Wall clock time and date at job start Wed Apr 1 2020 04:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53003 * 109.46889 * 2 1 4 4 N 1.46497 * 109.46815 * 119.99384 * 2 1 3 5 5 C 1.34783 * 119.99784 * 154.99999 * 4 2 1 6 6 O 1.21592 * 119.99655 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00005 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99808 * 180.02562 * 7 5 4 9 9 C 1.53144 * 109.40047 * 119.88104 * 8 7 5 10 10 C 1.54252 * 108.84423 * 66.05967 * 9 8 7 11 11 H 1.08996 * 112.33481 * 187.68869 * 10 9 8 12 12 C 1.54614 * 107.85758 * 312.48133 * 10 9 8 13 13 C 1.53791 * 104.85103 * 88.46660 * 12 10 9 14 14 C 1.54605 * 104.85062 * 359.97438 * 13 12 10 15 15 H 1.09003 * 112.69196 * 146.95974 * 14 13 12 16 16 C 1.53144 * 109.43421 * 240.08239 * 8 7 5 17 17 N 1.48294 * 104.26232 * 25.02855 * 14 13 12 18 18 S 1.65596 * 128.21650 * 138.35435 * 17 14 13 19 19 O 1.42104 * 106.40058 * 336.46481 * 18 17 14 20 20 O 1.42094 * 106.40735 * 203.54116 * 18 17 14 21 21 C 1.76200 * 107.21634 * 90.00113 * 18 17 14 22 22 H 1.08000 * 120.00225 * 0.27857 * 21 18 17 23 23 C 1.37878 * 119.99968 * 180.02562 * 21 18 17 24 24 N 1.31509 * 120.00223 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 119.99787 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.46708 * 90.00208 * 25 23 21 27 27 H 1.48500 * 109.46829 * 209.99700 * 25 23 21 28 28 H 1.48501 * 109.47267 * 330.00413 * 25 23 21 29 29 H 1.08997 * 109.47050 * 300.00453 * 1 2 3 30 30 H 1.09003 * 109.46782 * 60.00253 * 1 2 3 31 31 H 1.08995 * 109.46802 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47050 * 239.99547 * 2 1 3 33 33 H 1.09003 * 109.46678 * 299.99463 * 3 2 1 34 34 H 1.08992 * 109.47199 * 59.99794 * 3 2 1 35 35 H 1.08999 * 109.47002 * 180.02562 * 3 2 1 36 36 H 0.97000 * 120.00402 * 335.00299 * 4 2 1 37 37 H 0.97000 * 120.00181 * 0.02562 * 7 5 4 38 38 H 1.09004 * 109.43662 * 359.97438 * 8 7 5 39 39 H 1.08995 * 109.57184 * 185.97030 * 9 8 7 40 40 H 1.09002 * 109.56946 * 306.21514 * 9 8 7 41 41 H 1.08997 * 110.37957 * 207.17235 * 12 10 9 42 42 H 1.09007 * 110.37855 * 329.42205 * 12 10 9 43 43 H 1.09001 * 110.42986 * 241.10147 * 13 12 10 44 44 H 1.09001 * 110.23638 * 118.80119 * 13 12 10 45 45 H 1.09002 * 109.57200 * 174.04595 * 16 8 7 46 46 H 1.09000 * 109.57112 * 53.68684 * 16 8 7 47 47 H 0.97002 * 120.00030 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 3.2404 -1.2591 1.1945 6 8 3.9377 -1.1985 0.2002 7 7 3.6898 -1.8939 2.2952 8 6 5.0183 -2.5114 2.2935 9 6 5.8786 -1.8705 3.3864 10 6 5.2813 -2.2263 4.7633 11 1 5.7693 -1.6906 5.5775 12 6 3.7592 -1.9615 4.7027 13 6 3.1501 -3.2778 4.1913 14 6 4.3583 -4.2207 3.9878 15 1 4.1157 -5.2643 4.1883 16 6 4.8823 -4.0136 2.5584 17 7 5.3905 -3.6973 4.9149 18 16 6.4168 -4.5524 5.8937 19 8 5.7999 -5.8126 6.1185 20 8 6.7946 -3.6735 6.9444 21 6 7.8785 -4.8729 4.9634 22 1 7.9619 -4.5144 3.9480 23 6 8.9179 -5.5769 5.5334 24 7 8.8183 -6.0096 6.7712 25 14 10.4673 -5.9173 4.5468 26 1 11.4355 -4.8096 4.7480 27 1 11.0738 -7.1938 5.0027 28 1 10.1240 -6.0191 3.1056 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 3.1301 1.4426 -0.0005 36 1 1.4622 -0.7385 1.9895 37 1 3.1337 -1.9419 3.0885 38 1 5.4894 -2.3558 1.3229 39 1 6.8976 -2.2513 3.3192 40 1 5.8842 -0.7880 3.2588 41 1 3.3746 -1.7287 5.6956 42 1 3.5430 -1.1464 4.0119 43 1 2.6323 -3.1154 3.2460 44 1 2.4668 -3.6904 4.9335 45 1 5.8557 -4.4926 2.4532 46 1 4.1809 -4.4480 1.8460 47 1 9.5497 -6.5046 7.1723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278255647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:40 Heat of formation + Delta-G solvation = -77.283429 kcal Electronic energy + Delta-G solvation = -30502.073971 eV Core-core repulsion = 26426.798265 eV Total energy + Delta-G solvation = -4075.275706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.81032 -40.32014 -37.42151 -36.96218 -36.14996 -35.45562 -35.13621 -33.24161 -32.31378 -32.11079 -30.44497 -28.24756 -28.00695 -25.11056 -24.52211 -22.50387 -22.00629 -21.60612 -21.51949 -20.47376 -19.83949 -19.03849 -18.30033 -17.18843 -17.05560 -16.32467 -16.15770 -16.03586 -15.86572 -15.52917 -15.13154 -15.00009 -14.72926 -14.72144 -14.27755 -14.16873 -13.98270 -13.72074 -13.58613 -13.50726 -13.19870 -13.03800 -12.98718 -12.95235 -12.56991 -12.49594 -12.33813 -12.29472 -12.26946 -12.19965 -12.09541 -11.83635 -11.75564 -11.59295 -11.30172 -11.26615 -11.05579 -10.90947 -10.14088 -9.75472 -9.52510 -8.75558 -7.48195 0.26681 1.31742 1.31934 1.47993 1.86679 2.18673 2.28293 2.56371 2.86556 3.43091 3.53174 3.56091 3.70458 3.97926 4.03165 4.04969 4.12916 4.16795 4.20236 4.23668 4.26758 4.38782 4.42461 4.65899 4.74071 4.75934 4.81366 4.83574 4.87460 4.92336 4.99842 5.02799 5.12308 5.12980 5.15332 5.20236 5.26201 5.28899 5.34174 5.41358 5.52330 5.71003 5.73917 5.81954 5.94164 6.12248 6.78209 7.20131 7.72723 8.19461 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.003184 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.063494 B = 8791.547360 C = 9414.848188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 C -0.160 4.160 4 N -0.731 5.731 5 C 0.688 3.312 6 O -0.641 6.641 7 N -0.746 5.746 8 C 0.171 3.829 9 C -0.139 4.139 10 C 0.142 3.858 11 H 0.091 0.909 12 C -0.151 4.151 13 C -0.151 4.151 14 C 0.142 3.858 15 H 0.090 0.910 16 C -0.139 4.139 17 N -1.018 6.018 18 S 2.739 3.261 19 O -1.041 7.041 20 O -1.041 7.041 21 C -1.037 5.037 22 H 0.118 0.882 23 C 0.072 3.928 24 N -0.896 5.896 25 Si 0.986 3.014 26 H -0.255 1.255 27 H -0.263 1.263 28 H -0.249 1.249 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.409 0.591 37 H 0.431 0.569 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.285 12.769 -12.040 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.388 5.388 5 C 0.388 3.612 6 O -0.523 6.523 7 N -0.423 5.423 8 C 0.065 3.935 9 C -0.179 4.179 10 C 0.035 3.965 11 H 0.109 0.891 12 C -0.191 4.191 13 C -0.191 4.191 14 C 0.036 3.964 15 H 0.109 0.891 16 C -0.179 4.179 17 N -0.854 5.854 18 S 2.842 3.158 19 O -1.031 7.031 20 O -1.031 7.031 21 C -1.170 5.170 22 H 0.136 0.864 23 C -0.141 4.141 24 N -0.528 5.528 25 Si 0.804 3.196 26 H -0.179 1.179 27 H -0.187 1.187 28 H -0.172 1.172 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.245 0.755 37 H 0.292 0.708 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.796 12.407 -11.715 23.943 hybrid contribution 1.305 -0.604 0.185 1.450 sum -15.492 11.802 -11.530 22.633 Atomic orbital electron populations 1.22028 0.91649 1.03126 1.04122 1.20850 0.95342 0.92213 0.87057 1.22171 1.00357 0.96193 1.03136 1.45169 1.16221 1.59282 1.18090 1.16509 0.82294 0.78487 0.83869 1.90866 1.58565 1.67290 1.35582 1.48004 1.19778 1.58349 1.16149 1.20562 0.82705 0.91059 0.99176 1.22547 0.99525 1.01661 0.94183 1.22144 0.97450 0.79660 0.97202 0.89105 1.23169 0.93606 0.98267 1.04031 1.23179 0.97278 0.94909 1.03712 1.22019 0.87363 0.98770 0.88280 0.89146 1.22449 1.02715 0.96302 0.96475 1.59455 1.50981 1.15979 1.59034 0.99304 0.73352 0.70728 0.72367 1.93290 1.79156 1.44580 1.86093 1.93289 1.84550 1.68271 1.57036 1.31021 1.22386 1.48786 1.14805 0.86433 1.25966 1.03122 0.89801 0.95194 1.69982 1.35916 1.32291 1.14573 0.85189 0.75990 0.79024 0.79366 1.17927 1.18713 1.17232 0.90560 0.89923 0.91840 0.92026 0.90494 0.91282 0.94954 0.75462 0.70778 0.89436 0.91423 0.89175 0.89316 0.85913 0.85872 0.89298 0.91439 0.89065 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.38 71.99 0.68 -0.42 16 2 C 0.15 2.13 3.18 45.00 0.14 2.27 16 3 C -0.16 -2.24 9.48 71.98 0.68 -1.55 16 4 N -0.73 -10.84 5.08 -457.79 -2.33 -13.17 16 5 C 0.69 15.84 8.53 179.05 1.53 17.36 16 6 O -0.64 -20.92 15.33 -4.01 -0.06 -20.98 16 7 N -0.75 -15.07 2.78 -457.34 -1.27 -16.35 16 8 C 0.17 4.49 3.15 45.09 0.14 4.63 16 9 C -0.14 -3.90 5.51 31.07 0.17 -3.73 16 10 C 0.14 4.34 4.28 45.62 0.20 4.53 16 11 H 0.09 3.02 7.84 -2.39 -0.02 3.00 16 12 C -0.15 -3.08 5.73 31.41 0.18 -2.90 16 13 C -0.15 -3.07 5.74 31.41 0.18 -2.89 16 14 C 0.14 4.34 4.25 45.41 0.19 4.54 16 15 H 0.09 3.00 7.85 -2.39 -0.02 2.98 16 16 C -0.14 -3.91 5.49 30.86 0.17 -3.74 16 17 N -1.02 -39.42 3.16 -454.56 -1.43 -40.85 16 18 S 2.74 147.56 5.32 -56.49 -0.30 147.26 16 19 O -1.04 -62.25 17.51 -128.00 -2.24 -64.49 16 20 O -1.04 -62.27 17.51 -128.00 -2.24 -64.51 16 21 C -1.04 -57.30 9.75 67.73 0.66 -56.64 16 22 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 23 C 0.07 4.03 5.46 84.66 0.46 4.49 16 24 N -0.90 -53.99 13.19 21.45 0.28 -53.71 16 25 Si 0.99 41.99 29.54 68.60 2.03 44.02 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 1.21 7.58 -2.39 -0.02 1.19 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.41 3.35 8.62 -92.71 -0.80 2.55 16 37 H 0.43 6.67 1.90 -116.58 -0.22 6.45 16 38 H 0.09 2.61 6.89 -2.38 -0.02 2.59 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.12 1.84 5.28 -2.38 -0.01 1.82 16 43 H 0.12 1.83 5.27 -2.39 -0.01 1.82 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -84.40 375.75 -2.21 -86.61 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.02 Total: 30.22 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 5.38 Total: -34.04 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -4.75 Total: -124.07 kcal Atomic # 8 Polarization: -145.45 SS G_CDS: -4.54 Total: -149.99 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 147.56 SS G_CDS: -0.30 Total: 147.26 kcal Total: -84.40 -2.21 -86.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278255647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.330 kcal (2) G-P(sol) polarization free energy of solvation -84.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds