Wall clock time and date at job start Wed Apr 1 2020 04:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 N 1.46497 * 109.46815 * 119.99384 * 2 1 3 5 5 C 1.34783 * 119.99784 * 154.99999 * 4 2 1 6 6 O 1.21592 * 119.99655 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00005 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99808 * 180.02562 * 7 5 4 9 9 C 1.53144 * 109.40047 * 119.88104 * 8 7 5 10 10 C 1.54252 * 108.84423 * 66.05967 * 9 8 7 11 11 H 1.08996 * 112.33481 * 187.68869 * 10 9 8 12 12 C 1.54614 * 107.85758 * 312.48133 * 10 9 8 13 13 C 1.53791 * 104.85103 * 88.46660 * 12 10 9 14 14 C 1.54605 * 104.85062 * 359.97438 * 13 12 10 15 15 H 1.09003 * 112.69196 * 146.95974 * 14 13 12 16 16 C 1.53144 * 109.43421 * 240.08239 * 8 7 5 17 17 N 1.48294 * 104.26232 * 25.02855 * 14 13 12 18 18 S 1.65596 * 128.21650 * 138.35435 * 17 14 13 19 19 O 1.42104 * 106.40058 * 336.46481 * 18 17 14 20 20 O 1.42094 * 106.40735 * 203.54116 * 18 17 14 21 21 C 1.76200 * 107.21634 * 90.00113 * 18 17 14 22 22 H 1.08000 * 120.00225 * 0.27857 * 21 18 17 23 23 C 1.37878 * 119.99968 * 180.02562 * 21 18 17 24 24 N 1.31509 * 120.00223 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 119.99787 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.46708 * 90.00208 * 25 23 21 27 27 H 1.48500 * 109.46829 * 209.99700 * 25 23 21 28 28 H 1.48501 * 109.47267 * 330.00413 * 25 23 21 29 29 H 1.08997 * 109.47050 * 300.00453 * 1 2 3 30 30 H 1.09003 * 109.46782 * 60.00253 * 1 2 3 31 31 H 1.08995 * 109.46802 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47050 * 239.99547 * 2 1 3 33 33 H 1.09003 * 109.46678 * 299.99463 * 3 2 1 34 34 H 1.08992 * 109.47199 * 59.99794 * 3 2 1 35 35 H 1.08999 * 109.47002 * 180.02562 * 3 2 1 36 36 H 0.97000 * 120.00402 * 335.00299 * 4 2 1 37 37 H 0.97000 * 120.00181 * 0.02562 * 7 5 4 38 38 H 1.09004 * 109.43662 * 359.97438 * 8 7 5 39 39 H 1.08995 * 109.57184 * 185.97030 * 9 8 7 40 40 H 1.09002 * 109.56946 * 306.21514 * 9 8 7 41 41 H 1.08997 * 110.37957 * 207.17235 * 12 10 9 42 42 H 1.09007 * 110.37855 * 329.42205 * 12 10 9 43 43 H 1.09001 * 110.42986 * 241.10147 * 13 12 10 44 44 H 1.09001 * 110.23638 * 118.80119 * 13 12 10 45 45 H 1.09002 * 109.57200 * 174.04595 * 16 8 7 46 46 H 1.09000 * 109.57112 * 53.68684 * 16 8 7 47 47 H 0.97002 * 120.00030 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 3.2404 -1.2591 1.1945 6 8 3.9377 -1.1985 0.2002 7 7 3.6898 -1.8939 2.2952 8 6 5.0183 -2.5114 2.2935 9 6 5.8786 -1.8705 3.3864 10 6 5.2813 -2.2263 4.7633 11 1 5.7693 -1.6906 5.5775 12 6 3.7592 -1.9615 4.7027 13 6 3.1501 -3.2778 4.1913 14 6 4.3583 -4.2207 3.9878 15 1 4.1157 -5.2643 4.1883 16 6 4.8823 -4.0136 2.5584 17 7 5.3905 -3.6973 4.9149 18 16 6.4168 -4.5524 5.8937 19 8 5.7999 -5.8126 6.1185 20 8 6.7946 -3.6735 6.9444 21 6 7.8785 -4.8729 4.9634 22 1 7.9619 -4.5144 3.9480 23 6 8.9179 -5.5769 5.5334 24 7 8.8183 -6.0096 6.7712 25 14 10.4673 -5.9173 4.5468 26 1 11.4355 -4.8096 4.7480 27 1 11.0738 -7.1938 5.0027 28 1 10.1240 -6.0191 3.1056 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4426 -0.0005 36 1 1.4622 -0.7385 1.9895 37 1 3.1337 -1.9419 3.0885 38 1 5.4894 -2.3558 1.3229 39 1 6.8976 -2.2513 3.3192 40 1 5.8842 -0.7880 3.2588 41 1 3.3746 -1.7287 5.6956 42 1 3.5430 -1.1464 4.0119 43 1 2.6323 -3.1154 3.2460 44 1 2.4668 -3.6904 4.9335 45 1 5.8557 -4.4926 2.4532 46 1 4.1809 -4.4480 1.8460 47 1 9.5497 -6.5046 7.1723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278255647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:41 Heat of formation + Delta-G solvation = -48.879141 kcal Electronic energy + Delta-G solvation = -30500.842268 eV Core-core repulsion = 26426.798265 eV Total energy + Delta-G solvation = -4074.044003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69027 -39.31894 -36.15552 -35.26068 -34.21315 -33.98118 -33.08841 -32.23641 -31.14873 -31.09172 -29.29153 -27.49051 -26.12347 -23.98395 -23.38468 -21.59798 -20.86822 -20.48407 -20.44278 -18.93320 -18.33482 -17.61434 -16.38309 -16.24431 -15.29999 -15.19553 -15.01399 -14.56430 -14.29985 -14.23061 -14.07827 -13.80050 -13.54888 -13.38379 -13.15207 -12.95884 -12.77091 -12.63554 -12.44609 -12.40241 -12.09605 -12.00379 -11.65612 -11.31411 -11.29722 -11.22261 -11.18180 -10.93430 -10.67473 -10.59682 -10.58613 -10.31950 -10.23870 -10.19658 -10.18545 -9.93432 -9.25313 -9.24539 -8.90779 -8.55469 -8.23947 -6.70520 -5.32330 2.19160 2.75047 3.06884 3.13823 3.20354 3.27345 4.04805 4.27396 4.39949 4.60492 4.61380 4.73055 4.80195 4.88664 4.90205 4.98715 5.19072 5.19383 5.28296 5.33332 5.40627 5.43210 5.49032 5.50208 5.57434 5.64568 5.79544 5.83640 5.85608 5.89479 5.93555 6.02828 6.08527 6.18500 6.19106 6.26489 6.32070 6.39935 6.44941 6.45129 6.77003 6.95941 7.00469 7.33616 7.40972 7.98326 8.03628 8.67063 8.88839 10.23105 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.003184 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.063494 B = 8791.547360 C = 9414.848188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 C -0.164 4.164 4 N -0.747 5.747 5 C 0.690 3.310 6 O -0.598 6.598 7 N -0.759 5.759 8 C 0.161 3.839 9 C -0.143 4.143 10 C 0.155 3.845 11 H 0.105 0.895 12 C -0.160 4.160 13 C -0.161 4.161 14 C 0.155 3.845 15 H 0.104 0.896 16 C -0.143 4.143 17 N -1.015 6.015 18 S 2.730 3.270 19 O -1.002 7.002 20 O -1.002 7.002 21 C -1.017 5.017 22 H 0.103 0.897 23 C 0.133 3.867 24 N -0.847 5.847 25 Si 0.919 3.081 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.262 1.262 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.392 0.608 37 H 0.422 0.578 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 11.259 -10.449 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 C -0.223 4.223 4 N -0.403 5.403 5 C 0.391 3.609 6 O -0.477 6.477 7 N -0.435 5.435 8 C 0.056 3.944 9 C -0.183 4.183 10 C 0.048 3.952 11 H 0.123 0.877 12 C -0.200 4.200 13 C -0.200 4.200 14 C 0.048 3.952 15 H 0.122 0.878 16 C -0.183 4.183 17 N -0.848 5.848 18 S 2.832 3.168 19 O -0.993 6.993 20 O -0.993 6.993 21 C -1.151 5.151 22 H 0.121 0.879 23 C -0.085 4.085 24 N -0.477 5.477 25 Si 0.743 3.257 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.186 1.186 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.225 0.775 37 H 0.281 0.719 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.760 10.882 -10.162 20.965 hybrid contribution 0.774 -0.200 -0.259 0.840 sum -13.986 10.682 -10.421 20.453 Atomic orbital electron populations 1.22087 0.94408 1.02570 1.02763 1.20740 0.93321 0.92634 0.88366 1.22211 1.02393 0.95996 1.01681 1.45277 1.17458 1.60509 1.17092 1.16344 0.81610 0.78488 0.84482 1.90882 1.57060 1.65780 1.33980 1.48222 1.20647 1.58671 1.15983 1.20836 0.81756 0.91551 1.00261 1.22589 1.00488 1.00510 0.94702 1.21810 0.94197 0.82185 0.97030 0.87736 1.23169 0.97163 0.97473 1.02198 1.23179 0.98929 0.96179 1.01731 1.21684 0.86561 0.98331 0.88620 0.87786 1.22491 1.03274 0.95736 0.96820 1.60068 1.51235 1.14277 1.59198 1.00064 0.73151 0.71370 0.72171 1.93354 1.78543 1.42312 1.85058 1.93352 1.83605 1.67664 1.54669 1.30630 1.21576 1.48848 1.14016 0.87861 1.24748 0.99196 0.90342 0.94169 1.69891 1.34270 1.30980 1.12590 0.86181 0.80501 0.78393 0.80612 1.19211 1.20034 1.18578 0.92165 0.91014 0.91995 0.89519 0.91926 0.92695 0.91919 0.77501 0.71947 0.88234 0.89388 0.91122 0.90730 0.88734 0.88714 0.90717 0.89362 0.91073 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.38 37.16 0.35 -0.52 16 2 C 0.15 1.28 3.18 -67.92 -0.22 1.06 16 3 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 4 N -0.75 -6.70 5.08 -58.67 -0.30 -6.99 16 5 C 0.69 8.74 8.53 -86.91 -0.74 8.00 16 6 O -0.60 -10.04 15.33 5.28 0.08 -9.96 16 7 N -0.76 -8.73 2.78 -58.53 -0.16 -8.90 16 8 C 0.16 2.22 3.15 -67.78 -0.21 2.00 16 9 C -0.14 -2.06 5.51 -26.00 -0.14 -2.20 16 10 C 0.16 2.43 4.28 -65.45 -0.28 2.15 16 11 H 0.10 1.72 7.84 -51.93 -0.41 1.31 16 12 C -0.16 -1.87 5.73 -25.47 -0.15 -2.01 16 13 C -0.16 -1.87 5.74 -25.48 -0.15 -2.02 16 14 C 0.16 2.43 4.25 -65.77 -0.28 2.15 16 15 H 0.10 1.71 7.85 -51.93 -0.41 1.30 16 16 C -0.14 -2.06 5.49 -26.32 -0.14 -2.21 16 17 N -1.02 -19.42 3.16 -95.03 -0.30 -19.72 16 18 S 2.73 70.87 5.32 -107.50 -0.57 70.30 16 19 O -1.00 -28.76 17.51 -57.17 -1.00 -29.76 16 20 O -1.00 -28.77 17.51 -57.17 -1.00 -29.77 16 21 C -1.02 -27.36 9.75 30.60 0.30 -27.07 16 22 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 23 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 24 N -0.85 -24.78 13.19 55.43 0.73 -24.04 16 25 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.39 2.47 8.62 -40.82 -0.35 2.12 16 37 H 0.42 4.08 1.90 -66.24 -0.13 3.95 16 38 H 0.10 1.51 6.89 -51.93 -0.36 1.15 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.91 5.28 -51.92 -0.27 0.63 16 43 H 0.10 0.91 5.27 -51.93 -0.27 0.64 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -36.77 375.75 -10.50 -47.27 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.21 Total: 8.48 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -1.41 Total: -18.04 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.03 Total: -59.66 kcal Atomic # 8 Polarization: -67.57 SS G_CDS: -1.92 Total: -69.49 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 70.87 SS G_CDS: -0.57 Total: 70.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.77 -10.50 -47.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278255647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.606 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds