Wall clock time and date at job start Wed Apr 1 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46963 * 2 1 4 4 N 1.46497 * 109.47391 * 120.00257 * 2 1 3 5 5 C 1.34771 * 120.00061 * 155.00163 * 4 2 1 6 6 O 1.21585 * 120.00425 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99904 * 180.02562 * 5 4 2 8 8 C 1.47170 * 136.00166 * 359.62962 * 7 5 4 9 9 C 1.52938 * 87.86159 * 206.92452 * 8 7 5 10 10 C 1.47166 * 136.00198 * 179.97438 * 7 5 4 11 11 C 1.52550 * 114.11586 * 87.94328 * 9 8 7 12 12 C 1.53354 * 109.12918 * 190.31900 * 11 9 8 13 13 N 1.46887 * 108.75235 * 307.76146 * 12 11 9 14 14 S 1.65602 * 120.46161 * 235.60613 * 13 12 11 15 15 O 1.42098 * 106.40373 * 23.55524 * 14 13 12 16 16 O 1.42099 * 106.40073 * 156.48425 * 14 13 12 17 17 C 1.76200 * 107.21717 * 270.01986 * 14 13 12 18 18 H 1.08010 * 119.99882 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00273 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99997 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00117 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47315 * 59.99965 * 21 19 17 23 23 H 1.48500 * 109.47129 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47294 * 299.99559 * 21 19 17 25 25 C 1.46891 * 119.07410 * 55.62189 * 13 12 11 26 26 C 1.52552 * 114.11870 * 220.62000 * 9 8 7 27 27 H 1.09004 * 109.46790 * 299.99721 * 1 2 3 28 28 H 1.08997 * 109.47279 * 59.99737 * 1 2 3 29 29 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47114 * 240.00596 * 2 1 3 31 31 H 1.09004 * 109.47140 * 60.00493 * 3 2 1 32 32 H 1.09001 * 109.46910 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47337 * 300.00227 * 3 2 1 34 34 H 0.97008 * 120.00116 * 335.00185 * 4 2 1 35 35 H 1.08999 * 113.48969 * 321.67037 * 8 7 5 36 36 H 1.08999 * 113.48708 * 92.17537 * 8 7 5 37 37 H 1.09004 * 113.48744 * 267.83028 * 10 7 5 38 38 H 1.09006 * 113.48726 * 38.33003 * 10 7 5 39 39 H 1.08997 * 109.53381 * 310.21377 * 11 9 8 40 40 H 1.09001 * 109.52599 * 70.43011 * 11 9 8 41 41 H 1.09008 * 109.58957 * 187.98145 * 12 11 9 42 42 H 1.09003 * 109.59359 * 67.54152 * 12 11 9 43 43 H 0.96996 * 120.00367 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.59089 * 184.58716 * 25 13 12 45 45 H 1.09005 * 109.71388 * 64.22018 * 25 13 12 46 46 H 1.09004 * 109.52785 * 289.56246 * 26 9 8 47 47 H 1.08996 * 109.53082 * 49.70453 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2404 -1.2591 1.1942 6 8 3.9373 -1.1992 0.1998 7 7 3.6895 -1.8949 2.2945 8 6 3.1712 -2.1693 3.6444 9 6 4.6214 -2.2302 4.1265 10 6 4.9156 -2.6143 2.6752 11 6 5.1973 -0.8801 4.5421 12 6 6.7093 -1.0226 4.7546 13 7 6.9536 -2.1437 5.6718 14 16 7.8280 -1.9175 7.0599 15 8 7.7286 -0.5357 7.3761 16 8 7.4354 -2.9497 7.9540 17 6 9.5190 -2.2172 6.6657 18 1 9.7984 -2.4925 5.6593 19 6 10.4855 -2.1013 7.6421 20 7 10.1453 -1.7666 8.8676 21 14 12.2781 -2.4197 7.2244 22 1 12.7171 -1.4699 6.1706 23 1 13.1108 -2.2298 8.4393 24 1 12.4317 -3.8120 6.7312 25 6 6.4119 -3.4682 5.3404 26 6 4.8976 -3.3433 5.1324 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.4623 -0.7388 1.9895 35 1 2.6065 -1.3397 4.0698 36 1 2.6469 -3.1216 3.7232 37 1 4.8647 -3.6874 2.4908 38 1 5.8253 -2.1608 2.2815 39 1 5.0070 -0.1461 3.7591 40 1 4.7281 -0.5541 5.4704 41 1 7.1059 -0.1038 5.1867 42 1 7.1957 -1.2194 3.7992 43 1 10.8253 -1.6846 9.5545 44 1 6.6127 -4.1603 6.1582 45 1 6.8771 -3.8376 4.4264 46 1 4.4180 -3.1039 6.0816 47 1 4.5022 -4.2849 4.7517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278255841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:22 Heat of formation + Delta-G solvation = -86.198342 kcal Electronic energy + Delta-G solvation = -29357.427331 eV Core-core repulsion = 25281.765046 eV Total energy + Delta-G solvation = -4075.662285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14903 -39.21969 -36.44913 -35.82210 -35.30762 -33.95552 -33.06860 -32.16245 -30.95861 -30.60388 -27.53716 -26.91448 -26.24892 -26.08468 -23.25364 -22.53338 -21.48595 -20.32227 -19.02223 -18.45439 -18.01406 -16.94819 -16.64137 -16.29604 -15.97097 -15.17024 -15.06626 -14.96609 -14.86550 -14.32127 -14.29577 -14.05851 -13.65850 -13.45858 -13.29126 -13.06089 -12.92874 -12.68234 -12.61609 -12.38659 -12.01999 -11.98543 -11.89865 -11.69737 -11.33677 -11.25811 -11.19767 -11.02914 -10.88888 -10.62360 -10.61765 -10.41609 -10.28687 -10.22559 -10.00894 -9.87342 -9.35171 -9.23037 -8.91838 -8.68140 -8.19291 -6.68836 -5.30878 2.25972 2.33640 3.09322 3.11791 3.13673 3.19472 3.69172 4.05862 4.14571 4.49383 4.52959 4.64530 4.67360 4.74032 4.87443 4.92139 5.06295 5.18604 5.22296 5.24376 5.32125 5.37351 5.45688 5.47576 5.59195 5.60627 5.62956 5.65618 5.72032 5.76647 5.81281 5.92386 5.99113 5.99733 6.09702 6.13502 6.20113 6.30264 6.36903 6.46361 6.50190 6.82724 7.05313 7.33422 7.59176 7.93324 7.98480 8.50476 8.90190 10.24526 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002502 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.987248 B =11187.274348 C =11432.907898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 C -0.165 4.165 4 N -0.742 5.742 5 C 0.734 3.266 6 O -0.591 6.591 7 N -0.663 5.663 8 C 0.106 3.894 9 C -0.086 4.086 10 C 0.134 3.866 11 C -0.103 4.103 12 C 0.126 3.874 13 N -1.010 6.010 14 S 2.716 3.284 15 O -1.004 7.004 16 O -1.004 7.004 17 C -1.020 5.020 18 H 0.101 0.899 19 C 0.133 3.867 20 N -0.847 5.847 21 Si 0.919 3.081 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.264 1.264 25 C 0.124 3.876 26 C -0.115 4.115 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.394 0.606 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.291 0.709 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 0.104 -13.341 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 C -0.224 4.224 4 N -0.397 5.397 5 C 0.438 3.562 6 O -0.469 6.469 7 N -0.402 5.402 8 C -0.018 4.018 9 C -0.088 4.088 10 C 0.011 3.989 11 C -0.142 4.142 12 C -0.001 4.001 13 N -0.845 5.845 14 S 2.817 3.183 15 O -0.995 6.995 16 O -0.994 6.994 17 C -1.154 5.154 18 H 0.119 0.881 19 C -0.085 4.085 20 N -0.476 5.476 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.002 4.002 26 C -0.154 4.154 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.227 0.773 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.497 0.564 -13.293 21.981 hybrid contribution 1.053 -0.350 -0.255 1.139 sum -16.443 0.214 -13.548 21.307 Atomic orbital electron populations 1.22078 0.94226 1.02537 1.02896 1.20784 0.93452 0.92730 0.88026 1.22220 1.02446 0.95839 1.01850 1.45190 1.17004 1.60278 1.17243 1.15239 0.81514 0.78078 0.81398 1.90922 1.57422 1.66319 1.32269 1.48675 1.21826 1.57357 1.12388 1.23094 0.97132 1.01062 0.80475 1.21765 0.94817 0.97782 0.94388 1.22937 0.87992 0.96553 0.91459 1.21564 0.96950 0.94126 1.01609 1.21204 0.94357 0.90463 0.94052 1.58126 1.70323 1.13916 1.42167 1.00470 0.74842 0.72810 0.70178 1.93346 1.88561 1.35611 1.81939 1.93344 1.84858 1.59667 1.61562 1.30615 1.16804 1.62896 1.05057 0.88053 1.24745 1.01582 0.89006 0.93162 1.69884 1.37282 1.38422 1.02059 0.86218 0.80833 0.79839 0.78767 1.18891 1.20171 1.18876 1.21207 0.92009 0.85154 1.01821 1.21755 0.97975 0.96754 0.98936 0.92096 0.90850 0.92060 0.89528 0.92581 0.91884 0.91750 0.77268 0.90760 0.89778 0.89908 0.90127 0.91114 0.90792 0.88624 0.92299 0.89872 0.88599 0.92261 0.90618 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.38 37.16 0.35 -0.51 16 2 C 0.15 1.31 3.18 -67.93 -0.22 1.09 16 3 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 4 N -0.74 -7.04 5.08 -58.68 -0.30 -7.34 16 5 C 0.73 9.68 8.76 -86.92 -0.76 8.92 16 6 O -0.59 -10.25 16.78 5.29 0.09 -10.16 16 7 N -0.66 -7.58 3.46 -190.89 -0.66 -8.24 16 8 C 0.11 0.93 7.44 -8.22 -0.06 0.86 16 9 C -0.09 -0.95 0.84 -155.01 -0.13 -1.08 16 10 C 0.13 1.52 7.56 -8.20 -0.06 1.46 16 11 C -0.10 -1.36 5.27 -26.78 -0.14 -1.50 16 12 C 0.13 2.05 6.36 -3.65 -0.02 2.02 16 13 N -1.01 -19.07 3.26 -113.38 -0.37 -19.44 16 14 S 2.72 69.50 5.00 -107.50 -0.54 68.96 16 15 O -1.00 -28.35 16.60 -57.17 -0.95 -29.30 16 16 O -1.00 -28.04 16.60 -57.17 -0.95 -28.99 16 17 C -1.02 -27.59 9.74 30.60 0.30 -27.29 16 18 H 0.10 2.52 7.81 -52.48 -0.41 2.11 16 19 C 0.13 3.67 5.46 -17.82 -0.10 3.58 16 20 N -0.85 -24.66 13.19 55.43 0.73 -23.93 16 21 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 25 C 0.12 1.90 6.37 -3.64 -0.02 1.88 16 26 C -0.11 -1.33 5.30 -26.78 -0.14 -1.47 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.39 2.84 8.32 -40.82 -0.34 2.50 16 35 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 36 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 38 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 39 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 1.71 6.92 -51.92 -0.36 1.36 16 42 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 43 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.10 1.60 6.92 -51.93 -0.36 1.24 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -36.90 390.54 -10.42 -47.31 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.68 Total: 2.83 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.66 Total: -13.07 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.60 Total: -58.94 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -1.81 Total: -68.45 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 69.50 SS G_CDS: -0.54 Total: 68.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.90 -10.42 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278255841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.887 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds