Wall clock time and date at job start Wed Apr 1 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46963 * 2 1 4 4 N 1.46497 * 109.47391 * 120.00257 * 2 1 3 5 5 C 1.34771 * 120.00061 * 155.00163 * 4 2 1 6 6 O 1.21585 * 120.00425 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99904 * 180.02562 * 5 4 2 8 8 C 1.47170 * 136.00166 * 359.62962 * 7 5 4 9 9 C 1.52938 * 87.86159 * 206.92452 * 8 7 5 10 10 C 1.47166 * 136.00198 * 179.97438 * 7 5 4 11 11 C 1.52550 * 114.11586 * 87.94328 * 9 8 7 12 12 C 1.53354 * 109.12918 * 190.31900 * 11 9 8 13 13 N 1.46887 * 108.75235 * 307.76146 * 12 11 9 14 14 S 1.65602 * 120.46161 * 235.60613 * 13 12 11 15 15 O 1.42098 * 106.40373 * 23.55524 * 14 13 12 16 16 O 1.42099 * 106.40073 * 156.48425 * 14 13 12 17 17 C 1.76200 * 107.21717 * 270.01986 * 14 13 12 18 18 H 1.08010 * 119.99882 * 359.97438 * 17 14 13 19 19 C 1.37873 * 120.00273 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99997 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00117 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47315 * 59.99965 * 21 19 17 23 23 H 1.48500 * 109.47129 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47294 * 299.99559 * 21 19 17 25 25 C 1.46891 * 119.07410 * 55.62189 * 13 12 11 26 26 C 1.52552 * 114.11870 * 220.62000 * 9 8 7 27 27 H 1.09004 * 109.46790 * 299.99721 * 1 2 3 28 28 H 1.08997 * 109.47279 * 59.99737 * 1 2 3 29 29 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47114 * 240.00596 * 2 1 3 31 31 H 1.09004 * 109.47140 * 60.00493 * 3 2 1 32 32 H 1.09001 * 109.46910 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47337 * 300.00227 * 3 2 1 34 34 H 0.97008 * 120.00116 * 335.00185 * 4 2 1 35 35 H 1.08999 * 113.48969 * 321.67037 * 8 7 5 36 36 H 1.08999 * 113.48708 * 92.17537 * 8 7 5 37 37 H 1.09004 * 113.48744 * 267.83028 * 10 7 5 38 38 H 1.09006 * 113.48726 * 38.33003 * 10 7 5 39 39 H 1.08997 * 109.53381 * 310.21377 * 11 9 8 40 40 H 1.09001 * 109.52599 * 70.43011 * 11 9 8 41 41 H 1.09008 * 109.58957 * 187.98145 * 12 11 9 42 42 H 1.09003 * 109.59359 * 67.54152 * 12 11 9 43 43 H 0.96996 * 120.00367 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.59089 * 184.58716 * 25 13 12 45 45 H 1.09005 * 109.71388 * 64.22018 * 25 13 12 46 46 H 1.09004 * 109.52785 * 289.56246 * 26 9 8 47 47 H 1.08996 * 109.53082 * 49.70453 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2404 -1.2591 1.1942 6 8 3.9373 -1.1992 0.1998 7 7 3.6895 -1.8949 2.2945 8 6 3.1712 -2.1693 3.6444 9 6 4.6214 -2.2302 4.1265 10 6 4.9156 -2.6143 2.6752 11 6 5.1973 -0.8801 4.5421 12 6 6.7093 -1.0226 4.7546 13 7 6.9536 -2.1437 5.6718 14 16 7.8280 -1.9175 7.0599 15 8 7.7286 -0.5357 7.3761 16 8 7.4354 -2.9497 7.9540 17 6 9.5190 -2.2172 6.6657 18 1 9.7984 -2.4925 5.6593 19 6 10.4855 -2.1013 7.6421 20 7 10.1453 -1.7666 8.8676 21 14 12.2781 -2.4197 7.2244 22 1 12.7171 -1.4699 6.1706 23 1 13.1108 -2.2298 8.4393 24 1 12.4317 -3.8120 6.7312 25 6 6.4119 -3.4682 5.3404 26 6 4.8976 -3.3433 5.1324 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.4623 -0.7388 1.9895 35 1 2.6065 -1.3397 4.0698 36 1 2.6469 -3.1216 3.7232 37 1 4.8647 -3.6874 2.4908 38 1 5.8253 -2.1608 2.2815 39 1 5.0070 -0.1461 3.7591 40 1 4.7281 -0.5541 5.4704 41 1 7.1059 -0.1038 5.1867 42 1 7.1957 -1.2194 3.7992 43 1 10.8253 -1.6846 9.5545 44 1 6.6127 -4.1603 6.1582 45 1 6.8771 -3.8376 4.4264 46 1 4.4180 -3.1039 6.0816 47 1 4.5022 -4.2849 4.7517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278255841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:21 Heat of formation + Delta-G solvation = -114.938311 kcal Electronic energy + Delta-G solvation = -29358.673590 eV Core-core repulsion = 25281.765046 eV Total energy + Delta-G solvation = -4076.908544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06645 -40.17161 -37.56345 -37.42299 -36.77099 -36.08577 -35.14746 -33.11807 -32.09586 -31.60450 -28.25028 -28.08541 -27.86360 -27.05341 -24.42880 -23.70850 -22.22330 -21.25669 -20.80562 -19.89764 -18.84703 -18.50754 -18.16941 -17.48511 -17.04025 -16.88090 -16.60372 -15.96852 -15.88425 -15.68149 -15.25944 -15.16761 -15.14030 -14.86751 -14.36743 -14.05303 -13.91755 -13.82444 -13.69753 -13.29806 -13.12242 -13.08876 -13.03386 -12.99941 -12.89183 -12.50866 -12.46130 -12.39071 -12.33279 -12.29633 -12.04325 -11.90379 -11.61032 -11.49418 -11.35254 -11.23193 -11.02695 -10.90899 -10.24552 -9.70005 -9.49192 -8.72564 -7.45931 0.35509 1.33471 1.35091 1.47910 1.50936 2.15718 2.20787 2.58782 2.87042 2.94615 3.26018 3.73334 3.82309 3.84261 3.94721 4.05711 4.16781 4.18773 4.33041 4.36768 4.41761 4.44823 4.52769 4.57416 4.64211 4.73184 4.74172 4.76060 4.78328 4.82006 4.89428 4.93061 4.94658 4.99797 5.05313 5.16566 5.25347 5.26876 5.29306 5.33875 5.39750 5.45501 5.63101 5.92324 6.06530 6.28248 6.80329 7.07697 7.59404 8.21500 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002502 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.987248 B =11187.274348 C =11432.907898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 C -0.160 4.160 4 N -0.728 5.728 5 C 0.726 3.274 6 O -0.642 6.642 7 N -0.667 5.667 8 C 0.119 3.881 9 C -0.085 4.085 10 C 0.130 3.870 11 C -0.096 4.096 12 C 0.119 3.881 13 N -1.004 6.004 14 S 2.721 3.279 15 O -1.042 7.042 16 O -1.036 7.036 17 C -1.043 5.043 18 H 0.115 0.885 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.986 3.014 22 H -0.254 1.254 23 H -0.264 1.264 24 H -0.250 1.250 25 C 0.111 3.889 26 C -0.106 4.106 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.298 0.702 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 -0.879 -14.711 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.384 5.384 5 C 0.429 3.571 6 O -0.524 6.524 7 N -0.405 5.405 8 C -0.003 4.003 9 C -0.087 4.087 10 C 0.007 3.993 11 C -0.136 4.136 12 C -0.006 4.006 13 N -0.843 5.843 14 S 2.823 3.177 15 O -1.032 7.032 16 O -1.027 7.027 17 C -1.176 5.176 18 H 0.133 0.867 19 C -0.142 4.142 20 N -0.525 5.525 21 Si 0.804 3.196 22 H -0.178 1.178 23 H -0.188 1.188 24 H -0.174 1.174 25 C -0.014 4.014 26 C -0.145 4.145 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.244 0.756 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.210 -0.421 -14.623 24.146 hybrid contribution 1.521 -0.031 0.116 1.526 sum -17.689 -0.451 -14.507 22.882 Atomic orbital electron populations 1.22010 0.91322 1.03168 1.04187 1.20898 0.95571 0.92130 0.86803 1.22179 1.00220 0.96271 1.03217 1.45124 1.15903 1.59257 1.18102 1.15494 0.82091 0.78311 0.81163 1.90883 1.59023 1.68179 1.34337 1.48691 1.22110 1.56875 1.12836 1.23201 0.95570 1.03337 0.78173 1.21618 0.96908 0.96126 0.94010 1.23041 0.87472 0.97666 0.91156 1.21468 0.94365 0.96015 1.01709 1.21387 0.97083 0.88576 0.93599 1.57596 1.69643 1.16211 1.40827 0.99902 0.74938 0.71564 0.71254 1.93285 1.89015 1.37429 1.83501 1.93287 1.85234 1.60249 1.63892 1.31041 1.18109 1.62650 1.05831 0.86670 1.25970 1.07053 0.88348 0.92865 1.69976 1.39240 1.39909 1.03416 0.85222 0.74573 0.80513 0.79259 1.17778 1.18791 1.17357 1.21572 0.95034 0.82741 1.02038 1.21728 0.94793 0.98856 0.99120 0.90760 0.89585 0.91746 0.91886 0.91527 0.95205 0.90088 0.75625 0.89072 0.86692 0.87728 0.92088 0.90464 0.91186 0.91086 0.90748 0.89190 0.90440 0.89923 0.91127 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.38 71.98 0.68 -0.52 16 2 C 0.15 2.35 3.18 44.99 0.14 2.49 16 3 C -0.16 -2.54 9.48 71.98 0.68 -1.85 16 4 N -0.73 -12.50 5.08 -457.82 -2.33 -14.82 16 5 C 0.73 18.30 8.76 179.06 1.57 19.87 16 6 O -0.64 -22.48 16.78 -3.98 -0.07 -22.55 16 7 N -0.67 -13.61 3.46 -876.13 -3.03 -16.64 16 8 C 0.12 1.61 7.44 83.31 0.62 2.23 16 9 C -0.09 -1.66 0.84 -52.50 -0.04 -1.70 16 10 C 0.13 2.63 7.56 83.33 0.63 3.26 16 11 C -0.10 -2.43 5.27 30.56 0.16 -2.27 16 12 C 0.12 3.90 6.36 86.42 0.55 4.45 16 13 N -1.00 -38.12 3.26 -512.63 -1.67 -39.79 16 14 S 2.72 143.74 5.00 -56.49 -0.28 143.46 16 15 O -1.04 -61.41 16.60 -128.00 -2.12 -63.54 16 16 O -1.04 -59.86 16.60 -128.00 -2.12 -61.98 16 17 C -1.04 -57.39 9.74 67.73 0.66 -56.73 16 18 H 0.12 5.76 7.81 -2.91 -0.02 5.74 16 19 C 0.07 3.93 5.46 84.65 0.46 4.39 16 20 N -0.89 -53.43 13.19 21.45 0.28 -53.15 16 21 Si 0.99 41.62 29.54 68.60 2.03 43.65 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 25 C 0.11 3.26 6.37 86.43 0.55 3.81 16 26 C -0.11 -2.14 5.30 30.57 0.16 -1.98 16 27 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 1.30 7.58 -2.39 -0.02 1.28 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.41 4.63 8.32 -92.70 -0.77 3.86 16 35 H 0.09 0.99 8.11 -2.39 -0.02 0.97 16 36 H 0.12 0.97 8.09 -2.39 -0.02 0.96 16 37 H 0.10 1.69 8.06 -2.39 -0.02 1.67 16 38 H 0.06 1.48 7.53 -2.38 -0.02 1.47 16 39 H 0.08 1.86 7.95 -2.39 -0.02 1.84 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 2.67 6.92 -2.38 -0.02 2.65 16 42 H 0.07 2.19 7.60 -2.39 -0.02 2.17 16 43 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.08 2.58 6.92 -2.39 -0.02 2.56 16 45 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.11 1.47 8.09 -2.39 -0.02 1.45 16 Total: -1.00 -84.93 390.54 -2.29 -87.22 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.20 Total: 22.69 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 6.82 Total: -24.55 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.74 Total: -124.41 kcal Atomic # 8 Polarization: -143.76 SS G_CDS: -4.32 Total: -148.07 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 143.74 SS G_CDS: -0.28 Total: 143.46 kcal Total: -84.93 -2.29 -87.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278255841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.715 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds