Wall clock time and date at job start Wed Apr 1 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.52997 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47141 * 305.00058 * 4 3 2 6 6 C 1.50695 * 109.46981 * 184.99882 * 4 3 2 7 7 O 1.21274 * 120.00413 * 330.27185 * 6 4 3 8 8 N 1.34784 * 119.99635 * 150.00143 * 6 4 3 9 9 C 1.46744 * 125.32744 * 359.69250 * 8 6 4 10 10 C 1.54106 * 106.62907 * 161.58487 * 9 8 6 11 11 H 1.08996 * 113.48912 * 151.36972 * 10 9 8 12 12 C 1.53958 * 109.44480 * 278.63962 * 10 9 8 13 13 N 1.46777 * 106.62630 * 138.18051 * 12 10 9 14 14 C 1.36934 * 125.33811 * 161.51331 * 13 12 10 15 15 H 1.08003 * 120.00162 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00182 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99607 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47176 * 90.00424 * 18 16 14 20 20 H 1.48503 * 109.46973 * 210.00055 * 18 16 14 21 21 H 1.48493 * 109.47320 * 329.99887 * 18 16 14 22 22 C 1.46668 * 109.32261 * 341.48378 * 13 12 10 23 23 C 1.53722 * 107.94154 * 0.54268 * 22 13 12 24 24 H 1.09000 * 113.05853 * 140.00492 * 23 22 13 25 25 C 1.46637 * 125.32562 * 179.97438 * 8 6 4 26 26 S 1.81405 * 109.46895 * 65.00009 * 4 3 2 27 27 N 1.65591 * 104.44949 * 60.00073 * 26 4 3 28 28 O 1.42095 * 110.53999 * 171.62802 * 26 4 3 29 29 O 1.42102 * 110.54051 * 308.37212 * 26 4 3 30 30 H 1.09001 * 109.47203 * 299.99794 * 1 2 3 31 31 H 1.08995 * 109.47452 * 60.00476 * 1 2 3 32 32 H 1.09002 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47203 * 240.00206 * 2 1 3 34 34 H 1.09001 * 109.47409 * 119.99950 * 2 1 3 35 35 H 1.09005 * 109.47351 * 59.99775 * 3 2 1 36 36 H 1.09001 * 109.46956 * 300.00227 * 3 2 1 37 37 H 1.08998 * 110.01078 * 281.00838 * 9 8 6 38 38 H 1.08996 * 110.00831 * 42.38247 * 9 8 6 39 39 H 1.09005 * 110.02476 * 257.46674 * 12 10 9 40 40 H 1.09002 * 110.03398 * 18.88379 * 12 10 9 41 41 H 0.97002 * 119.99446 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.76505 * 240.92314 * 22 13 12 43 43 H 1.09000 * 109.77497 * 120.16905 * 22 13 12 44 44 H 1.08996 * 109.76398 * 300.43762 * 25 8 6 45 45 H 1.09000 * 109.76224 * 61.16014 * 25 8 6 46 46 H 0.97003 * 120.00270 * 0.02562 * 27 26 4 47 47 H 0.97006 * 119.99810 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8409 6 6 4.0722 2.8580 0.1232 7 8 3.4142 3.7758 -0.3189 8 7 5.2502 3.1044 0.7301 9 6 6.1320 2.0880 1.3155 10 6 7.5211 2.7395 1.4597 11 1 8.1101 2.3298 2.2802 12 6 8.2547 2.6870 0.1072 13 7 8.9142 3.9871 -0.0637 14 6 9.9439 4.2453 -0.9286 15 1 10.3333 3.4567 -1.5555 16 6 10.4867 5.5209 -1.0005 17 7 10.0119 6.4820 -0.2369 18 14 11.8909 5.8733 -2.1810 19 1 11.3400 6.3033 -3.4913 20 1 12.7457 6.9529 -1.6251 21 1 12.7033 4.6440 -2.3649 22 6 8.2969 4.9664 0.8369 23 6 7.1946 4.2491 1.6327 24 1 7.1554 4.5545 2.6783 25 6 5.8483 4.4305 0.9139 26 16 4.1740 0.7201 -1.5511 27 7 3.5552 1.7012 -2.7328 28 8 5.5812 0.8825 -1.6619 29 8 3.5613 -0.5405 -1.7857 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 5.7558 1.7860 2.2929 38 1 6.1936 1.2228 0.6554 39 1 8.9981 1.8898 0.1164 40 1 7.5400 2.5221 -0.6992 41 1 10.3915 7.3733 -0.2869 42 1 7.8623 5.7793 0.2552 43 1 9.0473 5.3626 1.5210 44 1 6.0088 4.9002 -0.0565 45 1 5.1883 5.0517 1.5194 46 1 3.0046 2.4626 -2.4920 47 1 3.7440 1.5150 -3.6659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279380341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:22 Heat of formation + Delta-G solvation = -77.076518 kcal Electronic energy + Delta-G solvation = -30477.483849 eV Core-core repulsion = 26402.217116 eV Total energy + Delta-G solvation = -4075.266733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.54472 -38.61761 -37.48853 -36.18631 -35.69266 -35.09830 -33.25070 -32.37220 -31.28835 -30.04743 -29.65063 -26.20895 -25.52160 -24.64785 -22.90349 -21.74050 -20.18502 -20.13222 -19.49769 -19.27440 -18.30703 -17.81733 -17.04316 -16.61044 -16.25296 -16.12065 -15.62277 -15.41316 -14.72453 -14.57414 -14.27483 -14.08420 -13.67563 -13.39441 -13.31312 -13.11068 -12.78419 -12.62348 -12.40089 -12.34721 -12.21579 -12.07428 -11.86784 -11.78012 -11.70013 -11.48916 -11.31925 -11.21487 -10.88855 -10.78539 -10.53902 -10.51480 -10.36894 -10.11440 -10.00513 -9.98535 -9.89075 -9.63697 -8.63043 -8.53511 -6.78359 -5.69326 -3.01453 -0.15058 2.33774 2.53916 2.83142 3.30383 3.42943 3.48077 3.49660 3.70758 4.00650 4.48600 4.51607 4.53748 4.71103 4.73027 4.82194 4.95802 5.15126 5.18068 5.29811 5.38606 5.48981 5.52491 5.52758 5.57132 5.64041 5.75627 5.77257 5.88796 5.91038 5.94258 6.08791 6.12073 6.18008 6.27896 6.37494 6.61676 6.75357 6.93652 7.00697 7.39132 7.56096 7.58542 7.82415 7.88583 8.29431 9.26053 9.86381 10.50296 11.42766 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.003305 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.792390 B = 8469.925500 C = 9056.111840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.169 4.169 3 C -0.085 4.085 4 C -0.615 4.615 5 H 0.160 0.840 6 C 0.544 3.456 7 O -0.526 6.526 8 N -0.591 5.591 9 C 0.095 3.905 10 C -0.107 4.107 11 H 0.101 0.899 12 C 0.138 3.862 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.925 5.925 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.187 3.813 23 C -0.123 4.123 24 H 0.090 0.910 25 C 0.117 3.883 26 S 2.624 3.376 27 N -1.244 6.244 28 O -0.935 6.935 29 O -0.950 6.950 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.252 0.748 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.419 0.581 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 -12.022 3.725 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.124 4.124 4 C -0.724 4.724 5 H 0.177 0.823 6 C 0.328 3.672 7 O -0.404 6.404 8 N -0.323 5.323 9 C -0.028 4.028 10 C -0.127 4.127 11 H 0.119 0.881 12 C 0.012 3.988 13 N -0.329 5.329 14 C -0.351 4.351 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.743 3.257 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.062 3.938 23 C -0.143 4.143 24 H 0.108 0.892 25 C -0.004 4.004 26 S 2.711 3.289 27 N -0.921 5.921 28 O -0.924 6.924 29 O -0.938 6.938 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.247 0.753 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.222 -12.250 3.433 21.412 hybrid contribution 0.322 0.928 -0.283 1.022 sum -16.901 -11.322 3.150 20.585 Atomic orbital electron populations 1.21688 0.94884 1.01998 1.01914 1.22261 0.97452 0.95426 1.05531 1.21286 0.86540 0.98949 1.05615 1.30641 1.09461 1.06863 1.25444 0.82279 1.18645 0.80715 0.88162 0.79645 1.90729 1.56044 1.44837 1.48775 1.48191 1.18945 1.10114 1.55017 1.22236 0.90843 0.91886 0.97840 1.22944 0.93775 0.95324 1.00633 0.88089 1.21367 0.94869 0.89840 0.92726 1.44208 1.38803 1.04283 1.45636 1.19070 1.07337 0.95036 1.13690 0.90369 1.24782 0.99996 0.95924 0.99879 1.69943 1.43928 1.01659 1.41777 0.86103 0.81677 0.77561 0.80347 1.21665 1.21752 1.20716 1.21036 0.90795 0.90504 0.91452 1.23178 0.95150 0.96099 0.99884 0.89176 1.22116 0.93698 0.82848 1.01747 1.04715 0.74645 0.74155 0.75404 1.52955 1.70884 1.46519 1.21739 1.93704 1.29237 1.85550 1.83923 1.93548 1.77326 1.40084 1.82881 0.92812 0.92443 0.92275 0.87477 0.91315 0.89391 0.89773 0.91304 0.90338 0.94643 0.94643 0.93800 0.93253 0.93269 0.90007 0.91682 0.75251 0.74809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.17 -1.38 5.65 -26.73 -0.15 -1.53 16 3 C -0.09 -0.75 4.14 -26.73 -0.11 -0.86 16 4 C -0.61 -6.35 2.14 -27.89 -0.06 -6.41 16 5 H 0.16 1.21 7.23 -51.93 -0.38 0.83 16 6 C 0.54 7.62 6.61 -10.98 -0.07 7.54 16 7 O -0.53 -8.45 15.98 5.56 0.09 -8.36 16 8 N -0.59 -8.84 3.30 -172.28 -0.57 -9.41 16 9 C 0.10 1.26 5.29 -3.33 -0.02 1.24 16 10 C -0.11 -1.73 4.16 -88.26 -0.37 -2.10 16 11 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 12 C 0.14 2.90 6.49 -3.39 -0.02 2.87 16 13 N -0.60 -15.32 3.38 -171.84 -0.58 -15.90 16 14 C -0.22 -6.27 10.25 -15.06 -0.15 -6.42 16 15 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 16 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 17 N -0.92 -26.93 10.25 55.49 0.57 -26.36 16 18 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.19 4.37 4.77 -3.58 -0.02 4.36 16 23 C -0.12 -2.14 4.02 -88.60 -0.36 -2.49 16 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 25 C 0.12 1.98 6.21 -3.61 -0.02 1.96 16 26 S 2.62 30.90 5.46 -107.50 -0.59 30.31 16 27 N -1.24 -12.51 9.13 60.35 0.55 -11.96 16 28 O -0.94 -14.75 16.77 -57.54 -0.96 -15.72 16 29 O -0.95 -11.98 14.89 -57.54 -0.86 -12.84 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.11 1.02 4.90 -51.93 -0.25 0.76 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.70 6.96 -51.93 -0.36 0.34 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.00 6.29 -51.93 -0.33 0.67 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.80 7.72 -51.93 -0.40 0.40 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 43 H 0.05 1.27 7.38 -51.93 -0.38 0.89 16 44 H 0.08 1.63 7.29 -51.93 -0.38 1.25 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.42 3.90 7.19 -34.47 -0.25 3.65 16 47 H 0.42 3.52 8.96 -34.46 -0.31 3.22 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -35.19 373.38 -9.98 -45.17 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.16 Total: 5.03 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.08 Total: -2.90 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.03 Total: -63.64 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.73 Total: -36.92 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 30.90 SS G_CDS: -0.59 Total: 30.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.19 -9.98 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279380341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.904 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds