Wall clock time and date at job start Wed Apr 1 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52994 * 109.47150 * 2 1 4 4 C 1.53006 * 109.46635 * 120.00167 * 2 1 3 5 5 H 1.08994 * 109.47567 * 60.00055 * 4 2 1 6 6 C 1.52995 * 109.47104 * 299.99583 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21532 * 120.00045 * 0.02562 * 8 7 6 10 10 C 1.48011 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.39459 * 119.92350 * 359.97438 * 10 8 7 12 12 C 1.38446 * 120.30736 * 180.02562 * 11 10 8 13 13 C 1.38597 * 119.90008 * 359.97438 * 12 11 10 14 14 C 1.40987 * 120.06601 * 0.02562 * 13 12 11 15 15 C 1.38434 * 119.95082 * 359.76270 * 14 13 12 16 16 C 1.47822 * 105.89349 * 180.02562 * 14 13 12 17 17 O 1.21450 * 125.69597 * 180.02562 * 16 14 13 18 18 N 1.34503 * 108.62059 * 0.02562 * 16 14 13 19 19 C 1.34515 * 111.10806 * 359.97438 * 18 16 14 20 20 O 1.21425 * 125.72515 * 180.02562 * 19 18 16 21 21 N 1.46505 * 109.46692 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.08999 * 109.46647 * 60.00209 * 1 2 3 31 31 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46796 * 299.99865 * 1 2 3 33 33 H 1.08991 * 109.46870 * 239.99631 * 2 1 3 34 34 H 1.08995 * 109.47310 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47190 * 300.00008 * 3 2 1 36 36 H 1.09002 * 109.47089 * 59.99980 * 3 2 1 37 37 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 38 38 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 39 39 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 40 40 H 1.07992 * 119.84878 * 359.97438 * 11 10 8 41 41 H 1.08000 * 120.05255 * 180.02562 * 12 11 10 42 42 H 1.08005 * 120.18650 * 180.22855 * 15 14 13 43 43 H 0.97002 * 124.45134 * 180.02562 * 18 16 14 44 44 H 0.97000 * 119.99792 * 94.99575 * 21 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5301 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6917 8 6 1.8053 -0.1445 4.9152 9 8 1.0418 0.7942 5.0288 10 6 2.3958 -0.7681 6.1206 11 6 3.2713 -1.8456 5.9885 12 6 3.8279 -2.4353 7.1106 13 6 3.5147 -1.9531 8.3717 14 6 2.6303 -0.8641 8.5120 15 6 2.0782 -0.2730 7.3886 16 6 2.5220 -0.6152 9.9651 17 8 1.8470 0.2487 10.4877 18 7 3.2957 -1.5051 10.6121 19 6 3.9142 -2.3287 9.7469 20 8 4.6727 -3.2291 10.0439 21 7 3.5051 -0.7219 1.2490 22 6 4.1892 -1.6937 0.5688 23 1 3.6488 -2.4595 0.0322 24 6 5.5773 -1.6908 0.5638 25 7 6.2359 -0.7573 1.2173 26 14 6.5106 -3.0120 -0.3705 27 1 6.7522 -2.5565 -1.7631 28 1 7.8111 -3.2670 0.2995 29 1 5.7105 -4.2629 -0.3905 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.8185 1.0502 2.4548 38 1 0.4437 -0.0769 2.5444 39 1 2.7232 -1.3671 3.6010 40 1 3.5156 -2.2223 5.0063 41 1 4.5057 -3.2692 7.0035 42 1 1.4032 0.5638 7.4914 43 1 3.3942 -1.5479 11.5762 44 1 3.9904 -0.0338 1.7306 45 1 7.2059 -0.7555 1.2141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271922235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:52 Heat of formation + Delta-G solvation = -71.303791 kcal Electronic energy + Delta-G solvation = -29557.014639 eV Core-core repulsion = 25346.554279 eV Total energy + Delta-G solvation = -4210.460360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.40274 -41.17691 -39.89806 -39.30285 -38.58373 -36.86930 -35.31422 -35.02018 -32.69659 -32.34818 -32.05920 -29.06085 -27.88609 -26.64627 -26.03667 -25.14938 -24.06265 -23.66807 -21.70007 -21.53820 -20.23688 -19.29076 -19.17042 -18.86408 -18.30587 -17.61393 -17.47149 -16.90509 -16.69488 -16.46107 -16.19311 -15.88834 -15.51706 -15.37035 -15.29137 -15.17221 -14.92715 -14.83885 -14.36780 -14.19038 -14.12476 -13.66566 -13.59363 -13.01947 -12.85486 -12.75415 -12.61918 -12.47859 -12.15163 -12.06157 -11.86070 -11.82243 -11.71112 -11.63401 -11.46626 -11.24564 -11.09160 -10.80874 -10.52231 -10.42310 -9.98969 -8.92401 -7.85391 -5.12753 -1.32660 -0.31995 0.55948 1.40519 1.53046 1.56229 1.61947 1.68942 1.78547 2.02845 2.48101 2.55006 2.62661 3.04341 3.38890 3.47528 3.55455 3.80832 3.91260 3.94543 3.96897 4.10279 4.27459 4.38225 4.49595 4.57454 4.59923 4.66370 4.74624 4.80107 4.89025 4.91771 4.97621 5.00808 5.14500 5.17692 5.19172 5.28465 5.31622 5.36386 5.47810 5.61206 5.65459 5.71444 5.92805 6.35074 6.49552 6.58341 7.10489 7.44081 8.15799 8.40878 9.36658 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.002963 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.152970 B = 9449.060268 C =11596.976098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.171 3.829 5 H 0.060 0.940 6 C 0.117 3.883 7 N -0.700 5.700 8 C 0.553 3.447 9 O -0.571 6.571 10 C -0.112 4.112 11 C -0.045 4.045 12 C -0.037 4.037 13 C -0.123 4.123 14 C -0.158 4.158 15 C 0.010 3.990 16 C 0.591 3.409 17 O -0.486 6.486 18 N -0.663 5.663 19 C 0.589 3.411 20 O -0.480 6.480 21 N -0.725 5.725 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.062 4.062 25 N -0.962 5.962 26 Si 0.957 3.043 27 H -0.300 1.300 28 H -0.302 1.302 29 H -0.268 1.268 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.149 0.851 43 H 0.444 0.556 44 H 0.374 0.626 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 -3.194 11.906 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.193 4.193 4 C 0.062 3.938 5 H 0.078 0.922 6 C -0.007 4.007 7 N -0.351 5.351 8 C 0.340 3.660 9 O -0.452 6.452 10 C -0.115 4.115 11 C -0.064 4.064 12 C -0.055 4.055 13 C -0.127 4.127 14 C -0.162 4.162 15 C -0.010 4.010 16 C 0.379 3.621 17 O -0.358 6.358 18 N -0.331 5.331 19 C 0.377 3.623 20 O -0.352 6.352 21 N -0.365 5.365 22 C -0.359 4.359 23 H 0.094 0.906 24 C -0.255 4.255 25 N -0.613 5.613 26 Si 0.788 3.212 27 H -0.228 1.228 28 H -0.229 1.229 29 H -0.193 1.193 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.251 0.749 40 H 0.180 0.820 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.289 0.711 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.820 -2.731 12.194 15.893 hybrid contribution 1.466 -0.426 -0.154 1.534 sum -8.354 -3.158 12.040 14.990 Atomic orbital electron populations 1.21853 0.93874 1.02079 1.02128 1.21618 0.95930 0.96402 0.98972 1.21707 1.00287 0.96223 1.01082 1.20670 0.83985 0.97431 0.91723 0.92167 1.21794 0.98254 0.97200 0.83431 1.45903 1.47899 1.36182 1.05067 1.18338 0.81065 0.82907 0.83735 1.90758 1.37767 1.29560 1.87112 1.20071 1.00208 0.98210 0.93004 1.21917 0.91587 0.92106 1.00747 1.20992 0.97175 0.99171 0.88211 1.20742 0.99536 0.97834 0.94555 1.20281 1.02518 0.99842 0.93559 1.20708 0.94778 0.96916 0.88607 1.18168 0.77315 0.79450 0.87163 1.90863 1.38528 1.31814 1.74644 1.44232 1.44072 1.32038 1.12733 1.18255 0.78124 0.79898 0.86007 1.90865 1.32428 1.28581 1.83293 1.42540 1.00432 1.32499 1.60992 1.19499 0.88991 1.04365 1.23091 0.90579 1.25282 0.97442 1.00488 1.02328 1.69787 1.06416 1.36756 1.48331 0.85391 0.78157 0.79950 0.77688 1.22770 1.22880 1.19318 0.92263 0.92127 0.92080 0.92854 0.94793 0.92681 0.92665 0.92195 0.89600 0.74905 0.82035 0.80852 0.83289 0.71146 0.79327 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.84 71.99 0.64 -2.58 16 2 C -0.11 -3.21 2.91 -10.79 -0.03 -3.24 16 3 C -0.14 -4.19 8.69 71.98 0.63 -3.57 16 4 C 0.17 5.45 2.27 44.99 0.10 5.55 16 5 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 6 C 0.12 3.39 4.51 86.38 0.39 3.78 16 7 N -0.70 -19.52 5.34 -465.82 -2.49 -22.00 16 8 C 0.55 15.79 7.78 86.84 0.68 16.47 16 9 O -0.57 -19.69 16.34 -3.81 -0.06 -19.75 16 10 C -0.11 -2.57 5.88 -20.02 -0.12 -2.69 16 11 C -0.04 -0.84 9.54 22.61 0.22 -0.63 16 12 C -0.04 -0.61 10.08 22.41 0.23 -0.39 16 13 C -0.12 -2.25 6.41 -19.92 -0.13 -2.38 16 14 C -0.16 -3.18 6.39 -20.02 -0.13 -3.31 16 15 C 0.01 0.21 9.63 22.69 0.22 0.43 16 16 C 0.59 11.67 8.45 86.82 0.73 12.41 16 17 O -0.49 -12.24 18.04 -3.56 -0.06 -12.30 16 18 N -0.66 -9.98 5.76 -432.58 -2.49 -12.47 16 19 C 0.59 10.75 8.47 86.89 0.74 11.48 16 20 O -0.48 -10.98 18.04 -3.48 -0.06 -11.04 16 21 N -0.72 -29.96 3.80 -322.93 -1.23 -31.19 16 22 C -0.23 -10.75 9.93 84.04 0.83 -9.92 16 23 H 0.08 3.48 7.83 -2.91 -0.02 3.46 16 24 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 25 N -0.96 -53.06 13.06 21.65 0.28 -52.78 16 26 Si 0.96 42.15 29.55 68.60 2.03 44.18 16 27 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.30 6.54 -2.39 -0.02 1.29 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.59 6.32 -2.39 -0.02 1.57 16 37 H 0.06 1.91 6.17 -2.38 -0.01 1.90 16 38 H 0.09 2.25 6.71 -2.39 -0.02 2.23 16 39 H 0.41 11.13 6.15 -92.71 -0.57 10.56 16 40 H 0.16 2.80 6.36 -2.91 -0.02 2.78 16 41 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.15 3.47 7.65 -2.91 -0.02 3.45 16 43 H 0.44 4.27 8.96 -92.71 -0.83 3.44 16 44 H 0.37 17.31 7.80 -92.71 -0.72 16.58 16 45 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 Total: -1.00 -64.08 381.62 0.33 -63.74 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -1.04 Total: 34.90 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.46 Total: 18.73 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.92 Total: -118.44 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.19 Total: -43.10 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -64.08 0.33 -63.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271922235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.560 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds