Wall clock time and date at job start Wed Apr 1 2020 04:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47010 * 2 1 4 4 N 1.46496 * 109.47542 * 120.00367 * 2 1 3 5 5 C 1.34779 * 119.99866 * 84.99472 * 4 2 1 6 6 O 1.21587 * 120.00150 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99850 * 179.97438 * 5 4 2 8 8 C 1.47678 * 134.44974 * 179.97438 * 7 5 4 9 9 C 1.53439 * 85.96994 * 155.71808 * 8 7 5 10 10 C 1.47662 * 134.45393 * 0.02562 * 7 5 4 11 11 C 1.52633 * 113.72420 * 268.85842 * 9 8 7 12 12 C 1.53190 * 109.33963 * 171.19942 * 11 9 8 13 13 C 1.52669 * 109.42724 * 58.92937 * 12 11 9 14 14 N 1.46902 * 109.35937 * 303.79255 * 13 12 11 15 15 S 1.65599 * 120.69006 * 235.29461 * 14 13 12 16 16 O 1.42100 * 106.40324 * 156.18040 * 15 14 13 17 17 O 1.42106 * 106.40227 * 23.26554 * 15 14 13 18 18 C 1.76199 * 107.21905 * 269.72209 * 15 14 13 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99614 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99350 * 179.97438 * 20 18 15 22 22 Si 1.86798 * 120.00608 * 359.97438 * 20 18 15 23 23 H 1.48493 * 109.47326 * 270.00340 * 22 20 18 24 24 H 1.48506 * 109.46545 * 30.00090 * 22 20 18 25 25 H 1.48498 * 109.47210 * 149.99801 * 22 20 18 26 26 C 1.47111 * 118.61811 * 55.02325 * 14 13 12 27 27 H 1.09005 * 109.46765 * 299.99256 * 1 2 3 28 28 H 1.08996 * 109.47760 * 59.99339 * 1 2 3 29 29 H 1.09006 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46765 * 240.00744 * 2 1 3 31 31 H 1.09007 * 109.47245 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47326 * 300.00430 * 3 2 1 33 33 H 1.09004 * 109.47144 * 60.00373 * 3 2 1 34 34 H 0.96994 * 120.00323 * 264.99789 * 4 2 1 35 35 H 1.08999 * 113.79420 * 41.45333 * 8 7 5 36 36 H 1.08993 * 113.79385 * 269.97819 * 8 7 5 37 37 H 1.09008 * 113.79764 * 90.01986 * 10 7 5 38 38 H 1.08997 * 113.79651 * 318.54555 * 10 7 5 39 39 H 1.09003 * 109.49325 * 291.15488 * 11 9 8 40 40 H 1.08993 * 109.49787 * 51.23741 * 11 9 8 41 41 H 1.09001 * 109.49443 * 179.02836 * 12 11 9 42 42 H 1.08999 * 109.49223 * 299.07940 * 12 11 9 43 43 H 1.09001 * 109.43939 * 183.79909 * 13 12 11 44 44 H 1.09010 * 109.36580 * 63.73364 * 13 12 11 45 45 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.64129 * 68.56074 * 26 14 13 47 47 H 1.09002 * 109.64552 * 189.18497 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0323 1.1942 6 8 1.8582 -2.6693 0.1997 7 7 2.5969 -2.6676 2.2944 8 6 2.8547 -4.0800 2.6402 9 6 3.8403 -3.5325 3.6810 10 6 3.0286 -2.2305 3.6372 11 6 5.2665 -3.3842 3.1578 12 6 6.1107 -2.6329 4.1919 13 6 6.1039 -3.4038 5.5097 14 7 4.7167 -3.6032 5.9501 15 16 4.2263 -3.1034 7.4507 16 8 2.8206 -2.9115 7.3702 17 8 5.1288 -2.0801 7.8477 18 6 4.4820 -4.4497 8.5583 19 1 4.8929 -5.3791 8.1926 20 6 4.1586 -4.3161 9.8919 21 7 4.3490 -5.3212 10.7185 22 14 3.4499 -2.7078 10.5248 23 1 4.5554 -1.8169 10.9596 24 1 2.6782 -2.0469 9.4417 25 1 2.5526 -2.9813 11.6760 26 6 3.7709 -4.2506 5.0279 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.2492 -0.1825 1.9893 35 1 3.3300 -4.6488 1.8410 36 1 1.9951 -4.5903 3.0745 37 1 2.2206 -2.1913 4.3678 38 1 3.6420 -1.3296 3.6303 39 1 5.6955 -4.3715 2.9861 40 1 5.2545 -2.8249 2.2224 41 1 7.1342 -2.5407 3.8283 42 1 5.6908 -1.6399 4.3520 43 1 6.6481 -2.8363 6.2647 44 1 6.5830 -4.3721 5.3645 45 1 4.1218 -5.2272 11.6568 46 1 4.0435 -5.2980 4.8992 47 1 2.7601 -4.1787 5.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278256110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:17 Heat of formation + Delta-G solvation = -101.869312 kcal Electronic energy + Delta-G solvation = -29840.971058 eV Core-core repulsion = 25764.629229 eV Total energy + Delta-G solvation = -4076.341830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98726 -40.16800 -37.75317 -37.49542 -36.74832 -36.44226 -35.16164 -33.13758 -32.79582 -31.11502 -28.51815 -28.10474 -27.33417 -27.20898 -25.56883 -23.15580 -22.19693 -21.31533 -20.67662 -19.62746 -19.00244 -18.88470 -18.63426 -17.51345 -17.25401 -17.11412 -16.55079 -15.94004 -15.71919 -15.53295 -15.35466 -15.31017 -15.08185 -14.88200 -14.81508 -14.43805 -14.17714 -13.89400 -13.64225 -13.49914 -13.33774 -13.16119 -13.09900 -13.07005 -12.92024 -12.74870 -12.64296 -12.54928 -12.31336 -11.99502 -11.91933 -11.89628 -11.73880 -11.53960 -11.32693 -11.28480 -11.16299 -11.07842 -10.27110 -9.71399 -9.53213 -8.95005 -7.49778 0.13788 1.05781 1.14695 1.21315 1.46662 1.89419 2.13104 2.43499 2.46379 2.84482 3.26569 3.41955 3.69876 3.79318 3.93281 4.02861 4.12939 4.14658 4.22849 4.27224 4.31468 4.40124 4.45104 4.49167 4.60468 4.63525 4.70572 4.73384 4.74255 4.82247 4.90455 4.92205 4.97329 5.01943 5.05577 5.12861 5.24256 5.26597 5.31533 5.35721 5.44563 5.46152 5.61096 5.91267 6.04725 6.21134 6.56608 6.98977 7.55003 8.22905 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.003092 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.273968 B = 9052.488270 C = 9548.092991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 C -0.151 4.151 4 N -0.733 5.733 5 C 0.722 3.278 6 O -0.636 6.636 7 N -0.659 5.659 8 C 0.139 3.861 9 C -0.093 4.093 10 C 0.104 3.896 11 C -0.081 4.081 12 C -0.125 4.125 13 C 0.111 3.889 14 N -0.994 5.994 15 S 2.698 3.302 16 O -1.021 7.021 17 O -1.026 7.026 18 C -1.039 5.039 19 H 0.103 0.897 20 C 0.106 3.894 21 N -0.857 5.857 22 Si 0.823 3.177 23 H -0.240 1.240 24 H -0.224 1.224 25 H -0.224 1.224 26 C 0.131 3.869 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.290 0.710 46 H 0.091 0.909 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 9.293 -18.563 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 C -0.209 4.209 4 N -0.389 5.389 5 C 0.425 3.575 6 O -0.519 6.519 7 N -0.398 5.398 8 C 0.016 3.984 9 C -0.096 4.096 10 C -0.019 4.019 11 C -0.118 4.118 12 C -0.164 4.164 13 C -0.013 4.013 14 N -0.833 5.833 15 S 2.799 3.201 16 O -1.012 7.012 17 O -1.016 7.016 18 C -1.171 5.171 19 H 0.122 0.878 20 C -0.110 4.110 21 N -0.488 5.488 22 Si 0.640 3.360 23 H -0.163 1.163 24 H -0.146 1.146 25 H -0.146 1.146 26 C 0.005 3.995 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.240 0.760 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.223 9.709 -19.083 21.445 hybrid contribution -0.141 -0.360 1.468 1.518 sum -1.364 9.349 -17.614 19.988 Atomic orbital electron populations 1.22171 0.95298 1.01132 1.03185 1.20919 0.94109 0.93620 0.86776 1.22029 1.01763 0.92962 1.04130 1.45238 1.71004 1.04459 1.18152 1.15649 0.77247 0.82472 0.82120 1.90865 1.59521 1.66986 1.34486 1.49139 1.68833 1.10302 1.11480 1.23132 0.96950 0.82859 0.95474 1.22367 0.96887 0.95759 0.94596 1.23426 0.96920 0.99263 0.82246 1.21166 0.90918 1.02157 0.97594 1.21801 1.01868 0.98825 0.93878 1.21479 0.80642 1.01541 0.97680 1.57315 1.18537 1.76922 1.30530 1.00565 0.72362 0.74335 0.72837 1.93414 1.33423 1.87369 1.86954 1.93363 1.66563 1.59276 1.82434 1.31181 1.57060 1.20793 1.08106 0.87832 1.25203 0.90738 0.98874 0.96172 1.70027 1.40594 1.32139 1.06031 0.87518 0.82437 0.81393 0.84646 1.16336 1.14612 1.14584 1.21444 0.93092 0.97268 0.87672 0.91853 0.89802 0.94939 0.91434 0.91870 0.89278 0.91134 0.76023 0.88919 0.88857 0.89866 0.88954 0.89394 0.91040 0.88022 0.92153 0.90429 0.89944 0.89978 0.89086 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 2 C 0.15 2.64 3.18 44.99 0.14 2.78 16 3 C -0.15 -1.61 9.38 71.98 0.68 -0.94 16 4 N -0.73 -15.07 5.08 -457.82 -2.33 -17.40 16 5 C 0.72 19.77 8.72 179.05 1.56 21.33 16 6 O -0.64 -22.36 16.73 -3.99 -0.07 -22.43 16 7 N -0.66 -15.79 3.45 -861.40 -2.97 -18.77 16 8 C 0.14 2.96 7.97 86.30 0.69 3.65 16 9 C -0.09 -2.03 0.87 -52.02 -0.05 -2.07 16 10 C 0.10 2.36 7.42 86.32 0.64 3.00 16 11 C -0.08 -1.47 5.03 30.54 0.15 -1.32 16 12 C -0.12 -2.50 5.99 30.55 0.18 -2.31 16 13 C 0.11 3.05 6.38 86.19 0.55 3.60 16 14 N -0.99 -33.57 3.30 -514.32 -1.70 -35.27 16 15 S 2.70 125.38 4.23 -56.49 -0.24 125.14 16 16 O -1.02 -50.05 14.62 -128.00 -1.87 -51.92 16 17 O -1.03 -51.00 15.43 -128.00 -1.97 -52.97 16 18 C -1.04 -56.75 10.29 67.73 0.70 -56.05 16 19 H 0.10 5.82 8.06 -2.91 -0.02 5.79 16 20 C 0.11 6.01 5.47 84.66 0.46 6.47 16 21 N -0.86 -49.23 13.96 21.45 0.30 -48.93 16 22 Si 0.82 40.13 26.54 68.60 1.82 41.95 16 23 H -0.24 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.22 -11.02 5.61 99.48 0.56 -10.47 16 25 H -0.22 -9.69 7.11 99.48 0.71 -8.99 16 26 C 0.13 3.59 5.68 86.20 0.49 4.08 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 1.46 7.58 -2.38 -0.02 1.44 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.40 6.73 8.21 -92.71 -0.76 5.97 16 35 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 36 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 37 H 0.08 2.10 7.98 -2.38 -0.02 2.08 16 38 H 0.09 1.83 7.37 -2.39 -0.02 1.81 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.27 8.02 -2.39 -0.02 1.25 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.28 7.36 -2.39 -0.02 1.27 16 43 H 0.08 2.40 6.93 -2.39 -0.02 2.38 16 44 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.29 15.01 8.31 -92.70 -0.77 14.24 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.09 2.60 6.75 -2.39 -0.02 2.58 16 Total: -1.00 -74.35 383.17 -2.09 -76.44 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.06 Total: 23.98 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 6.88 Total: -19.82 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -6.70 Total: -120.37 kcal Atomic # 8 Polarization: -123.41 SS G_CDS: -3.91 Total: -127.33 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.82 Total: 41.95 kcal Atomic # 16 Polarization: 125.38 SS G_CDS: -0.24 Total: 125.14 kcal Total: -74.35 -2.09 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278256110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.428 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds