Wall clock time and date at job start Wed Apr 1 2020 04:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47010 * 2 1 4 4 N 1.46496 * 109.47542 * 120.00367 * 2 1 3 5 5 C 1.34779 * 119.99866 * 84.99472 * 4 2 1 6 6 O 1.21587 * 120.00150 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99850 * 179.97438 * 5 4 2 8 8 C 1.47678 * 134.44974 * 179.97438 * 7 5 4 9 9 C 1.53439 * 85.96994 * 155.71808 * 8 7 5 10 10 C 1.47662 * 134.45393 * 0.02562 * 7 5 4 11 11 C 1.52633 * 113.72420 * 268.85842 * 9 8 7 12 12 C 1.53190 * 109.33963 * 171.19942 * 11 9 8 13 13 C 1.52669 * 109.42724 * 58.92937 * 12 11 9 14 14 N 1.46902 * 109.35937 * 303.79255 * 13 12 11 15 15 S 1.65599 * 120.69006 * 235.29461 * 14 13 12 16 16 O 1.42100 * 106.40324 * 156.18040 * 15 14 13 17 17 O 1.42106 * 106.40227 * 23.26554 * 15 14 13 18 18 C 1.76199 * 107.21905 * 269.72209 * 15 14 13 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99614 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99350 * 179.97438 * 20 18 15 22 22 Si 1.86798 * 120.00608 * 359.97438 * 20 18 15 23 23 H 1.48493 * 109.47326 * 270.00340 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00090 * 22 20 18 25 25 H 1.48498 * 109.47210 * 149.99801 * 22 20 18 26 26 C 1.47111 * 118.61811 * 55.02325 * 14 13 12 27 27 H 1.09005 * 109.46765 * 299.99256 * 1 2 3 28 28 H 1.08996 * 109.47760 * 59.99339 * 1 2 3 29 29 H 1.09006 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46765 * 240.00744 * 2 1 3 31 31 H 1.09007 * 109.47245 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47326 * 300.00430 * 3 2 1 33 33 H 1.09004 * 109.47144 * 60.00373 * 3 2 1 34 34 H 0.96994 * 120.00323 * 264.99789 * 4 2 1 35 35 H 1.08999 * 113.79420 * 41.45333 * 8 7 5 36 36 H 1.08993 * 113.79385 * 269.97819 * 8 7 5 37 37 H 1.09008 * 113.79764 * 90.01986 * 10 7 5 38 38 H 1.08997 * 113.79651 * 318.54555 * 10 7 5 39 39 H 1.09003 * 109.49325 * 291.15488 * 11 9 8 40 40 H 1.08993 * 109.49787 * 51.23741 * 11 9 8 41 41 H 1.09001 * 109.49443 * 179.02836 * 12 11 9 42 42 H 1.08999 * 109.49223 * 299.07940 * 12 11 9 43 43 H 1.09001 * 109.43939 * 183.79909 * 13 12 11 44 44 H 1.09010 * 109.36580 * 63.73364 * 13 12 11 45 45 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.64129 * 68.56074 * 26 14 13 47 47 H 1.09002 * 109.64552 * 189.18497 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0323 1.1942 6 8 1.8582 -2.6693 0.1997 7 7 2.5969 -2.6676 2.2944 8 6 2.8547 -4.0800 2.6402 9 6 3.8403 -3.5325 3.6810 10 6 3.0286 -2.2305 3.6372 11 6 5.2665 -3.3842 3.1578 12 6 6.1107 -2.6329 4.1919 13 6 6.1039 -3.4038 5.5097 14 7 4.7167 -3.6032 5.9501 15 16 4.2263 -3.1034 7.4507 16 8 2.8206 -2.9115 7.3702 17 8 5.1288 -2.0801 7.8477 18 6 4.4820 -4.4497 8.5583 19 1 4.8929 -5.3791 8.1926 20 6 4.1586 -4.3161 9.8919 21 7 4.3490 -5.3212 10.7185 22 14 3.4499 -2.7078 10.5248 23 1 4.5554 -1.8169 10.9596 24 1 2.6782 -2.0469 9.4417 25 1 2.5526 -2.9813 11.6760 26 6 3.7709 -4.2506 5.0279 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.2492 -0.1825 1.9893 35 1 3.3300 -4.6488 1.8410 36 1 1.9951 -4.5903 3.0745 37 1 2.2206 -2.1913 4.3678 38 1 3.6420 -1.3296 3.6303 39 1 5.6955 -4.3715 2.9861 40 1 5.2545 -2.8249 2.2224 41 1 7.1342 -2.5407 3.8283 42 1 5.6908 -1.6399 4.3520 43 1 6.6481 -2.8363 6.2647 44 1 6.5830 -4.3721 5.3645 45 1 4.1218 -5.2272 11.6568 46 1 4.0435 -5.2980 4.8992 47 1 2.7601 -4.1787 5.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278256110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:19 Heat of formation + Delta-G solvation = -76.286551 kcal Electronic energy + Delta-G solvation = -29839.861706 eV Core-core repulsion = 25764.629229 eV Total energy + Delta-G solvation = -4075.232478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98052 -39.14630 -36.49958 -35.83716 -35.67302 -34.50671 -33.06909 -32.08836 -31.78461 -30.12640 -27.48109 -26.45696 -26.34309 -26.20524 -24.38964 -22.14465 -21.35806 -20.28903 -18.81662 -18.46738 -17.95068 -17.39704 -16.83506 -16.56311 -16.08643 -15.33700 -15.20563 -14.94552 -14.72637 -14.42976 -14.06096 -13.83269 -13.75406 -13.60789 -13.28506 -13.25040 -13.00397 -12.82391 -12.58777 -12.56784 -12.35605 -12.16868 -11.80635 -11.67814 -11.63320 -11.45346 -11.21750 -11.09877 -10.92228 -10.84661 -10.71091 -10.61450 -10.35476 -10.23830 -10.07674 -9.82761 -9.28417 -9.25396 -9.17965 -8.60048 -8.30450 -6.84379 -5.38256 1.91909 2.40782 3.03040 3.13050 3.19391 3.21292 3.72683 3.90348 4.00004 4.31844 4.54607 4.58071 4.67293 4.80870 4.81241 4.98607 5.04882 5.16109 5.29407 5.30847 5.33548 5.36529 5.39644 5.44067 5.51005 5.51973 5.57588 5.60439 5.65251 5.68197 5.74541 5.85906 5.93107 5.96489 5.99789 6.02962 6.09138 6.16004 6.23444 6.38905 6.44628 6.60124 7.11224 7.27796 7.44562 7.97990 8.18207 8.57070 8.66669 10.28144 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.003092 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.273968 B = 9052.488270 C = 9548.092991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.161 4.161 4 N -0.742 5.742 5 C 0.729 3.271 6 O -0.596 6.596 7 N -0.660 5.660 8 C 0.140 3.860 9 C -0.103 4.103 10 C 0.106 3.894 11 C -0.087 4.087 12 C -0.132 4.132 13 C 0.122 3.878 14 N -1.000 6.000 15 S 2.675 3.325 16 O -1.006 7.006 17 O -1.008 7.008 18 C -1.016 5.016 19 H 0.121 0.879 20 C 0.152 3.848 21 N -0.823 5.823 22 Si 0.801 3.199 23 H -0.247 1.247 24 H -0.220 1.220 25 H -0.255 1.255 26 C 0.138 3.862 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.281 0.719 46 H 0.071 0.929 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 7.844 -17.185 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 C -0.218 4.218 4 N -0.398 5.398 5 C 0.432 3.568 6 O -0.475 6.475 7 N -0.399 5.399 8 C 0.017 3.983 9 C -0.106 4.106 10 C -0.016 4.016 11 C -0.125 4.125 12 C -0.171 4.171 13 C -0.003 4.003 14 N -0.835 5.835 15 S 2.779 3.221 16 O -0.997 6.997 17 O -0.998 6.998 18 C -1.150 5.150 19 H 0.139 0.861 20 C -0.067 4.067 21 N -0.452 5.452 22 Si 0.621 3.379 23 H -0.170 1.170 24 H -0.142 1.142 25 H -0.179 1.179 26 C 0.012 3.988 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.229 0.771 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.614 8.257 -17.762 19.654 hybrid contribution -0.053 0.150 1.125 1.136 sum -1.666 8.407 -16.637 18.715 Atomic orbital electron populations 1.22214 0.95551 1.02694 1.01830 1.20768 0.93889 0.92243 0.88083 1.22087 1.01749 0.95121 1.02876 1.45214 1.71882 1.05389 1.17301 1.15426 0.77324 0.81675 0.82390 1.90898 1.57711 1.65926 1.32985 1.49130 1.69293 1.09766 1.11714 1.23035 0.96777 0.83069 0.95450 1.22450 0.95757 0.96296 0.96060 1.23381 0.97013 0.98383 0.82863 1.21174 0.92235 1.01212 0.97861 1.21820 0.99970 0.99662 0.95609 1.21163 0.82598 1.00054 0.96535 1.57689 1.16662 1.76780 1.32356 1.01421 0.73008 0.75559 0.72128 1.93444 1.32524 1.87475 1.86208 1.93397 1.66155 1.59177 1.81111 1.30534 1.57778 1.19754 1.06947 0.86081 1.24445 0.90254 0.96498 0.95519 1.69991 1.39283 1.30709 1.05206 0.87881 0.82079 0.84012 0.83967 1.17035 1.14174 1.17884 1.21201 0.94401 0.95972 0.87263 0.92570 0.91787 0.92010 0.89555 0.91985 0.90904 0.92048 0.77122 0.89831 0.89392 0.88746 0.90346 0.90996 0.91765 0.90843 0.91680 0.88778 0.91895 0.90884 0.91072 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.16 1.45 3.18 -67.93 -0.22 1.24 16 3 C -0.16 -1.05 9.38 37.16 0.35 -0.70 16 4 N -0.74 -8.08 5.08 -58.68 -0.30 -8.37 16 5 C 0.73 10.27 8.72 -86.92 -0.76 9.51 16 6 O -0.60 -10.49 16.73 5.29 0.09 -10.41 16 7 N -0.66 -8.36 3.45 -186.24 -0.64 -9.00 16 8 C 0.14 1.61 7.97 -3.18 -0.03 1.59 16 9 C -0.10 -1.23 0.87 -154.41 -0.13 -1.36 16 10 C 0.11 1.29 7.42 -3.16 -0.02 1.27 16 11 C -0.09 -0.94 5.03 -26.82 -0.13 -1.07 16 12 C -0.13 -1.52 5.99 -26.80 -0.16 -1.68 16 13 C 0.12 1.79 6.38 -3.99 -0.03 1.77 16 14 N -1.00 -17.44 3.30 -113.92 -0.38 -17.81 16 15 S 2.68 62.47 4.23 -107.50 -0.45 62.01 16 16 O -1.01 -24.76 14.62 -57.17 -0.84 -25.60 16 17 O -1.01 -25.24 15.43 -57.17 -0.88 -26.12 16 18 C -1.02 -27.30 10.29 30.60 0.31 -26.99 16 19 H 0.12 3.30 8.06 -52.49 -0.42 2.88 16 20 C 0.15 4.27 5.47 -17.82 -0.10 4.17 16 21 N -0.82 -23.32 13.96 55.43 0.77 -22.55 16 22 Si 0.80 19.99 26.54 -169.99 -4.51 15.48 16 23 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.22 -5.52 5.61 56.52 0.32 -5.20 16 25 H -0.25 -5.86 7.11 56.52 0.40 -5.46 16 26 C 0.14 1.99 5.68 -3.81 -0.02 1.97 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 3.64 8.21 -40.82 -0.34 3.30 16 35 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.09 1.23 7.98 -51.92 -0.41 0.82 16 38 H 0.08 0.87 7.37 -51.93 -0.38 0.48 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.79 7.36 -51.93 -0.38 0.40 16 43 H 0.09 1.50 6.93 -51.93 -0.36 1.14 16 44 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 45 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.53 6.75 -51.93 -0.35 1.18 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -33.98 383.17 -9.69 -43.67 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.74 Total: 4.35 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.58 Total: -11.42 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.54 Total: -57.74 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -1.63 Total: -62.12 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.51 Total: 15.48 kcal Atomic # 16 Polarization: 62.47 SS G_CDS: -0.45 Total: 62.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.98 -9.69 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278256110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.615 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds