 8.50 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -30.04 381.62 -7.79 -37.82 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.48 Total: 13.42 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -3.44 Total: 4.05 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.12 Total: -55.84 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.28 Total: -20.70 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.04 -7.79 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271922235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds